View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15982_low_14 (Length: 412)
Name: NF15982_low_14
Description: NF15982
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15982_low_14 |
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Alignment Details
Target: chr5 (Bit Score: 354; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 354; E-Value: 0
Query Start/End: Original strand, 18 - 403
Target Start/End: Complemental strand, 3714565 - 3714185
Alignment:
| Q |
18 |
gaaataaataatatattagtccttaatatactaccaagtactaactttttctggtgcattacttatattgatatatatttggtaaaagctaataagtttt |
117 |
Q |
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| T |
3714565 |
gaaataaataatatatcagtccttaatataccaccaagtactaactttttctggtgcattacttatattgatatatatttggtaaaagctaataagtttt |
3714466 |
T |
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| Q |
118 |
cttaaagtgtcagtatataatttaagggatttggtttctttaacacaagtaagtcacttttaagagtaaagtgataagtgccattgatttgatttgattt |
217 |
Q |
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| T |
3714465 |
cttaaagtgtcagtatataatttaagggatttggtttctttaacacaagtaagtcacttttaagagtaaagtgataagtgccatcgatttgattt----- |
3714371 |
T |
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| Q |
218 |
gattattaactgttgaaattgtgataatgtgcatgtacatctgtaacaaaatatgaagtatgaaaatcaacatcttactttctagcgtctaatttctgac |
317 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3714370 |
gattattaactgttgaaattgtgataatgtgcatgtacatctgtaacaaaatatgaagtatgaaaatcaacatcttactttctagcgtctaatttctgac |
3714271 |
T |
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| Q |
318 |
agagacagtgggatatgaagggtgtgtcatgtcatgttacatggaaccttgttgaaatgatatttgtcgcttatgtgaaacctatg |
403 |
Q |
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| T |
3714270 |
agagacagtgggatatgaagggtgtgtcatgtcatgttacatggaaccttgttgaaatgatatttgtcgcttatgtgaaacctatg |
3714185 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 322 - 361
Target Start/End: Original strand, 17032312 - 17032351
Alignment:
| Q |
322 |
acagtgggatatgaagggtgtgtcatgtcatgttacatgg |
361 |
Q |
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| T |
17032312 |
acagtgggttatgaagggtgtgtcttgtcatgttacatgg |
17032351 |
T |
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