View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15982_low_29 (Length: 336)
Name: NF15982_low_29
Description: NF15982
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15982_low_29 |
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Alignment Details
Target: chr4 (Bit Score: 173; Significance: 5e-93; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 173; E-Value: 5e-93
Query Start/End: Original strand, 30 - 217
Target Start/End: Original strand, 49158280 - 49158468
Alignment:
| Q |
30 |
ttatttcacagcgtaaaaacaaaccctaaattttccacctcccctcctccacaattcactccttcactttcaggcagtacataaaccaccaaattcaatt |
129 |
Q |
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| T |
49158280 |
ttatttcgcagcgtaaaaacaaaccctaaattttccacctcccctcctccacaattcactcctttactttcaggcagtacataaaccaccaaattcaatt |
49158379 |
T |
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| Q |
130 |
gttcgaaacagcccaatgcatgtaag-aaaaaatggttcaatcgaacaacaaaatccgccaccaaaaaacccctattccaacaactaca |
217 |
Q |
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| T |
49158380 |
gttcgaaacagcccaatgcatgtaagaaaaaaatggttcaatcgaacaacaaaatccgccaccaaaaaacccctattccaacaactaca |
49158468 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 275 - 317
Target Start/End: Original strand, 49158526 - 49158568
Alignment:
| Q |
275 |
cattttacaatctaattcacatcatcatcaaaagggtcaacac |
317 |
Q |
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| T |
49158526 |
cattttacaatctaattcacatcatcatcaaaagggtcaacac |
49158568 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 82; Significance: 1e-38; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 49 - 217
Target Start/End: Complemental strand, 2866524 - 2866350
Alignment:
| Q |
49 |
caaaccctaaattttccacctcccctcctccacaattcactccttcactttcaggcagtacataaaccaccaaattcaattgttcgaaacagc------- |
141 |
Q |
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|||||||||||||||||| |||||||||||| ||||||| ||||| ||||||| |||| |||||||||||||||||||||| ||||||||||| |
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| T |
2866524 |
caaaccctaaattttccagctcccctcctccgcaattcattcctttactttcaagcagcacataaaccaccaaattcaattattcgaaacagcccaacac |
2866425 |
T |
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| Q |
142 |
ccaatgcatgtaagaaaaaatggttcaatcgaacaacaaaatccgccaccaaaaaacccctattccaacaactaca |
217 |
Q |
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| T |
2866424 |
ccaacgcatgttagaaaaaatgctttaatcgaacaacaaaaaccgccactaaaaaa-ccctaatccaactactaca |
2866350 |
T |
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