View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15982_low_49 (Length: 251)
Name: NF15982_low_49
Description: NF15982
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15982_low_49 |
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| [»] chr4 (2 HSPs) |
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| [»] scaffold0227 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 230; Significance: 1e-127; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 10 - 251
Target Start/End: Original strand, 223768 - 224009
Alignment:
| Q |
10 |
gaagaatatggatttcccaaccttgttggacaagtggattatggagtgcattagtacggctccgacctctcatttggtaatcaatcaacatttcaagaat |
109 |
Q |
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| T |
223768 |
gaagaaaatggatttcccaaccttgttggacaagtggattatggagtgcattagtacggctccgacctctcatttggtaatcaatcaacatttcaagaat |
223867 |
T |
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| Q |
110 |
tatcttcttctctctaaaactcttgttcaatactatatttgcataacttctcctttgtatcggattctattctaaattttttaaatctcaacacttagac |
209 |
Q |
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| T |
223868 |
tatcttcttctctctaaaactcttgttcaatactatatttgcataacttctcctttgtatcggattctattctaaatttttaaaatctcaacacttagac |
223967 |
T |
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| Q |
210 |
ttgaatttatcggtttgtctctaaaatcctatttttccgtct |
251 |
Q |
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| T |
223968 |
ttgaatttatcggtttgtccctaaaatcctatttttccgtct |
224009 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 77 - 137
Target Start/End: Original strand, 37905044 - 37905104
Alignment:
| Q |
77 |
tctcatttggtaatcaatcaacatttcaagaattatcttcttctctctaaaactcttgttc |
137 |
Q |
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| T |
37905044 |
tctcatttggtaatcaatcaatattttaacaattatcttattctctctaaaactctcgttc |
37905104 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 37; Significance: 0.000000000006; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 78 - 129
Target Start/End: Original strand, 22803133 - 22803185
Alignment:
| Q |
78 |
ctcatttggtaatcaatcaac-atttcaagaattatcttcttctctctaaaac |
129 |
Q |
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| T |
22803133 |
ctcatttggtaatcaatcaaatatttcaacaattatcttcttctctctaaaac |
22803185 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 78 - 129
Target Start/End: Original strand, 22869628 - 22869680
Alignment:
| Q |
78 |
ctcatttggtaatcaatcaac-atttcaagaattatcttcttctctctaaaac |
129 |
Q |
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| T |
22869628 |
ctcatttggtaatcaatcaaatatttcaacaattatcttcttctctctaaaac |
22869680 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 35; Significance: 0.00000000009; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 78 - 128
Target Start/End: Original strand, 3666987 - 3667037
Alignment:
| Q |
78 |
ctcatttggtaatcaatcaacatttcaagaattatcttcttctctctaaaa |
128 |
Q |
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| T |
3666987 |
ctcatttgggaatcaatcaatatttcaacaattatcttctcctctctaaaa |
3667037 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 31; Significance: 0.00000002; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 107 - 141
Target Start/End: Original strand, 50751955 - 50751989
Alignment:
| Q |
107 |
aattatcttcttctctctaaaactcttgttcaata |
141 |
Q |
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| T |
50751955 |
aattatcttcttctctctaaaacccttgttcaata |
50751989 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 88 - 129
Target Start/End: Original strand, 38450418 - 38450459
Alignment:
| Q |
88 |
aatcaatcaacatttcaagaattatcttcttctctctaaaac |
129 |
Q |
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| T |
38450418 |
aatcaatcaatatttcaacaattatcttattctctctaaaac |
38450459 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 88 - 129
Target Start/End: Original strand, 38464269 - 38464310
Alignment:
| Q |
88 |
aatcaatcaacatttcaagaattatcttcttctctctaaaac |
129 |
Q |
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| T |
38464269 |
aatcaatcaatatttcaacaattatcttattctctctaaaac |
38464310 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0227 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0227
Description:
Target: scaffold0227; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 157 - 248
Target Start/End: Original strand, 1749 - 1840
Alignment:
| Q |
157 |
ttctcctttgtatcggattctattctaaattttttaaatctcaacactt-agacttgaatttatcggtttgtctctaaaatcctatttttccg |
248 |
Q |
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| T |
1749 |
ttctcctttgtatcggattctattccaaatcattagaatccctacacttgagacttgga-ttatcggttcatctctaaaatcatattcttccg |
1840 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 78 - 129
Target Start/End: Original strand, 20868217 - 20868269
Alignment:
| Q |
78 |
ctcatttggtaatcaatcaa-catttcaagaattatcttcttctctctaaaac |
129 |
Q |
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| T |
20868217 |
ctcatttgacaatcaatcaaacattttaacaattatcttcttctctctaaaac |
20868269 |
T |
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