View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15982_low_17 (Length: 389)
Name: NF15982_low_17
Description: NF15982
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15982_low_17 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 367; Significance: 0; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 367; E-Value: 0
Query Start/End: Original strand, 1 - 371
Target Start/End: Complemental strand, 49511647 - 49511277
Alignment:
| Q |
1 |
aagtcaagagttgttttcggtgtcaatggcaatgcaagccagaggtatatcttcacatattattttatttccttgttgactatataatatgtaatgtaat |
100 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
49511647 |
aagtcaagagttgttttctgtgtcaatggcaatgcaagccagaggtatatcttcacatattattttatttccttgttgactatataatatgtaatgtaat |
49511548 |
T |
|
| Q |
101 |
tatgtaacatacttcattatttttctaatcacataaagttccctttatacattctaacacctaacaacatttaaaaacatttcacagattattgggatgg |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
49511547 |
tatgtaacatacttcattatttttctaatcacataaagttccctttatacattctaacacctaacaacatttaaaaacatttcacagattattgggatgg |
49511448 |
T |
|
| Q |
201 |
gtctatatgcaacagttgatttagacaaagcaagagttggaagaactagaatgataggtagccccaaatggaacgaaacctttcacatttactctgcaca |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
49511447 |
gtctatatgcaacagttgatttagacaaagcaagagttggaagaactagaatgataggtagccccaaatggaacgaaacctttcacatttactctgcaca |
49511348 |
T |
|
| Q |
301 |
ttcaatctccaacattatattcactgtcaaacaagataaccccattggagcaactctaattggaagagctt |
371 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
49511347 |
ttcaatctccaacattatattcactgtcaaacaagataaccccattggagcaactctaattggaagagctt |
49511277 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 206 - 258
Target Start/End: Complemental strand, 49522404 - 49522352
Alignment:
| Q |
206 |
tatgcaacagttgatttagacaaagcaagagttggaagaactagaatgatagg |
258 |
Q |
| |
|
|||||||||||||||||||| |||||||| |||||| |||| ||||||||||| |
|
|
| T |
49522404 |
tatgcaacagttgatttagataaagcaagggttggacgaaccagaatgatagg |
49522352 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 311 - 371
Target Start/End: Complemental strand, 49522287 - 49522227
Alignment:
| Q |
311 |
aacattatattcactgtcaaacaagataaccccattggagcaactctaattggaagagctt |
371 |
Q |
| |
|
|||||| |||||||||||||| | ||||| || ||||| ||||||||||| |||||||||| |
|
|
| T |
49522287 |
aacattgtattcactgtcaaagatgataatccgattggtgcaactctaataggaagagctt |
49522227 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University