View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15982_low_16 (Length: 392)
Name: NF15982_low_16
Description: NF15982
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15982_low_16 |
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Alignment Details
Target: chr8 (Bit Score: 341; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 341; E-Value: 0
Query Start/End: Original strand, 17 - 373
Target Start/End: Complemental strand, 31791124 - 31790768
Alignment:
| Q |
17 |
aatatatttaaaccacattttaattaacaatgtttccattggttaagaggtggacaataacaccctatatattagaaaagttcatgttttgatggaaatg |
116 |
Q |
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| T |
31791124 |
aatatatttaaaccacattttaattaacaatgtttccattggttaagaggtggtcaataacaccctatatattagaaaagttcatgttttgatggaaata |
31791025 |
T |
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| Q |
117 |
tcatgaaattgaatgatgaaggatctttatctgttgggagcaagaaggattggaatattcagtttatcaccaataggatgtgtgccactgcaaagaacca |
216 |
Q |
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| T |
31791024 |
tcatgaaattgaatgatgaaggatctttatctattgggagcaagaaggattggaatattcagtttatcaccaataggatgtgtgccactgcaaagaacca |
31790925 |
T |
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| Q |
217 |
taaaaggaggcctatcaagggaatgtgtagagattttaaatgagggagcattgatctataacgccaagctttccacttcaattttagatttagcaagaaa |
316 |
Q |
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| T |
31790924 |
taaaaggaggcctatcaagggaatgtgtagagattttaaatgagggagcattgatctataacgccaagctttccacttcaattttagatttagcaagaaa |
31790825 |
T |
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| Q |
317 |
acttccagattcaaggcttgtctaccttgaaaactttagtcaattgcatgacattat |
373 |
Q |
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| T |
31790824 |
acttccagattcaaggcttgtctaccttgagaactttagtcaattgcatgacattat |
31790768 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 175; E-Value: 4e-94
Query Start/End: Original strand, 103 - 373
Target Start/End: Complemental strand, 31786619 - 31786349
Alignment:
| Q |
103 |
ttttgatggaaatgtcatgaaattgaatgatgaaggatctttatctgttgggagcaagaaggattggaatattcagtttatcaccaataggatgtgtgcc |
202 |
Q |
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| T |
31786619 |
ttttgatggaaatgtcatgaaacttcacgatgaaggatctttatctattgggagcaagaagaattggaatattcagtttatcaccagtaggatgtgtgcc |
31786520 |
T |
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| Q |
203 |
actgcaaagaaccataaaaggaggcctatcaagggaatgtgtagagattttaaatgagggagcattgatctataacgccaagctttccacttcaatttta |
302 |
Q |
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| | |||||||| ||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||| |||| ||||||||||| |||| ||| || |
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| T |
31786519 |
attccaaagaactgtaaaaggaggcctattaagggaatgtgtagagattgtaaatgagggagcattgatctttaactccaagctttcctcttccattata |
31786420 |
T |
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| Q |
303 |
gatttagcaagaaaacttccagattcaaggcttgtctaccttgaaaactttagtcaattgcatgacattat |
373 |
Q |
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||| |||||| ||||| ||||||||| ||||||||||||||||| |||||||||||| ||||||||||||| |
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| T |
31786419 |
gatctagcaaaaaaacatccagattccaggcttgtctaccttgagaactttagtcaactgcatgacattat |
31786349 |
T |
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