View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15982_low_19 (Length: 382)
Name: NF15982_low_19
Description: NF15982
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15982_low_19 |
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Alignment Details
Target: chr1 (Bit Score: 334; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 334; E-Value: 0
Query Start/End: Original strand, 14 - 359
Target Start/End: Complemental strand, 43100109 - 43099764
Alignment:
| Q |
14 |
atatgagatcaccctataatttgaattaatgattaaaatttttagatataagatttttggtgttgatatatttcatttggaaattgtagctttcaaacaa |
113 |
Q |
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| T |
43100109 |
atatgagatcaccctataatttgaattaatgattaaaatttttagatataagatttttggtgtttatatatttcatttggaaattgtagctttcaaacaa |
43100010 |
T |
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| Q |
114 |
ccaagactattcaggaaaccaagatgaaatagacactgaattctttggtaccacgcaaaataagcctaatgcttcgatgtcaaatgtgtgctctagactc |
213 |
Q |
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| T |
43100009 |
ccaagactattcaggaaaccaagatgaaatagacactgaattctttggtaccacgcaaaataagcctaatgcttcgatgtcaaatgtgtgcactagactc |
43099910 |
T |
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| Q |
214 |
ttaaattaatcaactacctcatttcatcagtcactaaaatccattttgctatgacaaacaaatattgttcaattacaatacttcatccctacatactaca |
313 |
Q |
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| T |
43099909 |
ttaaattaatcaattacctcatttcatcagtcactaaaatccattttgctatgacaaacaaatattgttcaattacaatacttcatccctacatactaca |
43099810 |
T |
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| Q |
314 |
tggacaagtcaatgaattagatttaaaatcctatgcacatgcaaaa |
359 |
Q |
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| T |
43099809 |
tggacaagtcaatgaattagatttaaaatcctatgcacatgcaaaa |
43099764 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 67 - 179
Target Start/End: Original strand, 40870951 - 40871065
Alignment:
| Q |
67 |
tttttggtgttgatat--atttcatttggaaattgtagctttcaaacaaccaagactattcaggaaaccaagatgaaatagacactgaattctttggtac |
164 |
Q |
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| T |
40870951 |
tttttggtgttgatattaatttcatttgggaattgtagctttcaaacatagaagatcacaaaggaacccatgatgaaatagacattgagttccttggtac |
40871050 |
T |
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| Q |
165 |
cacgcaaaataagcc |
179 |
Q |
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| T |
40871051 |
tacacaagataagcc |
40871065 |
T |
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