View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15982_low_24 (Length: 351)
Name: NF15982_low_24
Description: NF15982
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15982_low_24 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 321; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 321; E-Value: 0
Query Start/End: Original strand, 12 - 336
Target Start/End: Complemental strand, 24879448 - 24879124
Alignment:
| Q |
12 |
gaatattactacaatgatcaattctatctttttgaagggtttgcatagaattgaactcactaaaatttgttactgttgtggaaggtaattgttctggatt |
111 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
24879448 |
gaatattactacaatgatcaattctatctttttgaagggtttgcatagaattgaactcactaaaatttgttactgttgtggatggtaattgttctggatt |
24879349 |
T |
|
| Q |
112 |
aagattcaaacaccctttgaaaccaagttctaattcagacaaatttaaactactcgtaccgccttcaacatttgatagccttgaattttctagacaagga |
211 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24879348 |
aagattcaaacaccctttgaaaccaagttctaattcagacaaatttaaactactcgtaccgccttcaacatttgatagccttgaattttctagacaagga |
24879249 |
T |
|
| Q |
212 |
tcgaaatttgtttttcgcatttgatcaggaatatgagaatcaggtttttgattgaggaaatttgcataaaccaatgcaagatcaatattgggtctatcat |
311 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24879248 |
tcgaaatttgtttttcgcatttgatcaggaatatgagaatcaggtttttgattgaggaaatttgcataaaccaatgcaagatcaatattgggtctatcat |
24879149 |
T |
|
| Q |
312 |
tcaccaatgaggaactagaagatga |
336 |
Q |
| |
|
||||||||||||||||||||||||| |
|
|
| T |
24879148 |
tcaccaatgaggaactagaagatga |
24879124 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University