View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15982_low_34 (Length: 316)
Name: NF15982_low_34
Description: NF15982
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15982_low_34 |
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Alignment Details
Target: chr4 (Bit Score: 220; Significance: 1e-121; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 11 - 293
Target Start/End: Original strand, 42453922 - 42454203
Alignment:
| Q |
11 |
gattatactagcaaggataagattaatcataagtattcatcatatccaatgtactatgattatactccttatatcataatcattgtcgattgaatatgta |
110 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
42453922 |
gattatactagcaaggataagattaatcataagtattcatcatatccaatgtactatgattatactccttatatcataatcattgtggattgaatatgta |
42454021 |
T |
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| Q |
111 |
ataccttcttaagtcaccatagtttaaaaagcatcatcatcttaaatag-nnnnnnnnntcttcatattttgatatgtttttatagtgtggttgtaagt- |
208 |
Q |
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| T |
42454022 |
atac---cttaagtcaccatagtttaaaaagcatcatcatcttaaatagaaaaaaaaaatcttcatattttgatatgtttttatagtgtggttgtaagta |
42454118 |
T |
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| Q |
209 |
aaaaaatgttgtagcagaattcatagataactttcatcatgttgctaactagaggaagcttatttaattgttttcagaatgattc |
293 |
Q |
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|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42454119 |
aaaaaatgttgtagtagaattcatagataactttcatcatgttgctaactagaggaagcttatttaattgttttcagaatgattc |
42454203 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 171; Significance: 8e-92; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 171; E-Value: 8e-92
Query Start/End: Original strand, 18 - 293
Target Start/End: Original strand, 33053006 - 33053278
Alignment:
| Q |
18 |
ctagcaaggataagattaatcataagtattcatcatatccaatgtactatgattatactccttatatcataatcattgtcgattgaatatgtaatacctt |
117 |
Q |
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||||||||||||||||||||| || ||||||||||||| ||||||||||||||||||||||||||||||||| |||| |||||||||||| |||||||| |
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| T |
33053006 |
ctagcaaggataagattaatcgaaattattcatcatatctaatgtactatgattatactccttatatcataatgattgccgattgaatatgcaatacctt |
33053105 |
T |
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| Q |
118 |
cttaagtcaccatagtttaaaaagcatcatcatcttaaatagnnnnnnnnntcttcatattttgatatgtttttatagtgtggttgtaagtaaaaaatgt |
217 |
Q |
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| T |
33053106 |
---aagtcaccacagtttaaaaaatatcatcatcttaaatagaaaaaaatttcttcctattttgatatgtttttaaagtgtggttgtaagtaaaaaatgt |
33053202 |
T |
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| Q |
218 |
tgtagcagaattcatagataactttcatcatgttgctaactagaggaagcttatttaattgttttcagaatgattc |
293 |
Q |
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||||| |||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
33053203 |
tgtagtggaattcatagataacttttatcatgttgctaactagaggaagctcatttaattgttttcagaatgattc |
33053278 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 166; Significance: 8e-89; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 166; E-Value: 8e-89
Query Start/End: Original strand, 11 - 293
Target Start/End: Complemental strand, 24115317 - 24115036
Alignment:
| Q |
11 |
gattatactagcaaggataagattaatcataagtattcatcatat--ccaatgtactatgattatactccttatatcataatcattgtcgattgaatatg |
108 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||| |||||| |
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| T |
24115317 |
gattatactagcaaggataagattaatcataagtattcatcatatatccaatgtactatgattatactccttatatcataatcattgtagattaaatatg |
24115218 |
T |
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| Q |
109 |
taataccttcttaagtcaccatagtttaaaaagcatcatcatcttaaatag-nnnnnnnnntcttcatattttgatatgtttttatagtgtggttgtaag |
207 |
Q |
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||||| ||| ||||||||||||||||||| ||||||||| |||||||| |||||||||||||||||||||||| |||||||| ||||| |
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| T |
24115217 |
caatac---ctttagtcaccatagtttaaaaaacatcatcattttaaatagaacatttttttcttcatattttgatatgtttttaaagtgtggtcgtaag |
24115121 |
T |
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| Q |
208 |
taaaaaatgttgtagcagaattcatagataactttcatcatgttgctaactagaggaagcttatttaattgttttcagaatgattc |
293 |
Q |
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| T |
24115120 |
t-aaaaatgttgtagtagaattcatagataactttcataatgtcgctaactagaggaagctcatttaattattttcagaatgattc |
24115036 |
T |
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