View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15982_low_26 (Length: 345)
Name: NF15982_low_26
Description: NF15982
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15982_low_26 |
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Alignment Details
Target: chr5 (Bit Score: 102; Significance: 1e-50; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 190 - 327
Target Start/End: Original strand, 6510927 - 6511065
Alignment:
| Q |
190 |
ctcgtggagaaatataatccatagataatcatgtgtcttgagtaatttcttgatgtaaaataatatatatttttaaatttcta-nnnnnnncttagcgat |
288 |
Q |
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| T |
6510927 |
ctcgtggagaaatataatccatagataatcatgtgtcttgagtaattttttgatgtaaaataatatatatttttaaatttctattattttttttagcgat |
6511026 |
T |
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| Q |
289 |
aactataaaattattttatcttgaatgcatcactatctt |
327 |
Q |
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| T |
6511027 |
aactataaaattattttatcttgaatgcatcactatctt |
6511065 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 19 - 125
Target Start/End: Original strand, 6510769 - 6510871
Alignment:
| Q |
19 |
atcaagttaagaccccacaaacaattaatattgagtaagtttacttgtgaagaaacaaataaaattattgaatggttgtttcgtcatatgcttagacata |
118 |
Q |
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| T |
6510769 |
atcaagttaggaccccacaaacaat----attgagtaagtttacttgtgaagaaacaaataaaattattgaatggttgtttggtcatatgcttagacata |
6510864 |
T |
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| Q |
119 |
tattgag |
125 |
Q |
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||||||| |
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| T |
6510865 |
tattgag |
6510871 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 190 - 319
Target Start/End: Original strand, 35501751 - 35501877
Alignment:
| Q |
190 |
ctcgtggagaaatataatccatagataatcatgtgtcttgagtaatttcttgatgtaaaataatatatatttttaaatttctannnnnnncttagcgata |
289 |
Q |
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| T |
35501751 |
ctcgtggagaaatataatctacagaatatcatgtgtcttg---aatttcttgatgtaagatagtatagtttttgaaatctccaatttcttcttagcgata |
35501847 |
T |
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| Q |
290 |
actataaaattattttatcttgaatgcatc |
319 |
Q |
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|||| ||||| |||||||| |||||||||| |
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| T |
35501848 |
actacaaaataattttatcatgaatgcatc |
35501877 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 282 - 318
Target Start/End: Complemental strand, 47103260 - 47103224
Alignment:
| Q |
282 |
tagcgataactataaaattattttatcttgaatgcat |
318 |
Q |
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| T |
47103260 |
tagcgataattataaaattatttgatcttgaatgcat |
47103224 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 281 - 320
Target Start/End: Complemental strand, 36029070 - 36029031
Alignment:
| Q |
281 |
ttagcgataactataaaattattttatcttgaatgcatca |
320 |
Q |
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| T |
36029070 |
ttagcgataactataaaattattttatcatgagtgcatca |
36029031 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 199 - 263
Target Start/End: Original strand, 33951903 - 33951964
Alignment:
| Q |
199 |
aaatataatccatagataatcatgtgtcttgagtaatttcttgatgtaaaataatatatattttt |
263 |
Q |
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||||||||| ||||||| || ||||||||| ||| |||||||||||||||| ||||||||||| |
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| T |
33951903 |
aaatataatacatagatgattatgtgtctttagt---ttcttgatgtaaaatagtatatattttt |
33951964 |
T |
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