View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15982_low_27 (Length: 341)
Name: NF15982_low_27
Description: NF15982
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15982_low_27 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 315; Significance: 1e-177; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 315; E-Value: 1e-177
Query Start/End: Original strand, 19 - 341
Target Start/End: Original strand, 7498578 - 7498900
Alignment:
| Q |
19 |
attctcgagtaaaattaaatttattttgttctaaactttcaatttcttttgaaggtgcctgaggatttgattgaggcaatcacaaacaagactgagacac |
118 |
Q |
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| T |
7498578 |
attctcgagtaaaattaaatttattttgttctaaactttcaatttcttttgaaggtgccggaggatttgattgaggcaatcacaaacaagactgagacac |
7498677 |
T |
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| Q |
119 |
cacctatagtgcatgcagtttcagaaaagaaacatagcactgtcttggaattggaggcttcatttcttaaatactttacaggcattgaatacaactccaa |
218 |
Q |
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| T |
7498678 |
cacctatagtgcatgcagtttcagaaaagaaacatagcactgtcttggaattggaggcttcatttcttaaatactttacaggcattgaatacaactccaa |
7498777 |
T |
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| Q |
219 |
gaatctgaaaacatacaacatctttgatagtgaccatgacttcgaaaattgttatggttggacctcgacagtcaccaaaaagcaactaaaacgattgaag |
318 |
Q |
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| T |
7498778 |
gaatctgaaaacatacaacatctttgatagtgaccatgacttcgaaaattgttatggttggacctcaacagtcaccaaaaagcaactaaaacgattgaag |
7498877 |
T |
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| Q |
319 |
agtaacaacattggatttctcat |
341 |
Q |
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| T |
7498878 |
agtaacaacattggatttctcat |
7498900 |
T |
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