View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15982_low_55 (Length: 240)

Name: NF15982_low_55
Description: NF15982
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15982_low_55
NF15982_low_55
[»] chr5 (10 HSPs)
chr5 (13-222)||(15428408-15428617)
chr5 (16-222)||(15084031-15084237)
chr5 (83-222)||(15336712-15336851)
chr5 (69-222)||(15332264-15332417)
chr5 (64-222)||(15358357-15358515)
chr5 (77-222)||(16415080-16415225)
chr5 (83-222)||(15348088-15348227)
chr5 (69-191)||(16397786-16397908)
chr5 (69-144)||(15452306-15452381)
chr5 (69-112)||(16404459-16404502)
[»] chr3 (1 HSPs)
chr3 (27-222)||(8188188-8188383)
[»] chr4 (1 HSPs)
chr4 (13-57)||(18688715-18688759)


Alignment Details
Target: chr5 (Bit Score: 198; Significance: 1e-108; HSPs: 10)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 13 - 222
Target Start/End: Original strand, 15428408 - 15428617
Alignment:
Q  13 caaaggatccaagggtggactacctcataagatacatagctcttgtttatgttctcttcatccaaagcaagttgctttccgttacaaaattgctaagaaa 112  Q
    ||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15428408 caaaggatccaagggtggactacgtcataagctacatagctcttgtttatgttctcttcatccaaagcaagttgctttccgttacaaaattgctaagaaa 15428507  T
Q  113 atgaagaacatacgagagaggttagatgaaatagctgcagaaagaatcaaatttcatttgaccgagatagtcagagagaagagaagcggagtccctgatt 212  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||    
T  15428508 atgaagaacatacgagagaggttagatgaaatagctgcagaaagaatcaaatttcatttgaccgagatagtcagagagaagagaagcggagtccctaatt 15428607  T
Q  213 ggcgccaaac 222  Q
    ||||||||||    
T  15428608 ggcgccaaac 15428617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 16 - 222
Target Start/End: Complemental strand, 15084237 - 15084031
Alignment:
Q  16 aggatccaagggtggactacctcataagatacatagctcttgtttatgttctcttcatccaaagcaagttgctttccgttacaaaattgctaagaaaatg 115  Q
    |||||||| ||||||||||| |  |||| |||| ||||||||  |||  |||||||||||||| ||||||||||| ||||||||||||||||||||||||    
T  15084237 aggatccatgggtggactacatggtaagctacaaagctcttgcgtatcatctcttcatccaaaacaagttgcttttcgttacaaaattgctaagaaaatg 15084138  T
Q  116 aagaacatacgagagaggttagatgaaatagctgcagaaagaatcaaatttcatttgaccgagatagtcagagagaagagaagcggagtccctgattggc 215  Q
    |||| ||||||||||||||| ||||||||||||| |||||  | ||| ||||||||||| |||||||||||||| |||||||||||||||| ||| |||     
T  15084137 aagagcatacgagagaggttggatgaaatagctgaagaaaagaccaagtttcatttgactgagatagtcagagaaaagagaagcggagtccttgactggt 15084038  T
Q  216 gccaaac 222  Q
    |||||||    
T  15084037 gccaaac 15084031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 83 - 222
Target Start/End: Complemental strand, 15336851 - 15336712
Alignment:
Q  83 gttgctttccgttacaaaattgctaagaaaatgaagaacatacgagagaggttagatgaaatagctgcagaaagaatcaaatttcatttgaccgagatag 182  Q
    ||||||||||||||||||||||||||||||||||||| |||| | ||||| || ||||| ||||| | |||||||| ||| ||||||||||  |||||||    
T  15336851 gttgctttccgttacaaaattgctaagaaaatgaagagcataagggagagattggatgagatagcagaagaaagaagcaagtttcatttgattgagatag 15336752  T
Q  183 tcagagagaagagaagcggagtccctgattggcgccaaac 222  Q
    |||||||||||||||||||||||| ||| ||||| |||||    
T  15336751 tcagagagaagagaagcggagtccttgactggcggcaaac 15336712  T

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Target: chr5; HSP #4
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 69 - 222
Target Start/End: Complemental strand, 15332417 - 15332264
Alignment:
Q  69 ttcatccaaagcaagttgctttccgttacaaaattgctaagaaaatgaagaacatacgagagaggttagatgaaatagctgcagaaagaatcaaatttca 168  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||| | |||||||||||| ||| |||||||||||| |||||| |  || |||||    
T  15332417 ttcatccaaagcatgttgctttccgttacaaaattgctaagaaaatgaaaagcatacgagagagattaaatgaaatagctgaagaaaggagtaagtttca 15332318  T
Q  169 tttgaccgagatagtcagagagaagagaagcggagtccctgattggcgccaaac 222  Q
    |||||  || || || | ||||||||||   ||||||  ||| |||||||||||    
T  15332317 tttgattgaaatggttaaagagaagagagatggagtcattgactggcgccaaac 15332264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 64 - 222
Target Start/End: Complemental strand, 15358515 - 15358357
Alignment:
Q  64 ttctcttcatccaaagcaagttgctttccgttacaaaattgctaagaaaatgaagaacatacgagagaggttagatgaaatagctgcagaaagaatcaaa 163  Q
    |||| ||||||| ||||| |||||||||||||||||| |||||||||||||||| |  ||| ||||||| || ||||||||||||| |||||| |  ||     
T  15358515 ttcttttcatcctaagcatgttgctttccgttacaaacttgctaagaaaatgaaaagaataagagagagattggatgaaatagctgaagaaaggagtaag 15358416  T
Q  164 tttcatttgaccgagatagtcagagagaagagaagcggagtccctgattggcgccaaac 222  Q
    ||||||||||| |||||||| |||||||  |||||||| || | ||| ||||| |||||    
T  15358415 tttcatttgactgagatagtgagagagagaagaagcggggttcttgactggcgacaaac 15358357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 77 - 222
Target Start/End: Complemental strand, 16415225 - 16415080
Alignment:
Q  77 aagcaagttgctttccgttacaaaattgctaagaaaatgaagaacatacgagagaggttagatgaaatagctgcagaaagaatcaaatttcatttgaccg 176  Q
    ||||| || ||||||||||||||||||||||||||||||||||| ||| | || || ||  |||||||||| | |||||| |  |  ||||||||||| |    
T  16415225 aagcatgtcgctttccgttacaaaattgctaagaaaatgaagaagataagggacagattgaatgaaatagccgaagaaaggagtatgtttcatttgactg 16415126  T
Q  177 agatagtcagagagaagagaagcggagtccctgattggcgccaaac 222  Q
    ||||||||| |||||||||||| ||||||| ||| |||||||||||    
T  16415125 agatagtcaaagagaagagaagtggagtccttgactggcgccaaac 16415080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 83 - 222
Target Start/End: Complemental strand, 15348227 - 15348088
Alignment:
Q  83 gttgctttccgttacaaaattgctaagaaaatgaagaacatacgagagaggttagatgaaatagctgcagaaagaatcaaatttcatttgaccgagatag 182  Q
    |||||||||||||||||||||||||||||||| ||||  ||| | ||||| || |||| |||||||| |||||| |  || ||||||||||| |||||||    
T  15348227 gttgctttccgttacaaaattgctaagaaaattaagaggataagggagagattggatggaatagctgaagaaaggagtaagtttcatttgactgagatag 15348128  T
Q  183 tcagagagaagagaagcggagtccctgattggcgccaaac 222  Q
    ||||||| | |||| | | ||||| ||| ||||| |||||    
T  15348127 tcagagaaaggagatgtgaagtccttgactggcgacaaac 15348088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 69 - 191
Target Start/End: Complemental strand, 16397908 - 16397786
Alignment:
Q  69 ttcatccaaagcaagttgctttccgttacaaaattgctaagaaaatgaagaacatacgagagaggttagatgaaatagctgcag-aaagaatcaaatttc 167  Q
    |||||||||||||  ||||||||||||||||| ||||||||||||||||||  ||| |||   |||||||||| || ||||||| ||||||| || ||||    
T  16397908 ttcatccaaagcatattgctttccgttacaaacttgctaagaaaatgaagaggataggagtctggttagatgacattgctgcagaaaagaat-aagtttc 16397810  T
Q  168 atttgaccgagatagtcagagaga 191  Q
    |||| || ||||| || |||||||    
T  16397809 atttaactgagatcgttagagaga 16397786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 69 - 144
Target Start/End: Original strand, 15452306 - 15452381
Alignment:
Q  69 ttcatccaaagcaagttgctttccgttacaaaattgctaagaaaatgaagaacatacgagagaggttagatgaaat 144  Q
    ||||||| ||||| |||||||| ||||||||| ||||||| ||||||| ||  ||| |||||||||||||| ||||    
T  15452306 ttcatcccaagcatgttgcttttcgttacaaacttgctaaaaaaatgaggaggataagagagaggttagatcaaat 15452381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 69 - 112
Target Start/End: Complemental strand, 16404502 - 16404459
Alignment:
Q  69 ttcatccaaagcaagttgctttccgttacaaaattgctaagaaa 112  Q
    ||||||||||||| |||||||| ||||||||| |||||||||||    
T  16404502 ttcatccaaagcatgttgcttttcgttacaaacttgctaagaaa 16404459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 88; Significance: 2e-42; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 27 - 222
Target Start/End: Complemental strand, 8188383 - 8188188
Alignment:
Q  27 gtggactacctcataagatacatagctcttgtttatgttctcttcatccaaagcaagttgctttccgttacaaaattgctaagaaaatgaagaacatacg 126  Q
    |||||| ||| || ||| |||| |||||||| ||||  ||| ||||||| ||||| ||||||||||||||||| |||||||||||||||||||| |||||    
T  8188383 gtggaccaccacacaaggtacaaagctcttgcttatcctcttttcatcctaagcatgttgctttccgttacaatattgctaagaaaatgaagaagatacg 8188284  T
Q  127 agagaggttagatgaaatagctgcagaaagaatcaaatttcatttgaccgagatagtcagagagaagagaagcggagtccctgattggcgccaaac 222  Q
    | ||||||| |||||||| |||| ||||||||  || ||||||||||| |||||||| |||||||||||||| |||||   ||| |||||||||||    
T  8188283 aaagaggttggatgaaattgctgaagaaagaactaagtttcatttgactgagatagtgagagagaagagaagtggagtatttgactggcgccaaac 8188188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 13 - 57
Target Start/End: Complemental strand, 18688759 - 18688715
Alignment:
Q  13 caaaggatccaagggtggactacctcataagatacatagctcttg 57  Q
    ||||||||||||||||||||||||  ||||| |||| ||||||||    
T  18688759 caaaggatccaagggtggactacccgataaggtacaaagctcttg 18688715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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