View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15982_low_35 (Length: 309)

Name: NF15982_low_35
Description: NF15982
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15982_low_35
NF15982_low_35
[»] chr6 (1 HSPs)
chr6 (1-290)||(30769193-30769482)


Alignment Details
Target: chr6 (Bit Score: 286; Significance: 1e-160; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 286; E-Value: 1e-160
Query Start/End: Original strand, 1 - 290
Target Start/End: Complemental strand, 30769482 - 30769193
Alignment:
Q  1 ctctgatcactctacttagtttggtgcagagtgaaaacaggggagaaacagagttagtacaagggaaatagcagagtgaaaacaggggaggaacagagta 100  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30769482 ctctgatcactctgcttagtttggtgcagagtgaaaacaggggagaaacagagttagtacaagggaaatagcagagtgaaaacaggggaggaacagagta 30769383  T
Q  101 aatagaagttgatattcctataagttgagattcaactgtgacttattcttttttcctctttctatgtgactttacctttgaaatgaaatgaaaatgagat 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30769382 aatagaagttgatattcctataagttgagattcaactgtgacttattcttttttcctctttctatgtgactttacctttgaaatgaaatgaaaatgagat 30769283  T
Q  201 accttatatgcaaataaagaatctctcacagtttgttacaacttgttttttgctgtatttagtacaatccagcttttctcttagtattcc 290  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30769282 accttatatgcaaataaagaatctctcacagtttgttacaacttgttttttgctgtatttagtacaatccagcttttctcttagtattcc 30769193  T

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