View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15982_low_48 (Length: 254)

Name: NF15982_low_48
Description: NF15982
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15982_low_48
NF15982_low_48
[»] chr8 (2 HSPs)
chr8 (20-254)||(9289388-9289622)
chr8 (20-254)||(8211148-8211382)
[»] chr4 (2 HSPs)
chr4 (20-254)||(7055565-7055799)
chr4 (20-254)||(14463386-14463620)
[»] chr3 (4 HSPs)
chr3 (20-254)||(51423576-51423809)
chr3 (20-254)||(11685194-11685410)
chr3 (20-68)||(32060229-32060277)
chr3 (20-70)||(12840780-12840830)
[»] chr2 (1 HSPs)
chr2 (20-254)||(38979329-38979566)
[»] scaffold0442 (1 HSPs)
scaffold0442 (20-254)||(13355-13588)
[»] scaffold0167 (1 HSPs)
scaffold0167 (20-174)||(20221-20373)


Alignment Details
Target: chr8 (Bit Score: 194; Significance: 1e-105; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 20 - 254
Target Start/End: Original strand, 9289388 - 9289622
Alignment:
Q  20 gtaacctattttacttcccattttaccgtaaactaaaatgtcattgttgctattaataaatcaatcccacttagaattgagtagttttatgcggttccac 119  Q
    |||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||    
T  9289388 gtaacctattttacttcccattttaccgtaaactaaaatgccattgttgctattcataaatcaatcccacttagaattgagcagttttatgcggttccac 9289487  T
Q  120 aatttttcccaagagagacaaacaattgaaggagcatcaaggttagaagtttttacaatttgtttgaannnnnnnccattaattaaactctgcagaattt 219  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||       |||||||||||||||||||||||||    
T  9289488 aatttttcccaagagagacaaacaattgaaggagcatcaaggttagaagtttttataatttgtttgaatttttttccattaattaaactctgcagaattt 9289587  T
Q  220 tgaatgtatgtttcactctcaatttcaatctattt 254  Q
    ||| |||||||||||||||||||||||||||||||    
T  9289588 tgactgtatgtttcactctcaatttcaatctattt 9289622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 20 - 254
Target Start/End: Original strand, 8211148 - 8211382
Alignment:
Q  20 gtaacctattttacttcccattttaccgtaaactaaaatgtcattgttgctattaataaatcaatcccacttagaattgagtagttttatgcggttccac 119  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||     
T  8211148 gtaacctattttacttcccattttaccgtaaactaaaatgtcattgttgctattaataaatcaatcccacttagaattgagcagttttatgtggttccat 8211247  T
Q  120 aatttttcccaagagagacaaacaattgaaggagcatcaaggttagaagtttttacaatttgtttgaannnnnnnccattaattaaactctgcagaattt 219  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||       |||||||||||||||||||||||||    
T  8211248 aatttttcccaagagagacaaacaattgaaggagcatcgaggttagaagtttttataatttgtttgaatttttttccattaattaaactctgcagaattt 8211347  T
Q  220 tgaatgtatgtttcactctcaatttcaatctattt 254  Q
    ||| |||||||||||||||||||||||||||||||    
T  8211348 tgactgtatgtttcactctcaatttcaatctattt 8211382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 178; Significance: 4e-96; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 178; E-Value: 4e-96
Query Start/End: Original strand, 20 - 254
Target Start/End: Complemental strand, 7055799 - 7055565
Alignment:
Q  20 gtaacctattttacttcccattttaccgtaaactaaaatgtcattgttgctattaataaatcaatcccacttagaattgagtagttttatgcggttccac 119  Q
    |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||    
T  7055799 gtaacctattttacttcccattttaccgtaaactaaaatgccattgttgctattaataaatcaaacccacttagaattgagcagttttatgcggttccac 7055700  T
Q  120 aatttttcccaagagagacaaacaattgaaggagcatcaaggttagaagtttttacaatttgtttgaannnnnnnccattaattaaactctgcagaattt 219  Q
    ||||||||| |||||||||||||||||||||||| ||  |||||||||||||||| ||||||||||||       |||||||||||||||||||||||||    
T  7055699 aatttttcctaagagagacaaacaattgaaggagaatagaggttagaagtttttataatttgtttgaatttttttccattaattaaactctgcagaattt 7055600  T
Q  220 tgaatgtatgtttcactctcaatttcaatctattt 254  Q
    ||| |||||||||||||||||||||||||||||||    
T  7055599 tgagtgtatgtttcactctcaatttcaatctattt 7055565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 170; E-Value: 2e-91
Query Start/End: Original strand, 20 - 254
Target Start/End: Complemental strand, 14463620 - 14463386
Alignment:
Q  20 gtaacctattttacttcccattttaccgtaaactaaaatgtcattgttgctattaataaatcaatcccacttagaattgagtagttttatgcggttccac 119  Q
    |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||    
T  14463620 gtaacctattttacttcccattttaccgtaaactaaaatgccattgttgctattaataaatcaaacccacttagaattgagcagttttatgcggttccac 14463521  T
Q  120 aatttttcccaagagagacaaacaattgaaggagcatcaaggttagaagtttttacaatttgtttgaannnnnnnccattaattaaactctgcagaattt 219  Q
    ||||||||| |||||||||||||||||||||||| ||  || ||||||||||||| ||||||||||||       |||||||||||||| ||||||||||    
T  14463520 aatttttcctaagagagacaaacaattgaaggagaatagagattagaagtttttataatttgtttgaatttttttccattaattaaactatgcagaattt 14463421  T
Q  220 tgaatgtatgtttcactctcaatttcaatctattt 254  Q
    ||| |||||||||||||||||||||||||||||||    
T  14463420 tgagtgtatgtttcactctcaatttcaatctattt 14463386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 169; Significance: 1e-90; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 169; E-Value: 1e-90
Query Start/End: Original strand, 20 - 254
Target Start/End: Original strand, 51423576 - 51423809
Alignment:
Q  20 gtaacctattttacttcccattttaccgtaaactaaaatgtcattgttgctattaataaatcaatcccacttagaattgagtagttttatgcggttccac 119  Q
    ||||||||||||||||||||||||||  ||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  51423576 gtaacctattttacttcccattttactataaactaaaatgttattgttgctattaataaatcaatcccacttagaattgagcagttttatgcggttccac 51423675  T
Q  120 aatttttcccaagagagacaaacaattgaaggagcatcaaggttagaagtttttacaatttgtttgaannnnnnnccattaattaaactctgcagaattt 219  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||       | ||||||||||||||| |||||||    
T  51423676 aatttttcccaagagagacaaacaattgaaggagcatccaggttagaagtttttataatttgtttgaa-ttttttctattaattaaactctgtagaattt 51423774  T
Q  220 tgaatgtatgtttcactctcaatttcaatctattt 254  Q
    ||| ||||||||||||||||||||||||| |||||    
T  51423775 tgactgtatgtttcactctcaatttcaatttattt 51423809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 131; E-Value: 5e-68
Query Start/End: Original strand, 20 - 254
Target Start/End: Original strand, 11685194 - 11685410
Alignment:
Q  20 gtaacctattttacttcccattttaccgtaaactaaaatgtcattgttgctattaataaatcaatcccacttagaattgagtagttttatgcggttccac 119  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||                  ||||||||||||    
T  11685194 gtaacctattttacttcccattttaccgtaaactaaaatgccattgttgctattaataaatcaatcccac------------------atgcggttccac 11685275  T
Q  120 aatttttcccaagagagacaaacaattgaaggagcatcaaggttagaagtttttacaatttgtttgaannnnnnnccattaattaaactctgcagaattt 219  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||       |||||||||| ||||||||||||||    
T  11685276 aatttttcccaagagagacaaacaattgaaggagcatcgaggttagaagtttttataatttgtttgaatttttttccattaattagactctgcagaattt 11685375  T
Q  220 tgaatgtatgtttcactctcaatttcaatctattt 254  Q
    ||| | |||||||||||||||||||||||||||||    
T  11685376 tgactctatgtttcactctcaatttcaatctattt 11685410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 20 - 68
Target Start/End: Original strand, 32060229 - 32060277
Alignment:
Q  20 gtaacctattttacttcccattttaccgtaaactaaaatgtcattgttg 68  Q
    ||||||||||||||||||||||||| |||||||||||||||||||||||    
T  32060229 gtaacctattttacttcccattttatcgtaaactaaaatgtcattgttg 32060277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 20 - 70
Target Start/End: Complemental strand, 12840830 - 12840780
Alignment:
Q  20 gtaacctattttacttcccattttaccgtaaactaaaatgtcattgttgct 70  Q
    ||||||||||||||||||||||||||||||| |||||||| ||||||||||    
T  12840830 gtaacctattttacttcccattttaccgtaagctaaaatgccattgttgct 12840780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 151; Significance: 5e-80; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 151; E-Value: 5e-80
Query Start/End: Original strand, 20 - 254
Target Start/End: Original strand, 38979329 - 38979566
Alignment:
Q  20 gtaacctattttacttcccattttaccgtaaactaaaatgtcattgttgctattaataaatcaatcccacttagaattgagtagttttatgcggttccac 119  Q
    |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||    
T  38979329 gtaacctattttacttcccattttaccgtaaactaaaatgccattgttgctattaataaatcaaacccacttagaattgagcagttttatgcggttccac 38979428  T
Q  120 aatttttcccaagagagacaaacaattgaaggagcatcaaggttagaagtttttacaatttgtttga---annnnnnnccattaattaaactctgcagaa 216  Q
    | ||||||| |||||||||||||||||||||||| ||  |||||||||||||||| |||||||||||            |||||||||||||||||||||    
T  38979429 agtttttcctaagagagacaaacaattgaaggagaatagaggttagaagtttttataatttgtttgatattttttttttcattaattaaactctgcagaa 38979528  T
Q  217 ttttgaatgtatgtttcactctcaatttcaatctattt 254  Q
    |||||| ||||||||||||| |||||||||||||||||    
T  38979529 ttttgagtgtatgtttcactttcaatttcaatctattt 38979566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0442 (Bit Score: 149; Significance: 8e-79; HSPs: 1)
Name: scaffold0442
Description:

Target: scaffold0442; HSP #1
Raw Score: 149; E-Value: 8e-79
Query Start/End: Original strand, 20 - 254
Target Start/End: Complemental strand, 13588 - 13355
Alignment:
Q  20 gtaacctattttacttcccattttaccgtaaactaaaatgtcattgttgctattaataaatcaatcccacttagaattgagtagttttatgcggttccac 119  Q
    ||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||| ||||||||||| |||||||||| |||||||    
T  13588 gtaacatattttacttcccattttaccgtaaactaaaatgccattgttgctattaataaatcaaacccaattagaattgagcagttttatgcagttccac 13489  T
Q  120 aatttttcccaagagagacaaacaattgaaggagcatcaaggttagaagtttttacaatttgtttgaannnnnnnccattaattaaactctgcagaattt 219  Q
    ||||||||| ||||||||||||||||| |||||| ||  ||||||| |||||||| ||||||||| ||       |||||||||||||||||||||||||    
T  13488 aatttttcctaagagagacaaacaattcaaggagaatagaggttaggagtttttataatttgttttaa-ttttttccattaattaaactctgcagaattt 13390  T
Q  220 tgaatgtatgtttcactctcaatttcaatctattt 254  Q
    ||| |||||||||||||||||||||||||||||||    
T  13389 tgactgtatgtttcactctcaatttcaatctattt 13355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0167 (Bit Score: 112; Significance: 1e-56; HSPs: 1)
Name: scaffold0167
Description:

Target: scaffold0167; HSP #1
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 20 - 174
Target Start/End: Complemental strand, 20373 - 20221
Alignment:
Q  20 gtaacctattttacttcccattttaccgtaaactaaaatgtcattgttgctattaataaatcaatcccacttagaattgagtagttttatgcggttccac 119  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||| ||||||||||||||||||    
T  20373 gtaacctattttacttcccattttaccgtaaactaaaatgtcattgttgctattaataaatcaaatccacttagaattgagcagttttatgcggttccac 20274  T
Q  120 aatttttcccaagagagacaaacaattgaaggagcatcaaggttagaagttttta 174  Q
    ||||||||| |  ||||||||||||||||| ||| ||  ||||||||||||||||    
T  20273 aatttttccta--agagacaaacaattgaatgagaatagaggttagaagttttta 20221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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