View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15982_low_38 (Length: 288)
Name: NF15982_low_38
Description: NF15982
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15982_low_38 |
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Alignment Details
Target: chr1 (Bit Score: 233; Significance: 1e-129; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 233; E-Value: 1e-129
Query Start/End: Original strand, 20 - 272
Target Start/End: Original strand, 4081395 - 4081647
Alignment:
| Q |
20 |
aattagacatgacaaaataaaatgcttgaattgtcacattattcagctcatatcctaaatatcaatgtccaactaatgttgatcccgaacattcttaatc |
119 |
Q |
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| T |
4081395 |
aattagacatgacaaaataaaattcttgaattgtcacattaatcagctcatatcctaaatatcaatgtccaactaatgttgatcccgaacattcttaatc |
4081494 |
T |
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| Q |
120 |
caagttttgcaagttgcatgtgatctagtatagactaaacaagttcatgacttctcactttccacatcattttcattctcttcattaattttattttttc |
219 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
4081495 |
caagttttgcaagttgcatgtgatctagtatagactaaacaagttcatgacttctcactttcgacatcattttcattctcttcattaattttatttttgg |
4081594 |
T |
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| Q |
220 |
gcttaacatagattccatcaacatagcttcacatcaattttgaattttgttta |
272 |
Q |
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| T |
4081595 |
gcttaacatagattccatcaacatagcttcacatcaattttgaattttgttta |
4081647 |
T |
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