View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15982_low_46 (Length: 265)
Name: NF15982_low_46
Description: NF15982
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15982_low_46 |
 | |
|
| [»] scaffold0640 (1 HSPs) |
| | |
|
| [»] scaffold0271 (1 HSPs) |
| | |
|
| [»] scaffold0274 (2 HSPs) |
| | |
|
| [»] scaffold0648 (1 HSPs) |
| | |
|
Alignment Details
Target: scaffold0640 (Bit Score: 238; Significance: 1e-132; HSPs: 1)
Name: scaffold0640
Description:
Target: scaffold0640; HSP #1
Raw Score: 238; E-Value: 1e-132
Query Start/End: Original strand, 1 - 246
Target Start/End: Complemental strand, 7078 - 6833
Alignment:
| Q |
1 |
atagtattgaacttaagagtatttcacgcaccatgtaagttaactaacacatttgatctcaaaacaatgcaactcatttagattctggtttaacttttaa |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
7078 |
atagtattgaacttaagagtatttcacgcaccatgtaagttaactaacacatttgatctcaaaacaacgcaactcatttagattctggtttaacttttaa |
6979 |
T |
|
| Q |
101 |
agtaggtcacccactccataatctgtcaaagttgtttaactttacaatcgaagtaacatagagcttgtcacccactctatcaataaaccgatagtatgca |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6978 |
agtaggtcacccactccataatctgtcaaagttgtttaactttacaatcgaagtaacatagagcttgtcacccactctatcaataaaccgatagtatgca |
6879 |
T |
|
| Q |
201 |
tgcctccattttgtaatgagaaacaaagaaccgaaaatccctcaga |
246 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
6878 |
tgcctccattttgtaatgagaaacaaagaaccgaaaatcccccaga |
6833 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0271 (Bit Score: 234; Significance: 1e-129; HSPs: 1)
Name: scaffold0271
Description:
Target: scaffold0271; HSP #1
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 1 - 246
Target Start/End: Complemental strand, 12176 - 11931
Alignment:
| Q |
1 |
atagtattgaacttaagagtatttcacgcaccatgtaagttaactaacacatttgatctcaaaacaatgcaactcatttagattctggtttaacttttaa |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
12176 |
atagtattgaacttaagagtatttcacgcaccatgtaagttaactaacacatttgatctcaaaacaacgcaactcatttagattctggtttaacttttat |
12077 |
T |
|
| Q |
101 |
agtaggtcacccactccataatctgtcaaagttgtttaactttacaatcgaagtaacatagagcttgtcacccactctatcaataaaccgatagtatgca |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
12076 |
agtaggtcacccactccataatctgtcaaagttgtttaactttacaatcgaagtaacatagagcttgtcacccactctatcaataaaccgatagtatgca |
11977 |
T |
|
| Q |
201 |
tgcctccattttgtaatgagaaacaaagaaccgaaaatccctcaga |
246 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
11976 |
tgcctccattttgtaatgagaaacaaagaaccgaaaatcccccaga |
11931 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0274 (Bit Score: 230; Significance: 1e-127; HSPs: 2)
Name: scaffold0274
Description:
Target: scaffold0274; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 1 - 246
Target Start/End: Original strand, 1896 - 2140
Alignment:
| Q |
1 |
atagtattgaacttaagagtatttcacgcaccatgtaagttaactaacacatttgatctcaaaacaatgcaactcatttagattctggtttaacttttaa |
100 |
Q |
| |
|
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
1896 |
atagtattgaactta-gagtatttcacgcaccatgtaagttaactaacacatttgatctcaaaacaacgcaactcatttagattctggtttaacttttaa |
1994 |
T |
|
| Q |
101 |
agtaggtcacccactccataatctgtcaaagttgtttaactttacaatcgaagtaacatagagcttgtcacccactctatcaataaaccgatagtatgca |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1995 |
agtaggtcacccactccataatctgtcaaagttgtttaactttacaatcgaagtaacatagagcttgtcacccactctatcaataaaccgatagtatgca |
2094 |
T |
|
| Q |
201 |
tgcctccattttgtaatgagaaacaaagaaccgaaaatccctcaga |
246 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
2095 |
tgcctccattttgtaatgagaaacaaagaaccgaaaatcccccaga |
2140 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0274; HSP #2
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 5 - 246
Target Start/End: Complemental strand, 22256 - 22016
Alignment:
| Q |
5 |
tattgaacttaagagtatttcacgcaccatgtaagttaactaacacatttgatctcaaaacaatgcaactcatttagattctggtttaacttttaaagta |
104 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||| |
|
|
| T |
22256 |
tattgaactta-gagtatttcacgcaccatgtaagttaactaacacatttgatctcaaaacaacgcaactcatttagattctggtttaacttttatagta |
22158 |
T |
|
| Q |
105 |
ggtcacccactccataatctgtcaaagttgtttaactttacaatcgaagtaacatagagcttgtcacccactctatcaataaaccgatagtatgcatgcc |
204 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
22157 |
ggtcacccactccataatctgtcaaagttgtttaactttacaatcgaagtaacatagagcttgtcacccactctatcaataaaccgatagtatgcatgcc |
22058 |
T |
|
| Q |
205 |
tccattttgtaatgagaaacaaagaaccgaaaatccctcaga |
246 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||||| |||| |
|
|
| T |
22057 |
tccattttgtaatgagaaacaaagaaccaaaaatcccccaga |
22016 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0648 (Bit Score: 226; Significance: 1e-124; HSPs: 1)
Name: scaffold0648
Description:
Target: scaffold0648; HSP #1
Raw Score: 226; E-Value: 1e-124
Query Start/End: Original strand, 1 - 238
Target Start/End: Original strand, 2424 - 2661
Alignment:
| Q |
1 |
atagtattgaacttaagagtatttcacgcaccatgtaagttaactaacacatttgatctcaaaacaatgcaactcatttagattctggtttaacttttaa |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
2424 |
atagtattgaacttaagagtatttcacgcaccatgtaagttaactaacacatttgatctcaaaacaacgcaactcatttagattctggtttaacttttat |
2523 |
T |
|
| Q |
101 |
agtaggtcacccactccataatctgtcaaagttgtttaactttacaatcgaagtaacatagagcttgtcacccactctatcaataaaccgatagtatgca |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2524 |
agtaggtcacccactccataatctgtcaaagttgtttaactttacaatcgaagtaacatagagcttgtcacccactctatcaataaaccgatagtatgca |
2623 |
T |
|
| Q |
201 |
tgcctccattttgtaatgagaaacaaagaaccgaaaat |
238 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
2624 |
tgcctccattttgtaatgagaaacaaagaaccaaaaat |
2661 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 71; Significance: 3e-32; HSPs: 28)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 127 - 241
Target Start/End: Original strand, 14894841 - 14894955
Alignment:
| Q |
127 |
caaagttgtttaactttacaatcgaagtaacatagagcttgtcacccactctatcaataaaccgatagtatgcatgcctccattttgtaatgagaaacaa |
226 |
Q |
| |
|
||||||||||||||||| ||| |||||||||||||||||||||| |||| ||||||||||||| |||||||||||||||||||| |||| |||||||| |
|
|
| T |
14894841 |
caaagttgtttaactttgggatcaaagtaacatagagcttgtcacctactccatcaataaaccgaaagtatgcatgcctccattttctaataagaaacaa |
14894940 |
T |
|
| Q |
227 |
agaaccgaaaatccc |
241 |
Q |
| |
|
|||||| ||||||| |
|
|
| T |
14894941 |
agaaccagaaatccc |
14894955 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 134 - 246
Target Start/End: Complemental strand, 19355257 - 19355145
Alignment:
| Q |
134 |
gtttaactttacaatcgaagtaacatagagcttgtcacccactctatcaataaaccgatagtatgcatgcctccattttgtaatgagaaacaaagaaccg |
233 |
Q |
| |
|
|||||||||||| ||| |||||||||||| |||||||| ||||||||||| ||||||| |||||||||||||||||||| |||| ||||||||||||| | |
|
|
| T |
19355257 |
gtttaactttacgatcaaagtaacatagatcttgtcacgcactctatcaacaaaccgaaagtatgcatgcctccattttctaattagaaacaaagaacgg |
19355158 |
T |
|
| Q |
234 |
aaaatccctcaga |
246 |
Q |
| |
|
||||||| |||| |
|
|
| T |
19355157 |
caaatcccccaga |
19355145 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 135 - 246
Target Start/End: Original strand, 17725996 - 17726107
Alignment:
| Q |
135 |
tttaactttacaatcgaagtaacatagagcttgtcacccactctatcaataaaccgatagtatgcatgcctccattttgtaatgagaaacaaagaaccga |
234 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||||| |||| ||||||||||| | |||||||||||||||||||| |||| |||||||||||||| |
|
|
| T |
17725996 |
tttaactttacaattaaagtaacatagagcttgtcacctactccatcaataaaccaaaagtatgcatgcctccattttctaataagaaacaaagaaccac |
17726095 |
T |
|
| Q |
235 |
aaatccctcaga |
246 |
Q |
| |
|
||||||| |||| |
|
|
| T |
17726096 |
aaatcccccaga |
17726107 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 135 - 246
Target Start/End: Complemental strand, 18166697 - 18166586
Alignment:
| Q |
135 |
tttaactttacaatcgaagtaacatagagcttgtcacccactctatcaataaaccgatagtatgcatgcctccattttgtaatgagaaacaaagaaccga |
234 |
Q |
| |
|
||||||||||| || |||||||||||||||||||||| |||||||||||||||||| |||||||||| ||||||||| |||| |||||||||||||| |
|
|
| T |
18166697 |
tttaactttacgttcaaagtaacatagagcttgtcaccaactctatcaataaaccgaaagtatgcatgtctccattttctaataagaaacaaagaaccac |
18166598 |
T |
|
| Q |
235 |
aaatccctcaga |
246 |
Q |
| |
|
||||||| |||| |
|
|
| T |
18166597 |
aaatcccccaga |
18166586 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 135 - 246
Target Start/End: Original strand, 19027225 - 19027336
Alignment:
| Q |
135 |
tttaactttacaatcgaagtaacatagagcttgtcacccactctatcaataaaccgatagtatgcatgcctccattttgtaatgagaaacaaagaaccga |
234 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||||| |||| ||||||||||| | |||||||||||||||||||| |||| |||||||||||||| |
|
|
| T |
19027225 |
tttaactttacaattaaagtaacatagagcttgtcacctactccatcaataaaccaaaagtatgcatgcctccattttctaataagaaacaaagaaccac |
19027324 |
T |
|
| Q |
235 |
aaatccctcaga |
246 |
Q |
| |
|
||||||| |||| |
|
|
| T |
19027325 |
aaatcccccaga |
19027336 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 133 - 246
Target Start/End: Complemental strand, 19377162 - 19377049
Alignment:
| Q |
133 |
tgtttaactttacaatcgaagtaacatagagcttgtcacccactctatcaataaaccgatagtatgcatgcctccattttgtaatgagaaacaaagaacc |
232 |
Q |
| |
|
||||||||||||| ||| ||||||||||||| |||||||| ||||||| ||||||| || ||||||||||||||||||| |||| |||||||||||||| |
|
|
| T |
19377162 |
tgtttaactttacgatcaaagtaacatagagtttgtcacctactctattaataaactgaaagtatgcatgcctccatttcctaataagaaacaaagaacc |
19377063 |
T |
|
| Q |
233 |
gaaaatccctcaga |
246 |
Q |
| |
|
| ||||||| |||| |
|
|
| T |
19377062 |
gcaaatcccccaga |
19377049 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 135 - 241
Target Start/End: Complemental strand, 17943495 - 17943389
Alignment:
| Q |
135 |
tttaactttacaatcgaagtaacatagagcttgtcacccactctatcaataaaccgatagtatgcatgcctccattttgtaatgagaaacaaagaaccga |
234 |
Q |
| |
|
||||||||||| ||| ||||||||||||| ||||| ||||||||||||||||||||| || ||||||||||||||||| |||| | |||||||||||| |
|
|
| T |
17943495 |
tttaactttacgatcaaagtaacatagagtttgtcgcccactctatcaataaaccgaaagcatgcatgcctccattttctaataaaaaacaaagaaccac |
17943396 |
T |
|
| Q |
235 |
aaatccc |
241 |
Q |
| |
|
||||||| |
|
|
| T |
17943395 |
aaatccc |
17943389 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 133 - 246
Target Start/End: Complemental strand, 19335555 - 19335442
Alignment:
| Q |
133 |
tgtttaactttacaatcgaagtaacatagagcttgtcacccactctatcaataaaccgatagtatgcatgcctccattttgtaatgagaaacaaagaacc |
232 |
Q |
| |
|
|||| |||||||| ||| |||||||||||| ||||||||||||||||| || ||||||| |||| ||||||||||||||| |||| |||||||||||||| |
|
|
| T |
19335555 |
tgttcaactttacgatcaaagtaacatagatcttgtcacccactctataaacaaaccgaaagtaagcatgcctccattttctaataagaaacaaagaacc |
19335456 |
T |
|
| Q |
233 |
gaaaatccctcaga |
246 |
Q |
| |
|
||||||| |||| |
|
|
| T |
19335455 |
acaaatcccccaga |
19335442 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #9
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 135 - 241
Target Start/End: Complemental strand, 18105037 - 18104931
Alignment:
| Q |
135 |
tttaactttacaatcgaagtaacatagagcttgtcacccactctatcaataaaccgatagtatgcatgcctccattttgtaatgagaaacaaagaaccga |
234 |
Q |
| |
|
||||||||||| ||| ||||||||||||| | |||||||||||||| || |||||| ||||||||||||||||||| |||| ||||||| |||||||| |
|
|
| T |
18105037 |
tttaactttacgatcaaagtaacatagagatagtcacccactctattaactaaccgaaagtatgcatgcctccatttcctaataagaaacatagaaccga |
18104938 |
T |
|
| Q |
235 |
aaatccc |
241 |
Q |
| |
|
||||||| |
|
|
| T |
18104937 |
aaatccc |
18104931 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #10
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 128 - 246
Target Start/End: Complemental strand, 25464601 - 25464483
Alignment:
| Q |
128 |
aaagttgtttaactttacaatcgaagtaacatagagcttgtcacccactctatcaataaaccgatagtatgcatgcctccattttgtaatgagaaacaaa |
227 |
Q |
| |
|
||||| |||||||||||| ||| ||||||||||||| ||||||| ||||| || |||||||||| ||||||||||||||||||| |||| | ||||||| |
|
|
| T |
25464601 |
aaagtggtttaactttacgatcaaagtaacatagagtttgtcactcactccattaataaaccgaaagtatgcatgcctccatttcctaataaaaaacaaa |
25464502 |
T |
|
| Q |
228 |
gaaccgaaaatccctcaga |
246 |
Q |
| |
|
||||| ||||||| |||| |
|
|
| T |
25464501 |
gaaccacaaatcccccaga |
25464483 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #11
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 134 - 246
Target Start/End: Complemental strand, 19426232 - 19426120
Alignment:
| Q |
134 |
gtttaactttacaatcgaagtaacatagagcttgtcacccactctatcaataaaccgatagtatgcatgcctccattttgtaatgagaaacaaagaaccg |
233 |
Q |
| |
|
|||||||||||| ||| |||||||||||| ||| |||| ||||||||||| ||||||| ||||||||||| |||||||| |||| || ||||||||||| |
|
|
| T |
19426232 |
gtttaactttacgatcaaagtaacatagatcttatcacgcactctatcaacaaaccgaaagtatgcatgcttccattttctaataaggaacaaagaacca |
19426133 |
T |
|
| Q |
234 |
aaaatccctcaga |
246 |
Q |
| |
|
||||||| |||| |
|
|
| T |
19426132 |
caaatcccccaga |
19426120 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #12
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 135 - 246
Target Start/End: Complemental strand, 18117497 - 18117386
Alignment:
| Q |
135 |
tttaactttacaatcgaagtaacatagagcttgtcacccactctatcaataaaccgatagtatgcatgcctccattttgtaatgagaaacaaagaaccga |
234 |
Q |
| |
|
||||||||||| ||| ||||||||||||| | ||||||||||||||||| |||||| |||| |||||||||||||| |||| ||||||| |||||| |
|
|
| T |
18117497 |
tttaactttacgatcaaagtaacatagagatagtcacccactctatcaactaaccgaaagtacgcatgcctccatttcctaataagaaacatagaaccac |
18117398 |
T |
|
| Q |
235 |
aaatccctcaga |
246 |
Q |
| |
|
||||||| |||| |
|
|
| T |
18117397 |
aaatcccccaga |
18117386 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #13
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 135 - 246
Target Start/End: Complemental strand, 18148359 - 18148248
Alignment:
| Q |
135 |
tttaactttacaatcgaagtaacatagagcttgtcacccactctatcaataaaccgatagtatgcatgcctccattttgtaatgagaaacaaagaaccga |
234 |
Q |
| |
|
||||||||||| ||| |||||||||||| | ||||||||||||||||| |||||| |||| |||||||||||||| |||| |||||||||||||| |
|
|
| T |
18148359 |
tttaactttacgatcacagtaacatagagatagtcacccactctatcaactaaccgaaagtacgcatgcctccatttcctaataagaaacaaagaaccac |
18148260 |
T |
|
| Q |
235 |
aaatccctcaga |
246 |
Q |
| |
|
||||||| |||| |
|
|
| T |
18148259 |
aaatcccccaga |
18148248 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #14
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 135 - 246
Target Start/End: Original strand, 18872337 - 18872448
Alignment:
| Q |
135 |
tttaactttacaatcgaagtaacatagagcttgtcacccactctatcaataaaccgatagtatgcatgcctccattttgtaatgagaaacaaagaaccga |
234 |
Q |
| |
|
|||||||||| ||| |||||||||||||||||||||| |||| || ||||||| | ||||||||||||||||||| |||| |||||||||||||| |
|
|
| T |
18872337 |
tttaactttatcatcaaagtaacatagagcttgtcacctactccatatataaaccaaaagtatgcatgcctccatttcctaataagaaacaaagaaccac |
18872436 |
T |
|
| Q |
235 |
aaatccctcaga |
246 |
Q |
| |
|
||||||| |||| |
|
|
| T |
18872437 |
aaatcccccaga |
18872448 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #15
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 135 - 246
Target Start/End: Complemental strand, 19401267 - 19401156
Alignment:
| Q |
135 |
tttaactttacaatcgaagtaacatagagcttgtcacccactctatcaataaaccgatagtatgcatgcctccattttgtaatgagaaacaaagaaccga |
234 |
Q |
| |
|
||||||||||| ||| |||| ||||||||| ||| |||||||| || || |||||| | |||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
19401267 |
tttaactttaccatcaaagttacatagagcctgttacccactccatatatgaaccgaaaatatgcatgcctccattttctaatgagaaacaaagaaccac |
19401168 |
T |
|
| Q |
235 |
aaatccctcaga |
246 |
Q |
| |
|
||||||| |||| |
|
|
| T |
19401167 |
aaatcccccaga |
19401156 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #16
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 135 - 246
Target Start/End: Complemental strand, 19465893 - 19465782
Alignment:
| Q |
135 |
tttaactttacaatcgaagtaacatagagcttgtcacccactctatcaataaaccgatagtatgcatgcctccattttgtaatgagaaacaaagaaccga |
234 |
Q |
| |
|
||||||||||| || |||||||||||||||||||||| | || || ||||||||| ||||||||||||||||||| |||| |||||||||||||| |
|
|
| T |
19465893 |
tttaactttaccgtcaaagtaacatagagcttgtcacctattccatatataaaccgaaagtatgcatgcctccatttcctaataagaaacaaagaaccac |
19465794 |
T |
|
| Q |
235 |
aaatccctcaga |
246 |
Q |
| |
|
||||||| |||| |
|
|
| T |
19465793 |
aaatcccccaga |
19465782 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #17
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 122 - 232
Target Start/End: Complemental strand, 16678761 - 16678651
Alignment:
| Q |
122 |
tctgtcaaagttgtttaactttacaatcgaagtaacatagagcttgtcacccactctatcaataaaccgatagtatgcatgcctccattttgtaatgaga |
221 |
Q |
| |
|
||||| |||||| ||||||||||| ||| |||| ||||| |||||||| ||||||| ||||||||| ||||||||| ||||||||||| |||| ||| |
|
|
| T |
16678761 |
tctgtgaaagttatttaactttaccatcaaagttacatacagcttgtcgcccactccatcaataaattgatagtatgtgtgcctccatttcctaataaga |
16678662 |
T |
|
| Q |
222 |
aacaaagaacc |
232 |
Q |
| |
|
||||||||||| |
|
|
| T |
16678661 |
aacaaagaacc |
16678651 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #18
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 135 - 246
Target Start/End: Complemental strand, 17951364 - 17951253
Alignment:
| Q |
135 |
tttaactttacaatcgaagtaacatagagcttgtcacccactctatcaataaaccgatagtatgcatgcctccattttgtaatgagaaacaaagaaccga |
234 |
Q |
| |
|
||||||||||| || |||| ||||||||| ||| |||||||| || ||||||||| |||||||||||||||||||| ||| |||||||||||||| |
|
|
| T |
17951364 |
tttaactttaccttcaaagttacatagagcctgttacccactccatatataaaccgaaagtatgcatgcctccattttcgaataagaaacaaagaaccac |
17951265 |
T |
|
| Q |
235 |
aaatccctcaga |
246 |
Q |
| |
|
||||||| |||| |
|
|
| T |
17951264 |
aaatcccccaga |
17951253 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #19
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 135 - 246
Target Start/End: Complemental strand, 18017563 - 18017452
Alignment:
| Q |
135 |
tttaactttacaatcgaagtaacatagagcttgtcacccactctatcaataaaccgatagtatgcatgcctccattttgtaatgagaaacaaagaaccga |
234 |
Q |
| |
|
||||||||||| ||| |||| ||||| || ||| |||||||| || ||||||||| | |||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
18017563 |
tttaactttaccatcaaagttacataaagtctgttacccactccatatataaaccgaaaatatgcatgcctccattttctaatgagaaacaaagaaccac |
18017464 |
T |
|
| Q |
235 |
aaatccctcaga |
246 |
Q |
| |
|
||||||| |||| |
|
|
| T |
18017463 |
aaatcccccaga |
18017452 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #20
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 135 - 241
Target Start/End: Complemental strand, 19382434 - 19382328
Alignment:
| Q |
135 |
tttaactttacaatcgaagtaacatagagcttgtcacccactctatcaataaaccgatagtatgcatgcctccattttgtaatgagaaacaaagaaccga |
234 |
Q |
| |
|
||||||||||| || || ||||||||||||||||||| |||| || ||||||||| ||||||||||||||||||| |||| ||||| |||||||| |
|
|
| T |
19382434 |
tttaactttaccgtcaaaataacatagagcttgtcacctactccatagataaaccgaaagtatgcatgcctccatttcctaataagaaataaagaaccac |
19382335 |
T |
|
| Q |
235 |
aaatccc |
241 |
Q |
| |
|
||||||| |
|
|
| T |
19382334 |
aaatccc |
19382328 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #21
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 135 - 246
Target Start/End: Complemental strand, 19352933 - 19352822
Alignment:
| Q |
135 |
tttaactttacaatcgaagtaacatagagcttgtcacccactctatcaataaaccgatagtatgcatgcctccattttgtaatgagaaacaaagaaccga |
234 |
Q |
| |
|
||||||||||| || |||| ||||| ||| ||| |||||||| || ||||||||| | |||||||||||||||||| |||| |||||||||||||| |
|
|
| T |
19352933 |
tttaactttaccattaaagttacataaagcctgttacccactccatatataaaccgaaaatatgcatgcctccattttctaataagaaacaaagaaccac |
19352834 |
T |
|
| Q |
235 |
aaatccctcaga |
246 |
Q |
| |
|
||||||| |||| |
|
|
| T |
19352833 |
aaatcccccaga |
19352822 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #22
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 135 - 246
Target Start/End: Complemental strand, 19394690 - 19394579
Alignment:
| Q |
135 |
tttaactttacaatcgaagtaacatagagcttgtcacccactctatcaataaaccgatagtatgcatgcctccattttgtaatgagaaacaaagaaccga |
234 |
Q |
| |
|
||||||||||| || || ||||||||||||||||||| |||| || |||| |||| || |||||||||||||||| |||| |||||||||||||| |
|
|
| T |
19394690 |
tttaactttaccgtcaaaataacatagagcttgtcacctactccatatataacccgaaagcatgcatgcctccatttcctaataagaaacaaagaaccac |
19394591 |
T |
|
| Q |
235 |
aaatccctcaga |
246 |
Q |
| |
|
||||||| |||| |
|
|
| T |
19394590 |
aaatcccccaga |
19394579 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #23
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 135 - 246
Target Start/End: Complemental strand, 19415725 - 19415614
Alignment:
| Q |
135 |
tttaactttacaatcgaagtaacatagagcttgtcacccactctatcaataaaccgatagtatgcatgcctccattttgtaatgagaaacaaagaaccga |
234 |
Q |
| |
|
||||||||||| | | ||||||||||||| ||| | ||||||||||||||||||| ||||||||||||| |||||| |||| ||||| | |||||| |
|
|
| T |
19415725 |
tttaactttacgaccaaagtaacatagagattgccggccactctatcaataaaccggaagtatgcatgcctgcattttctaataagaaaaatagaaccac |
19415626 |
T |
|
| Q |
235 |
aaatccctcaga |
246 |
Q |
| |
|
||||||| |||| |
|
|
| T |
19415625 |
aaatcccccaga |
19415614 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #24
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 135 - 232
Target Start/End: Complemental strand, 19462721 - 19462624
Alignment:
| Q |
135 |
tttaactttacaatcgaagtaacatagagcttgtcacccactctatcaataaaccgatagtatgcatgcctccattttgtaatgagaaacaaagaacc |
232 |
Q |
| |
|
||||||||||| || ||||||||||||| ||||||||||||||||| |||||| |||| |||||||||||||| ||| |||||||||||||| |
|
|
| T |
19462721 |
tttaactttacggtcaaagtaacatagagaaagtcacccactctatcaactaaccgaaagtacgcatgcctccatttccgaataagaaacaaagaacc |
19462624 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #25
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 135 - 246
Target Start/End: Complemental strand, 19456837 - 19456726
Alignment:
| Q |
135 |
tttaactttacaatcgaagtaacatagagcttgtcacccactctatcaataaaccgatagtatgcatgcctccattttgtaatgagaaacaaagaaccga |
234 |
Q |
| |
|
||||||||||| ||| |||| ||||||| | ||| |||||||| || |||| || | ||||||||||||||||||| |||| |||||||||||||| |
|
|
| T |
19456837 |
tttaactttaccatcaaagttacatagaccctgttacccactccatatataacccaaaagtatgcatgcctccatttcctaataagaaacaaagaaccac |
19456738 |
T |
|
| Q |
235 |
aaatccctcaga |
246 |
Q |
| |
|
||||||| |||| |
|
|
| T |
19456737 |
aaatcccccaga |
19456726 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #26
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 135 - 241
Target Start/End: Complemental strand, 19438487 - 19438381
Alignment:
| Q |
135 |
tttaactttacaatcgaagtaacatagagcttgtcacccactctatcaataaaccgatagtatgcatgcctccattttgtaatgagaaacaaagaaccga |
234 |
Q |
| |
|
||||||||||| ||| |||||||||| || | ||||| |||| |||||| |||||| |||| |||||||||||||| |||| ||||||| |||||| |
|
|
| T |
19438487 |
tttaactttactatcaaagtaacataaagatagtcacacactgtatcaactaaccgaaagtacgcatgcctccatttcctaataagaaacatagaaccac |
19438388 |
T |
|
| Q |
235 |
aaatccc |
241 |
Q |
| |
|
||||||| |
|
|
| T |
19438387 |
aaatccc |
19438381 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #27
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 138 - 246
Target Start/End: Complemental strand, 18109968 - 18109860
Alignment:
| Q |
138 |
aactttacaatcgaagtaacatagagcttgtcacccactctatcaataaaccgatagtatgcatgcctccattttgtaatgagaaacaaagaaccgaaaa |
237 |
Q |
| |
|
|||||||| ||| | || ||||||||| ||| |||||||| || ||||| ||| ||||||||||||||||||| | || | |||||||||||| ||| |
|
|
| T |
18109968 |
aactttaccatcaatgttacatagagcctgttacccactccatatataaaacgaaagtatgcatgcctccatttcctgataacaaacaaagaaccacaaa |
18109869 |
T |
|
| Q |
238 |
tccctcaga |
246 |
Q |
| |
|
|||| |||| |
|
|
| T |
18109868 |
tcccccaga |
18109860 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #28
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 137 - 228
Target Start/End: Original strand, 24493241 - 24493332
Alignment:
| Q |
137 |
taactttacaatcgaagtaacatagagcttgtcacccactctatcaataaaccgatagtatgcatgcctccattttgtaatgagaaacaaag |
228 |
Q |
| |
|
|||||| || ||| |||| ||||||| | |||||||||||| ||| |||||||| ||||| || ||||||||||| |||| ||||| |||| |
|
|
| T |
24493241 |
taacttcaccatcaaagttacatagatcctgtcacccactccatcgataaaccggtagtacgcgtgcctccatttcctaataagaaataaag |
24493332 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 66; Significance: 3e-29; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 133 - 246
Target Start/End: Complemental strand, 15537076 - 15536963
Alignment:
| Q |
133 |
tgtttaactttacaatcgaagtaacatagagcttgtcacccactctatcaataaaccgatagtatgcatgcctccattttgtaatgagaaacaaagaacc |
232 |
Q |
| |
|
||||||||||||| ||| |||||||||||| ||||||||| ||| ||||| |||||||| |||||||||||||||||||| |||| |||||||||||||| |
|
|
| T |
15537076 |
tgtttaactttacgatcaaagtaacatagatcttgtcacctactttatcagtaaaccgaaagtatgcatgcctccattttctaataagaaacaaagaacc |
15536977 |
T |
|
| Q |
233 |
gaaaatccctcaga |
246 |
Q |
| |
|
||||||| |||| |
|
|
| T |
15536976 |
acaaatcccccaga |
15536963 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 128 - 241
Target Start/End: Original strand, 2709025 - 2709138
Alignment:
| Q |
128 |
aaagttgtttaactttacaatcgaagtaacatagagcttgtcacccactctatcaataaaccgatagtatgcatgcctccattttgtaatgagaaacaaa |
227 |
Q |
| |
|
||||||||||||||||| ||| |||| ||||||||||||||||| |||| |||||||||||||||||||| | ||||||||| |||| ||||||||| |
|
|
| T |
2709025 |
aaagttgtttaactttatcatcaaagttacatagagcttgtcacctactccatcaataaaccgatagtatgtgttcctccatttcctaataagaaacaaa |
2709124 |
T |
|
| Q |
228 |
gaaccgaaaatccc |
241 |
Q |
| |
|
| ||| ||||||| |
|
|
| T |
2709125 |
ggaccacaaatccc |
2709138 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 58; Significance: 2e-24; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 135 - 232
Target Start/End: Original strand, 13665407 - 13665504
Alignment:
| Q |
135 |
tttaactttacaatcgaagtaacatagagcttgtcacccactctatcaataaaccgatagtatgcatgcctccattttgtaatgagaaacaaagaacc |
232 |
Q |
| |
|
||||||||||| ||| |||||| |||||| ||||| ||||||||||||| ||||||| || ||||||||||||||||| |||| |||||||||||||| |
|
|
| T |
13665407 |
tttaactttaccatcaaagtaatatagagattgtcgcccactctatcaaaaaaccgaaagcatgcatgcctccattttctaataagaaacaaagaacc |
13665504 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 54; Significance: 4e-22; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 136 - 241
Target Start/End: Complemental strand, 8461106 - 8461001
Alignment:
| Q |
136 |
ttaactttacaatcgaagtaacatagagcttgtcacccactctatcaataaaccgatagtatgcatgcctccattttgtaatgagaaacaaagaaccgaa |
235 |
Q |
| |
|
|||||||||| ||| || | |||||||||||||||||| || ||||||||| ||||||||||||||||||||||| |||| |||||||||||||| | |
|
|
| T |
8461106 |
ttaactttaccatcaaaattccatagagcttgtcacccattccatcaataaatcgatagtatgcatgcctccatttcctaataagaaacaaagaaccaca |
8461007 |
T |
|
| Q |
236 |
aatccc |
241 |
Q |
| |
|
|||||| |
|
|
| T |
8461006 |
aatccc |
8461001 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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