View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15982_low_42 (Length: 274)
Name: NF15982_low_42
Description: NF15982
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15982_low_42 |
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Alignment Details
Target: chr6 (Bit Score: 220; Significance: 1e-121; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 13 - 260
Target Start/End: Complemental strand, 31232676 - 31232429
Alignment:
| Q |
13 |
aaaatgtggaaagtcacaataaagcatgcaatgacttgtgacttgggaagcaagatctataggtaccgtggacctcaatttatcattcttctgaatccaa |
112 |
Q |
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| T |
31232676 |
aaaatgtggaaagtcacaataaagcatgcaatgacttgtgacatggggagcaagatctatagataccgtggacctcaatttatcatacttctgaatccaa |
31232577 |
T |
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| Q |
113 |
tatgcaaattaattaaagctaatatcaatggacaagaattttccagcagagagtacttgagccaaatgaataaggtacaatattaaccatctactactca |
212 |
Q |
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|||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
31232576 |
tatgaaaattaataaaagctaatatcaatggacaagaattttccagcagagagtacttgaaccaaatgaataaggtacaatattaaccatctactactca |
31232477 |
T |
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| Q |
213 |
agactcacatttgtagtattactttaatttgttgattacactatatgc |
260 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31232476 |
agactcacatttgtagtattactttaatttgttgattacactatatgc |
31232429 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 178; E-Value: 4e-96
Query Start/End: Original strand, 13 - 235
Target Start/End: Complemental strand, 31241646 - 31241422
Alignment:
| Q |
13 |
aaaatgtggaaagtcacaataaagcatgcaatgacttgtgacttgggaagcaagatctataggtaccgtggacctcaatttatcattcttctgaatccaa |
112 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||| ||||||||||||||||||||||| ||||||||||||| |
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| T |
31241646 |
aaaatgtggaaagtcacaataaagcatgcaatgacttgtgacatggggagcaagatctatagataccgtggacctcaatttatcatacttctgaatccaa |
31241547 |
T |
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| Q |
113 |
tatgcaaattaattaaagctaatatcaatggacaagaattttccagcagagagtacttgagccaaatgaataaggtaca--atattaaccatctactact |
210 |
Q |
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|||| ||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
31241546 |
tatgtaaatttatcaaagctaatatcaatggacaagaattttccagcagagagtacttgagccaaatgaataaggtacaatatattaaccatctactact |
31241447 |
T |
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| Q |
211 |
caagactcacatttgtagtattact |
235 |
Q |
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|||| ||||||||||||||||||| |
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| T |
31241446 |
aaagattcacatttgtagtattact |
31241422 |
T |
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