View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15982_low_4 (Length: 588)

Name: NF15982_low_4
Description: NF15982
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15982_low_4
NF15982_low_4
[»] chr6 (2 HSPs)
chr6 (17-468)||(31943775-31944246)
chr6 (497-574)||(31944275-31944352)
[»] chr5 (3 HSPs)
chr5 (312-468)||(9394578-9394734)
chr5 (497-574)||(9394767-9394844)
chr5 (145-233)||(9394445-9394534)
[»] chr7 (4 HSPs)
chr7 (254-436)||(1342060-1342243)
chr7 (497-574)||(1342324-1342401)
chr7 (17-115)||(1341881-1341981)
chr7 (154-224)||(1341983-1342052)
[»] chr2 (1 HSPs)
chr2 (312-406)||(35535403-35535497)
[»] chr4 (1 HSPs)
chr4 (316-427)||(5644299-5644410)


Alignment Details
Target: chr6 (Bit Score: 271; Significance: 1e-151; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 271; E-Value: 1e-151
Query Start/End: Original strand, 17 - 468
Target Start/End: Original strand, 31943775 - 31944246
Alignment:
Q  17 atgaaccataaaacaaacaattttcagcatgaaatcatgtcaattaaaatataatttccaacatgaagaaataaaccctgaaaacaaaattttcaacatg 116  Q
    ||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     
T  31943775 atgaaccataaaacacacaattttcagcaagaaatcatgtcaattaaaatataatttccaacatgaagaaataaaccctgaaaacaaaattttcaacata 31943874  T
Q  117 tgaagaaataaaccctnnnnnnnnnnn--ctttcaacataaa-tcaaacaaaataacataaacaccgaattttcaacatgcaatcatagaaataaatcct 213  Q
    ||||||||||||||||             ||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  31943875 tgaagaaataaaccctaaaaaaaaaaaaactttcaacataaaatcaaacaaaataacataaacaccgaattttcaacatgtaatcatagaaataaatcct 31943974  T
Q  214 aaaacagcaaacattcaacannnnnnnn---aaggaccaaactcatgaaatcaagtaaaatataagaaaacacaa-----attta---------tcaaca 296  Q
    ||||||||||||||||||||           |||||| |||||||||||||||||||||||||||||||||||||     || ||         ||||||    
T  31943975 aaaacagcaaacattcaacattttttttttgaaggactaaactcatgaaatcaagtaaaatataagaaaacacaagtaaaatataagcaaacattcaaca 31944074  T
Q  297 ttgaatnnnnnnnnntagaaaccttgacataagcattatcgtccagcttatacaaaatcccatcaactttcgcttcacggtagtgaaacttcgccttcaa 396  Q
    ||||||         |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||    
T  31944075 ttgaataaaaaaaaatagaaaccttgacataagcattatcgtccagcttatacaaaatcccatcaactttcgcttcacggtagtgaaacttcgccttgaa 31944174  T
Q  397 actttcatcatcactcgattcactacaaaacacaatcatataatattaattttcaaatcttgcaataacaca 468  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  31944175 actttcatcatcactcgattcactacaaaacacaatcatataacattaattttcaaatcttgcaataacaca 31944246  T

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Target: chr6; HSP #2
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 497 - 574
Target Start/End: Original strand, 31944275 - 31944352
Alignment:
Q  497 ctcactcgttcttggtgtatcggtgaggccatttcttttgagcttcattggccggaataggttctccgatgaagcatg 574  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  31944275 ctcactcgttcttggtgtatcggtgaggccatttcttttgagcttcatcggccggaataggttctccgatgaagcatg 31944352  T

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Target: chr5 (Bit Score: 117; Significance: 3e-59; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 117; E-Value: 3e-59
Query Start/End: Original strand, 312 - 468
Target Start/End: Original strand, 9394578 - 9394734
Alignment:
Q  312 tagaaaccttgacataagcattatcgtccagcttatacaaaatcccatcaactttcgcttcacggtagtgaaacttcgccttcaaactttcatcatcact 411  Q
    ||||||||||||||||||||||||| ||||||||||| |||||||||||||| || |||||||||||||||||||| ||||||||||||||||| |||||    
T  9394578 tagaaaccttgacataagcattatcctccagcttatataaaatcccatcaaccttggcttcacggtagtgaaactttgccttcaaactttcatcctcact 9394677  T
Q  412 cgattcactacaaaacacaatcatataatattaattttcaaatcttgcaataacaca 468  Q
    |||||||||||||||||||||||||||  | ||| ||||||||||||||||||||||    
T  9394678 cgattcactacaaaacacaatcatatagcagtaaatttcaaatcttgcaataacaca 9394734  T

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Target: chr5; HSP #2
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 497 - 574
Target Start/End: Original strand, 9394767 - 9394844
Alignment:
Q  497 ctcactcgttcttggtgtatcggtgaggccatttcttttgagcttcattggccggaataggttctccgatgaagcatg 574  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||| ||| ||||    
T  9394767 ctcactcgttcttggtgtatcggtgaggccatttcttttgagcttcatcagccggaataggttctccgacgaaacatg 9394844  T

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Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 145 - 233
Target Start/End: Original strand, 9394445 - 9394534
Alignment:
Q  145 tttcaacataaa-tcaaacaaaataacataaacaccgaattttcaacatgcaatcatagaaataaatcctaaaacagcaaacattcaaca 233  Q
    |||||||||||| ||||||||||||||||||| ||  | ||  ||||||| ||||| ||||||||| ||||||||| ||||  |||||||    
T  9394445 tttcaacataaaatcaaacaaaataacataaaaacacagttgccaacatgaaatcaaagaaataaaccctaaaacatcaaattttcaaca 9394534  T

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Target: chr7 (Bit Score: 101; Significance: 9e-50; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 101; E-Value: 9e-50
Query Start/End: Original strand, 254 - 436
Target Start/End: Original strand, 1342060 - 1342243
Alignment:
Q  254 catgaaatcaagtaaaatataagaaaa-cacaaatttatcaacattgaatnnnnnnnnntagaaaccttgacataagcattatcgtccagcttatacaaa 352  Q
    |||||||| |||||||||| || |||| |||||||||||||||||| |||         ||||||||||||||||||||||||| ||||||||||| |||    
T  1342060 catgaaataaagtaaaataaaacaaaagcacaaatttatcaacatttaataaaataaaatagaaaccttgacataagcattatcctccagcttatataaa 1342159  T
Q  353 atcccatcaactttcgcttcacggtagtgaaacttcgccttcaaactttcatcatcactcgattcactacaaaacacaatcata 436  Q
    ||||||||||| ||||||||| | ||||||||||||||||||||||||||| | |||||| |||||||||||||||||||||||    
T  1342160 atcccatcaaccttcgcttcatgatagtgaaacttcgccttcaaactttcaccctcactcaattcactacaaaacacaatcata 1342243  T

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Target: chr7; HSP #2
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 497 - 574
Target Start/End: Original strand, 1342324 - 1342401
Alignment:
Q  497 ctcactcgttcttggtgtatcggtgaggccatttcttttgagcttcattggccggaataggttctccgatgaagcatg 574  Q
    ||||||||||||||||||| |||||||||||||||||||| |||||||  ||||||||||||||||||| ||| ||||    
T  1342324 ctcactcgttcttggtgtaccggtgaggccatttcttttgtgcttcatcagccggaataggttctccgacgaaacatg 1342401  T

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Target: chr7; HSP #3
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 17 - 115
Target Start/End: Original strand, 1341881 - 1341981
Alignment:
Q  17 atgaaccataaaacaaacaattttcagcatgaaatcatgtc-aattaaaatataatttccaacatgaagaaataaaccct-gaaaacaaaattttcaaca 114  Q
    ||||||||||||||| |||||||| |||| ||||||||||| ||  ||||| |||||||||||| |||||||||||||||  ||||||||||||| ||||    
T  1341881 atgaaccataaaacacacaattttaagcaagaaatcatgtcaaagaaaaatttaatttccaacaagaagaaataaaccctaaaaaacaaaattttgaaca 1341980  T
Q  115 t 115  Q
    |    
T  1341981 t 1341981  T

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Target: chr7; HSP #4
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 154 - 224
Target Start/End: Original strand, 1341983 - 1342052
Alignment:
Q  154 aaatcaaacaaaataacataa-acaccgaattttcaacatgcaatcatagaaataaatcctaaaacagcaaa 224  Q
    ||||||||||||||||||||| ||||  ||||||||||||||||||| ||||||||| ||||||||| ||||    
T  1341983 aaatcaaacaaaataacataatacac--aattttcaacatgcaatcaaagaaataaaccctaaaacaccaaa 1342052  T

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Target: chr2 (Bit Score: 63; Significance: 4e-27; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 312 - 406
Target Start/End: Original strand, 35535403 - 35535497
Alignment:
Q  312 tagaaaccttgacataagcattatcgtccagcttatacaaaatcccatcaactttcgcttcacggtagtgaaacttcgccttcaaactttcatca 406  Q
    ||||||||||||||||||||||||  ||||| ||||| | || |||||||||||||||||||||||| ||||||| |||||||||||||||||||    
T  35535403 tagaaaccttgacataagcattattatccagattatatataaccccatcaactttcgcttcacggtaatgaaactacgccttcaaactttcatca 35535497  T

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Target: chr4 (Bit Score: 48; Significance: 4e-18; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 316 - 427
Target Start/End: Original strand, 5644299 - 5644410
Alignment:
Q  316 aaccttgacataagcattatcgtccagcttatacaaaatcccatcaactttcgcttcacggtagtgaaacttcgccttcaaactttcatcatcactcgat 415  Q
    |||||| |||||||||||||| | ||||||||| | || ||||||||| ||| |||||||||| ||||||||||||||||   | ||||||||||||||     
T  5644299 aaccttaacataagcattatcattcagcttatatataaccccatcaacattcacttcacggtaatgaaacttcgccttcactgtatcatcatcactcgaa 5644398  T
Q  416 tcactacaaaac 427  Q
     ||||| |||||    
T  5644399 ccactagaaaac 5644410  T

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