View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15982_low_23 (Length: 357)
Name: NF15982_low_23
Description: NF15982
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15982_low_23 |
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Alignment Details
Target: chr1 (Bit Score: 143; Significance: 5e-75; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 143; E-Value: 5e-75
Query Start/End: Original strand, 20 - 234
Target Start/End: Complemental strand, 1506761 - 1506535
Alignment:
| Q |
20 |
cattgtagatttgcttagtgaatttaaatctctacaa-gtgtacc-tatgtttaccaagtgaaatag----------tacatgccaaatcatcaccttan |
107 |
Q |
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| T |
1506761 |
cattgtagatttgcttagtgaatttaaatctctacaaagtgtaccctatgtttaccaagtgaaatagggtgaaatagtacatgccaaatcatcaccttat |
1506662 |
T |
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| Q |
108 |
nnnnnnaatatattgagtggcatttcaggccggagtgggtttttgtggattgtcacaaaattatgaatctctcaaacaccaataccactaaaccaagatg |
207 |
Q |
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| T |
1506661 |
ttttttaatatattgagtggcatttcagcccgtagtgggtttttgtggattgtcacaaaattatgaatctctcaaacaccaataccactaaaccaagatg |
1506562 |
T |
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| Q |
208 |
cctaagatacagattcttgtaacatat |
234 |
Q |
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||||||||| ||||||||||||||||| |
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| T |
1506561 |
cctaagatatagattcttgtaacatat |
1506535 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 106; E-Value: 5e-53
Query Start/End: Original strand, 218 - 323
Target Start/End: Complemental strand, 1506511 - 1506406
Alignment:
| Q |
218 |
agattcttgtaacatataaaaggaaacattttcatatgcaaaaatggtccacattttaatggtgcaggacctgttatatgtaactctaaatagtactaac |
317 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1506511 |
agattcttgtaacatataaaaggaaacattttcatatgcaaaaatggtccacattttaatggtgcaggacctgttatatgtaactctaaatagtactaac |
1506412 |
T |
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| Q |
318 |
tgtgat |
323 |
Q |
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|||||| |
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| T |
1506411 |
tgtgat |
1506406 |
T |
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