View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15982_low_28 (Length: 337)
Name: NF15982_low_28
Description: NF15982
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15982_low_28 |
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Alignment Details
Target: chr3 (Bit Score: 307; Significance: 1e-173; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 307; E-Value: 1e-173
Query Start/End: Original strand, 9 - 323
Target Start/End: Original strand, 29280509 - 29280823
Alignment:
| Q |
9 |
acatcatcaaccttttcattctcaccatctacaccttttcttttttcttcttccgatccacgatcaccaaaaccagcaccattaccgtcctctttaacag |
108 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
29280509 |
acatcatcaaccttttcattctcaccatctacaccttttcttttttcttcttccgatccacaatcaccaaaaccagcaccattaccgtcctctttaacag |
29280608 |
T |
|
| Q |
109 |
acaaaaccaacgacttcatcggaatgataaataacctaaccaaagtctcatgaggcaaagacatcagcatctgttcccattccttcaactcagtcatcgc |
208 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
29280609 |
acaaaaccaacgacttcatcggaatgataaataacctaaccaaagtctcatgaggcaaagacatcagcatctgttcacattccttcaactcagtcatcgc |
29280708 |
T |
|
| Q |
209 |
aagcaccaattcaaaagccaaacgatgagtttcatcgctaacaccgctattctccgcgatctgaagtgcatctaagaccatatcactcatgtaaggcttc |
308 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29280709 |
aagcaccaattcaaaagccaaacgatgagtttcatcgctaacaccgctattctccgcgatctgaagtgcatctaagaccatatcactcatgtaaggcttc |
29280808 |
T |
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| Q |
309 |
acaagaagaggttca |
323 |
Q |
| |
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||||||||||||||| |
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| T |
29280809 |
acaagaagaggttca |
29280823 |
T |
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