View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15982_low_18 (Length: 389)
Name: NF15982_low_18
Description: NF15982
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15982_low_18 |
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Alignment Details
Target: chr8 (Bit Score: 367; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 367; E-Value: 0
Query Start/End: Original strand, 1 - 375
Target Start/End: Complemental strand, 2853087 - 2852713
Alignment:
| Q |
1 |
cattggttaaattatgatcctttggtaccgtgtagaaatatgaatcgtgatcctatatgaaaggtgagtttagcactcaaatccttagcacttgtgagtt |
100 |
Q |
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| T |
2853087 |
cattggttaaattatgatcctttggtaccgtgtagaaatatgaatcgtgatcctatatgaaaggtgagtttagcactcaaatccttagcacttgtgagtt |
2852988 |
T |
|
| Q |
101 |
ctgtcattcctgcttagtggaatagagaccattcatgcgaaataaagaattcaaaaattcattgtacatgattacttttggaggagttgtacattgatta |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2852987 |
ctgtcattcctgcttagtggaatagagaccattcatgcgaaataaagaattcaaaaattcattgtacatgattacttttggaggagttgtacattgatta |
2852888 |
T |
|
| Q |
201 |
cttaaaaaacaaaactaacacagaaatttatttctctaaccatttgccaacaagtattgctaacagttcagtgtaacaatagttgagacattctcaatgt |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2852887 |
cttaaaaaacaaaactaacacagaaatttatttctctaaccatttgccaacaagtattgctaacagttcagtgtaacaatagttgagacattctcaatgt |
2852788 |
T |
|
| Q |
301 |
gcagtgactatgtaattcaagttctagctgagcaaaacctgtaaatttagtacgaacaaaattacagtgtgtgat |
375 |
Q |
| |
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| T |
2852787 |
gcagtgactatgtaattcaagttctagctgagcaaaacctgtaaatttagtacaaacaaaataacagtgtgtgat |
2852713 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 367; E-Value: 0
Query Start/End: Original strand, 1 - 375
Target Start/End: Complemental strand, 2905119 - 2904745
Alignment:
| Q |
1 |
cattggttaaattatgatcctttggtaccgtgtagaaatatgaatcgtgatcctatatgaaaggtgagtttagcactcaaatccttagcacttgtgagtt |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2905119 |
cattggttaaattatgatcctttggtaccgtgtagaaatatgaatcgtgatcctatatgaaaggtgagtttagcactcaaatccttagcacttgtgagtt |
2905020 |
T |
|
| Q |
101 |
ctgtcattcctgcttagtggaatagagaccattcatgcgaaataaagaattcaaaaattcattgtacatgattacttttggaggagttgtacattgatta |
200 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2905019 |
ctgtcattcctgcttagtggaatagagaccattcatgcgaaataaagaattcaaaaattcattgtacatgattacttttggaggagttgtacattgatta |
2904920 |
T |
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| Q |
201 |
cttaaaaaacaaaactaacacagaaatttatttctctaaccatttgccaacaagtattgctaacagttcagtgtaacaatagttgagacattctcaatgt |
300 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2904919 |
cttaaaaaacaaaactaacacagaaatttatttctctaaccatttgccaacaagtattgctaacagttcagtgtaacaatagttgagacattctcaatgt |
2904820 |
T |
|
| Q |
301 |
gcagtgactatgtaattcaagttctagctgagcaaaacctgtaaatttagtacgaacaaaattacagtgtgtgat |
375 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||| |
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| T |
2904819 |
gcagtgactatgtaattcaagttctagctgagcaaaacctgtaaatttagtacaaacaaaataacagtgtgtgat |
2904745 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 163; Significance: 6e-87; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 163; E-Value: 6e-87
Query Start/End: Original strand, 5 - 350
Target Start/End: Complemental strand, 42951448 - 42951120
Alignment:
| Q |
5 |
ggttaaattatgatcctttggtaccgtgtagaaatatgaatcgtgatcctatatgaaaggtgag-tttagcactcaaatccttagc-acttgtgagttct |
102 |
Q |
| |
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||||||||| |||||||||| ||| || ||||||||||| ||||||| ||||||| |||||| ||||||||||||||||||| | ||||||||||| | |
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| T |
42951448 |
ggttaaattgtgatcctttg-taca-tggagaaatatgaactgtgatccaatatgaagggtgagatttagcactcaaatccttaaccacttgtgagtttt |
42951351 |
T |
|
| Q |
103 |
gtcattcctgcttagtggaatagagaccattcatgcgaaataaagaattcaaaaattcattgtacatgattacttttggaggagttgtacattgattact |
202 |
Q |
| |
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||||||||| |||||||||||| ||| ||||| |||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
42951350 |
gtcattcctccttagtggaatatagatcattctagcgaaataaa------aaaaattcattgtacatgattactttttgaggagttgtacattgattact |
42951257 |
T |
|
| Q |
203 |
taaaaaacaaaactaacacagaaatttatttctctaaccatttgccaacaagtattgctaacagttcagtgtaacaatagttgagacattctcaatgtgc |
302 |
Q |
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||||||||||||||||| ||||||||||||| ||||||| |||||||| ||||||||| |||||||||||||||||||||||||||||| |
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| T |
42951256 |
taaaaaacaaaactaactcagaaatttatttatctaacc-----------agtattgccaacagttcaacgtaacaatagttgagacattctcaatgtgc |
42951168 |
T |
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| Q |
303 |
agtgactatgtaattcaagttctagctgagcaaaacctgtaaatttag |
350 |
Q |
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|||||| |||||||||| |||||||||||||||||| ||||||||||| |
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|
| T |
42951167 |
agtgacaatgtaattcacgttctagctgagcaaaacttgtaaatttag |
42951120 |
T |
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