View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15982_low_31 (Length: 329)
Name: NF15982_low_31
Description: NF15982
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15982_low_31 |
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Alignment Details
Target: chr7 (Bit Score: 274; Significance: 1e-153; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 274; E-Value: 1e-153
Query Start/End: Original strand, 18 - 315
Target Start/End: Complemental strand, 4498917 - 4498620
Alignment:
| Q |
18 |
acttcaatacaacttcaatatcgaccagactcctagcagcgggatggtccaattcccacattttcgtccctcttgacagataaagacaaaggtatcataa |
117 |
Q |
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| T |
4498917 |
acttcaatacaacttcaatatcgaccagactcctagcggcggtatggtccaattcccacattttcatccctcttgacagataaagacaaaggtatcataa |
4498818 |
T |
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| Q |
118 |
acaagatctttcaagcggtcaagaaaatgaaaataagcatgcctgcaagttctgataaagaaaatagcaatgcaaaccccccaaaaccctgctgcaaatc |
217 |
Q |
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| T |
4498817 |
acaagatctttcaagcggtcaagaaaatgaaaataagcatgcctgcaagttctgatcaagaaagtagcaatgcaaaccccccaaaaccctgctgcaaatc |
4498718 |
T |
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| Q |
218 |
caactcccattcctatgtagaaatctaatgtgttgaagaaacctgcatcggaatttccaccctccaaaacttgtttaagtttggtacaattgttcatc |
315 |
Q |
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|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4498717 |
caactcccattcctatgtagaaatctgatgtgttgaagaaacctgcatcggaatttccaccctccaaaacttgtttaagtttggtacaattgttcatc |
4498620 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 160; E-Value: 3e-85
Query Start/End: Original strand, 100 - 315
Target Start/End: Original strand, 4329074 - 4329289
Alignment:
| Q |
100 |
aagacaaaggtatcataaacaagatctttcaagcggtcaagaaaatgaaaataagcatgcctgcaagttctgataaagaaaatagcaatgcaaacccccc |
199 |
Q |
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| T |
4329074 |
aagacaaaggtctcataaacaagatctttcaagcggtcaagaaaatgaaaataagcatgcctgcaagttctgttaaagaaaatagcaatgcaaacccccc |
4329173 |
T |
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| Q |
200 |
aaaaccctgctgcaaatccaactcccattcctatgtagaaatctaatgtgttgaagaaacctgcatcggaatttccaccctccaaaacttgtttaagttt |
299 |
Q |
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||||||||||||||||||||||||||||||||| |||||||||| |||||| | |||||| ||||| |||||||||| ||||||||||||||| | ||| |
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| T |
4329174 |
aaaaccctgctgcaaatccaactcccattcctacgtagaaatctgatgtgtcaacgaaaccagcatcagaatttccacgctccaaaacttgtttcatttt |
4329273 |
T |
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| Q |
300 |
ggtacaattgttcatc |
315 |
Q |
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|||||||| |||||| |
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| T |
4329274 |
tgtacaattattcatc |
4329289 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 18 - 96
Target Start/End: Original strand, 4328954 - 4329036
Alignment:
| Q |
18 |
acttcaatacaacttcaatatcgaccagactcctag----cagcgggatggtccaattcccacattttcgtccctcttgacag |
96 |
Q |
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|||||||| ||||||||||||||||||||||||||| |||| ||||||||||| |||||||||| ||||||||||||| |
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| T |
4328954 |
acttcaatgcaacttcaatatcgaccagactcctagtggcgtgcggtatggtccaatttccacattttcatccctcttgacag |
4329036 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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