View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15982_low_25 (Length: 351)
Name: NF15982_low_25
Description: NF15982
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15982_low_25 |
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Alignment Details
Target: chr2 (Bit Score: 291; Significance: 1e-163; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 291; E-Value: 1e-163
Query Start/End: Original strand, 1 - 332
Target Start/End: Original strand, 17449349 - 17449685
Alignment:
| Q |
1 |
aatggagaaaagcattgttgaagagaggaagatgagtggttggaaagcaagaggtttgaaagaagggaatgaaattatattgagtgagaggtttggttga |
100 |
Q |
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| T |
17449349 |
aatggagaaaagcattgttgaagagaggaagatgagtggttggaaagcaagaggtttgaaagaagggaatgaaattatattgagtgagaggttcggttga |
17449448 |
T |
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| Q |
101 |
tgagagttggagaagaagggaaattctaacttttcttttctttgttatcgata-ttcttccattgatttgtgagtgaaattcacactatgaatgaatcat |
199 |
Q |
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| T |
17449449 |
tgagagttggagaagaagggaaattctaacttttcttttctttgttatcgatatttcttccattgatttgtgagtgaaattcacactatgaatgaatcaa |
17449548 |
T |
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| Q |
200 |
tgaattccacaaatggaaacaatac-tttacaaaagctttaaacaaatttagtctgaaacagtaaaatagaatccaacaaagaa---gatcatgatgaat |
295 |
Q |
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| T |
17449549 |
tgaattccacaaatggaaacaatacttttacaaaagctttaaacaaatttagtctgaaacggtaaaatagaatccaacaaagaagatgatcatgatgaat |
17449648 |
T |
|
| Q |
296 |
aaataaaaaccaacccacatgtcccgcactacaattc |
332 |
Q |
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| T |
17449649 |
aaataaaaaccaacccacatgtgccgcactacaattc |
17449685 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 125 - 282
Target Start/End: Original strand, 17449910 - 17450066
Alignment:
| Q |
125 |
tctaacttttcttttcttt---gttatcgatatt-cttccattgatttgtgagtgaaattcacactatgaatgaatcattgaattccacaaatggaaaca |
220 |
Q |
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| T |
17449910 |
tctaagttttcttttcttttctgttatagatatttcttccattgatttgtgagtgaaattcacactatgaatgaa----tgaattccagaagtggaaaca |
17450005 |
T |
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| Q |
221 |
atactttacaaaagctttaaacaaatttagtctgaaacagtaaaatagaatccaacaaagaa |
282 |
Q |
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| T |
17450006 |
atactttacaaaatgtttacacaaatttag-ctgtaacagaaaaacagcatgcaacaaagaa |
17450066 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 245 - 317
Target Start/End: Complemental strand, 46128390 - 46128317
Alignment:
| Q |
245 |
atttagtctgaaacagtaaaatagaatccaacaaagaag-atcatgatgaataaataaaaaccaacccacatgt |
317 |
Q |
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||||||||| |||||| ||||| |||||||||||||||| | ||||||||| ||| |||||||||||||||| |
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| T |
46128390 |
atttagtctaaaacagaaaaatggaatccaacaaagaagaaaaatgatgaattgatacaaaccaacccacatgt |
46128317 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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