View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15982_low_41 (Length: 280)
Name: NF15982_low_41
Description: NF15982
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15982_low_41 |
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Alignment Details
Target: chr7 (Bit Score: 261; Significance: 1e-145; HSPs: 6)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 261; E-Value: 1e-145
Query Start/End: Original strand, 1 - 261
Target Start/End: Original strand, 33395639 - 33395899
Alignment:
| Q |
1 |
atttctgatgtctgcacgctagcagcccatggcgcatttgaaggtggtgctgcttcaggagtcggcacaggtgagggtgacggggaggctgaaggtgagg |
100 |
Q |
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| T |
33395639 |
atttctgatgtctgcacgctagcagcccatggcgcatttgaaggtggtgctgcttcaggagtcggcacaggtgagggtgacggggaggctgaaggtgagg |
33395738 |
T |
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| Q |
101 |
gtactggagaccaaccaaactgtggtggctgcacgtttatgaaaagcttttggccaagattgcagtgatgagcagcacctgaaatgtaccatcttcttcc |
200 |
Q |
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| T |
33395739 |
gtactggagaccaaccaaactgtggtggctgcacgtttatgaaaagcttttggccaagattgcagtgatgagcagcacctgaaatgtaccatcttcttcc |
33395838 |
T |
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| Q |
201 |
ataggttgtcaataaaattgtatcatgtccactagttaacactggtgctctccaaggaatt |
261 |
Q |
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| T |
33395839 |
ataggttgtcaataaaattgtatcatgtccactagttaacactggtgctctccaaggaatt |
33395899 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 4 - 259
Target Start/End: Original strand, 33399526 - 33399784
Alignment:
| Q |
4 |
tctgatgtctgcacgctagcagcccatggcgcatttgaaggtggtgctgcttcaggagtcggcacaggtgagggtgacggggaggctgaaggt---gagg |
100 |
Q |
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| T |
33399526 |
tctgatgtctgcacgctagcagcccatggtgcatttgaaggcggtgctgcttcaggggccggcacaggtgagggtgagggggaggctgaaggtgaggagg |
33399625 |
T |
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| Q |
101 |
gtactggagaccaaccaaactgtggtggctgcacgtttatgaaaagcttttggccaagattgcagtgatgagcagcacctgaaatgtaccatcttcttcc |
200 |
Q |
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| T |
33399626 |
gtgctggataccaaccatcttgttttggtaaaacatttatgaaaagcttttgtccattttcgcagtgattggcaacacctgaaatgtaccatcttctccc |
33399725 |
T |
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| Q |
201 |
ataggttgtcaataaaattgtatcatgtccactagttaacactggtgctctccaaggaa |
259 |
Q |
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| T |
33399726 |
ataggttgtcaatgcaattttatcatgtccacttgttaacactggtgctgcccaaggaa |
33399784 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 91 - 259
Target Start/End: Original strand, 33441932 - 33442100
Alignment:
| Q |
91 |
gaaggtgagggtactggagaccaaccaaactgtggtggctgcacgtttatgaaaagcttttggccaagattgcagtgatgagcagcacctgaaatgtacc |
190 |
Q |
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| T |
33441932 |
gaaggtgaaggtactggagaccaaccatcttgttttggctgcacagttatgaaaagcttttgtccattttcgcagtgatcggtaacacttgaaatgtacc |
33442031 |
T |
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| Q |
191 |
atcttcttccataggttgtcaataaaattgtatcatgtccactagttaacactggtgctctccaaggaa |
259 |
Q |
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| T |
33442032 |
atcttctcccataggttgtaattataattttgtcttgcccactggttaacacaggtgctgtcaaaggaa |
33442100 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 91 - 259
Target Start/End: Original strand, 33452152 - 33452320
Alignment:
| Q |
91 |
gaaggtgagggtactggagaccaaccaaactgtggtggctgcacgtttatgaaaagcttttggccaagattgcagtgatgagcagcacctgaaatgtacc |
190 |
Q |
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| T |
33452152 |
gaaggtgaaggtactggagaccaaccatcttgttttggctgcacagttatgaaaagcttttgtccattttcgcagtgatcggtaacacttgaaatgtacc |
33452251 |
T |
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| Q |
191 |
atcttcttccataggttgtcaataaaattgtatcatgtccactagttaacactggtgctctccaaggaa |
259 |
Q |
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| T |
33452252 |
atcttctcccataggttgtaattataattttgtcttgcccactggttaacacaggtgctgtcaaaggaa |
33452320 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 4 - 59
Target Start/End: Original strand, 33399427 - 33399482
Alignment:
| Q |
4 |
tctgatgtctgcacgctagcagcccatggcgcatttgaaggtggtgctgcttcagg |
59 |
Q |
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| T |
33399427 |
tctgatgcctgcacgctagcaacccatggtgcatttgaaggaggtgcggcttcagg |
33399482 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 4 - 57
Target Start/End: Original strand, 33395543 - 33395596
Alignment:
| Q |
4 |
tctgatgtctgcacgctagcagcccatggcgcatttgaaggtggtgctgcttca |
57 |
Q |
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| T |
33395543 |
tctgatgtctgcgcgccagcagcccatggtgcatttgaagacggtgctgcttca |
33395596 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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