View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15982_low_43 (Length: 273)
Name: NF15982_low_43
Description: NF15982
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15982_low_43 |
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| [»] scaffold0083 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 231; Significance: 1e-127; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 1 - 263
Target Start/End: Complemental strand, 11480011 - 11479749
Alignment:
| Q |
1 |
taaatttattattcttttacttagcataataagccacatatttgaaccatgacaaccatttaaaaagttatggttaaaatagacaaattttaattattca |
100 |
Q |
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| T |
11480011 |
taaatttattattcttttacttagcataataagccacatatttaaaccatgagaaccatttaaaaagttgtggttaaaatagacaaaatttaattgttga |
11479912 |
T |
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| Q |
101 |
aataacacaacttatttagttttaagctactcaatgctgcaatattttcatgtacgtaggcaccatgtaacttcaaagtagtattcaaaagttaacactt |
200 |
Q |
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| T |
11479911 |
aataacacaacttatttagttttaagctactcaatgctgcaatattttcatgtatgtaggcaccatgtaacttcaaagtagtattcaaaagttaacactt |
11479812 |
T |
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| Q |
201 |
attgtgataatttaatgtcacctgtccatatagagttgatccaattgcacctgaatgatgatg |
263 |
Q |
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| T |
11479811 |
attgtgataatttaatgtcacctgtccatatagagttgatccaattgcacctgaatgctgatg |
11479749 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 177 - 263
Target Start/End: Complemental strand, 11485930 - 11485843
Alignment:
| Q |
177 |
agtagtattcaaaagttaacacttattgtgataatttaatgt-cacctgtccatatagagttgatccaattgcacctgaatgatgatg |
263 |
Q |
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| T |
11485930 |
agtagcattcaaatattaacaatgattgcaattatttaatgttcacctttccatatagagttgatccaattgcacctgaatgctgatg |
11485843 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 218 - 263
Target Start/End: Complemental strand, 11473617 - 11473572
Alignment:
| Q |
218 |
tcacctgtccatatagagttgatccaattgcacctgaatgatgatg |
263 |
Q |
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| T |
11473617 |
tcacctttccatatagagttgatccaattgcacctgaatgttgatg |
11473572 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 86 - 126
Target Start/End: Complemental strand, 11474491 - 11474451
Alignment:
| Q |
86 |
aattttaattattcaaataacacaacttatttagttttaag |
126 |
Q |
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| T |
11474491 |
aattttaatttttcaaataacacaacttatttatttttaag |
11474451 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 44; Significance: 4e-16; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 210 - 253
Target Start/End: Complemental strand, 21547415 - 21547372
Alignment:
| Q |
210 |
atttaatgtcacctgtccatatagagttgatccaattgcacctg |
253 |
Q |
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| T |
21547415 |
atttaatgtcacctgtccatatagagttgatccaattgcacctg |
21547372 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0083 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: scaffold0083
Description:
Target: scaffold0083; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 210 - 253
Target Start/End: Complemental strand, 48462 - 48419
Alignment:
| Q |
210 |
atttaatgtcacctgtccatatagagttgatccaattgcacctg |
253 |
Q |
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| T |
48462 |
atttaatgtcacctgtccatatagagttgatccaattgaacctg |
48419 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 32; Significance: 0.000000006; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 220 - 263
Target Start/End: Original strand, 38214003 - 38214046
Alignment:
| Q |
220 |
acctgtccatatagagttgatccaattgcacctgaatgatgatg |
263 |
Q |
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| T |
38214003 |
acctgtccatatagagttgatccaattccgcctgaatgctgatg |
38214046 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 220 - 263
Target Start/End: Original strand, 38237921 - 38237964
Alignment:
| Q |
220 |
acctgtccatatagagttgatccaattgcacctgaatgatgatg |
263 |
Q |
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| T |
38237921 |
acctgtccatatagagttgatccaattccgcctgaatgttgatg |
38237964 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 220 - 264
Target Start/End: Original strand, 38242896 - 38242940
Alignment:
| Q |
220 |
acctgtccatatagagttgatccaattgcacctgaatgatgatgt |
264 |
Q |
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| T |
38242896 |
acctgtccatatagggtggatccaattccacctgaatgctgatgt |
38242940 |
T |
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