View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15982_low_59 (Length: 237)

Name: NF15982_low_59
Description: NF15982
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15982_low_59
NF15982_low_59
[»] chr8 (5 HSPs)
chr8 (1-221)||(23853469-23853686)
chr8 (1-50)||(7126913-7126962)
chr8 (145-202)||(23851617-23851674)
chr8 (1-60)||(8451571-8451630)
chr8 (1-60)||(40589163-40589222)
[»] chr7 (6 HSPs)
chr7 (1-60)||(16098163-16098222)
chr7 (2-60)||(22288921-22288979)
chr7 (1-60)||(16731613-16731672)
chr7 (1-60)||(17709747-17709806)
chr7 (1-51)||(1581304-1581354)
chr7 (1-50)||(29201399-29201448)
[»] chr4 (9 HSPs)
chr4 (1-60)||(51259978-51260037)
chr4 (1-48)||(28538233-28538280)
chr4 (1-50)||(2064543-2064592)
chr4 (3-60)||(37246307-37246364)
chr4 (1-50)||(56065319-56065368)
chr4 (1-60)||(32577494-32577553)
chr4 (1-60)||(55734689-55734748)
chr4 (1-51)||(18442592-18442642)
chr4 (1-51)||(51735420-51735470)
[»] chr3 (4 HSPs)
chr3 (1-60)||(55199200-55199259)
chr3 (1-51)||(53496733-53496783)
chr3 (157-199)||(3157513-3157555)
chr3 (154-201)||(3139742-3139790)
[»] chr1 (3 HSPs)
chr1 (1-60)||(36733373-36733432)
chr1 (1-60)||(51112995-51113054)
chr1 (1-51)||(44526954-44527004)
[»] chr6 (3 HSPs)
chr6 (1-55)||(30802418-30802472)
chr6 (1-60)||(15606449-15606508)
chr6 (1-60)||(14679838-14679897)
[»] chr2 (5 HSPs)
chr2 (1-51)||(18345922-18345972)
chr2 (1-54)||(12131086-12131139)
chr2 (1-60)||(34696350-34696409)
chr2 (1-60)||(34718762-34718821)
chr2 (1-60)||(39826303-39826362)
[»] chr5 (4 HSPs)
chr5 (1-60)||(8387766-8387825)
chr5 (1-60)||(22767705-22767764)
chr5 (1-60)||(27533355-27533414)
chr5 (1-55)||(41941183-41941237)


Alignment Details
Target: chr8 (Bit Score: 131; Significance: 4e-68; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 131; E-Value: 4e-68
Query Start/End: Original strand, 1 - 221
Target Start/End: Complemental strand, 23853686 - 23853469
Alignment:
Q  1 cattccaaatgacatccttacgtgcagcccaaatttgacaatgaagtaaagtcacacgacgaccagtgaatagagaagcttatttaaaatgagttttaat 100  Q
    |||||||||||||||  ||||||||||||||||||||  || ||||| ||| |||| |||   | ||||| |||||||||||| ||||||||||||||||    
T  23853686 cattccaaatgacattattacgtgcagcccaaatttggtaaagaagttaagccacatgac---cggtgaacagagaagcttatataaaatgagttttaat 23853590  T
Q  101 ttaaaaataattgagtcaacgcaaatattttagtttnnnnnnnncaagaattcatgcaaatatctttatgaataagcaaagagatatctgatgcatattt 200  Q
    ||||||||||||||| |||||||||||||||||| |        ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23853589 ttaaaaataattgaggcaacgcaaatattttagtctaaaaaaaacaagaattcatgcaaatatctttatgaataagcaaagagatatctgatgcatattt 23853490  T
Q  201 tattatatgaattataattac 221  Q
    |||||||||||||||||||||    
T  23853489 tattatatgaattataattac 23853469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 50
Target Start/End: Complemental strand, 7126962 - 7126913
Alignment:
Q  1 cattccaaatgacatccttacgtgcagcccaaatttgacaatgaagtaaa 50  Q
    |||||||||||||||| |||||||||||||||||||| ||| ||||||||    
T  7126962 cattccaaatgacatcattacgtgcagcccaaatttgccaaagaagtaaa 7126913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 145 - 202
Target Start/End: Complemental strand, 23851674 - 23851617
Alignment:
Q  145 caagaattcatgcaaatatctttatgaataagcaaagagatatctgatgcatatttta 202  Q
    ||||| || |||||| ||||||| |||||||| |||||||||||||||||||||||||    
T  23851674 caagagttaatgcaattatctttttgaataaggaaagagatatctgatgcatatttta 23851617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 60
Target Start/End: Original strand, 8451571 - 8451630
Alignment:
Q  1 cattccaaatgacatccttacgtgcagcccaaatttgacaatgaagtaaagtcacacgac 60  Q
    |||||||||| ||||| |||||||||||||||||||| ||| ||||||||| ||| ||||    
T  8451571 cattccaaataacatcattacgtgcagcccaaatttgccaaagaagtaaagccacccgac 8451630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 60
Target Start/End: Original strand, 40589163 - 40589222
Alignment:
Q  1 cattccaaatgacatccttacgtgcagcccaaatttgacaatgaagtaaagtcacacgac 60  Q
    |||||||||||||||| ||||||||| |||||||||| ||| ||||||||| ||| ||||    
T  40589163 cattccaaatgacatcattacgtgcaacccaaatttgccaaagaagtaaagccacccgac 40589222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 44; Significance: 4e-16; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 1 - 60
Target Start/End: Complemental strand, 16098222 - 16098163
Alignment:
Q  1 cattccaaatgacatccttacgtgcagcccaaatttgacaatgaagtaaagtcacacgac 60  Q
    |||||||||||||||| |||||||||||||||||||| ||| ||||||||||||| ||||    
T  16098222 cattccaaatgacatcattacgtgcagcccaaatttgccaaagaagtaaagtcacccgac 16098163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 2 - 60
Target Start/End: Complemental strand, 22288979 - 22288921
Alignment:
Q  2 attccaaatgacatccttacgtgcagcccaaatttgacaatgaagtaaagtcacacgac 60  Q
    ||||||||||||||| |||||||||| ||||||||| ||| ||||||||| ||| ||||    
T  22288979 attccaaatgacatcgttacgtgcagtccaaatttgccaaagaagtaaagccacccgac 22288921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 60
Target Start/End: Complemental strand, 16731672 - 16731613
Alignment:
Q  1 cattccaaatgacatccttacgtgcagcccaaatttgacaatgaagtaaagtcacacgac 60  Q
    |||||||||||||||| |||||||||| |||||||||  || ||||||||| ||| ||||    
T  16731672 cattccaaatgacatcattacgtgcagtccaaatttgcaaaagaagtaaagccacccgac 16731613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 60
Target Start/End: Complemental strand, 17709806 - 17709747
Alignment:
Q  1 cattccaaatgacatccttacgtgcagcccaaatttgacaatgaagtaaagtcacacgac 60  Q
    |||||||||||||||| |||||||||| |||||||||  || ||||||||| ||| ||||    
T  17709806 cattccaaatgacatcattacgtgcagtccaaatttgcaaaagaagtaaagccacccgac 17709747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 51
Target Start/End: Complemental strand, 1581354 - 1581304
Alignment:
Q  1 cattccaaatgacatccttacgtgcagcccaaatttgacaatgaagtaaag 51  Q
    |||||||||||||||| || ||||||||||||||||| ||| ||| |||||    
T  1581354 cattccaaatgacatcatttcgtgcagcccaaatttgccaaagaaataaag 1581304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 50
Target Start/End: Original strand, 29201399 - 29201448
Alignment:
Q  1 cattccaaatgacatccttacgtgcagcccaaatttgacaatgaagtaaa 50  Q
    |||||||||||||||| |||||||||  ||||||||| ||| ||||||||    
T  29201399 cattccaaatgacatcattacgtgcaatccaaatttgccaaagaagtaaa 29201448  T

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Target: chr4 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 9)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 1 - 60
Target Start/End: Original strand, 51259978 - 51260037
Alignment:
Q  1 cattccaaatgacatccttacgtgcagcccaaatttgacaatgaagtaaagtcacacgac 60  Q
    |||||||||||||||| |||||||||||||||||||| ||| ||||||||| ||| ||||    
T  51259978 cattccaaatgacatctttacgtgcagcccaaatttgccaaagaagtaaagccacccgac 51260037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 48
Target Start/End: Original strand, 28538233 - 28538280
Alignment:
Q  1 cattccaaatgacatccttacgtgcagcccaaatttgacaatgaagta 48  Q
    |||||||||||||||| |||||||||||||||||||| ||| ||||||    
T  28538233 cattccaaatgacatcattacgtgcagcccaaatttgccaaagaagta 28538280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 50
Target Start/End: Complemental strand, 2064592 - 2064543
Alignment:
Q  1 cattccaaatgacatccttacgtgcagcccaaatttgacaatgaagtaaa 50  Q
    |||||||||||||||| |||||||||||||||||||| |||  |||||||    
T  2064592 cattccaaatgacatcattacgtgcagcccaaatttgccaaaaaagtaaa 2064543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 3 - 60
Target Start/End: Original strand, 37246307 - 37246364
Alignment:
Q  3 ttccaaatgacatccttacgtgcagcccaaatttgacaatgaagtaaagtcacacgac 60  Q
    |||||||||||||| |||| ||||||||||||||  ||| ||||||||| ||||||||    
T  37246307 ttccaaatgacatcattacatgcagcccaaattttccaaagaagtaaagccacacgac 37246364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 50
Target Start/End: Complemental strand, 56065368 - 56065319
Alignment:
Q  1 cattccaaatgacatccttacgtgcagcccaaatttgacaatgaagtaaa 50  Q
    |||||||||||||||| ||||| |||||||||||||| ||| ||||||||    
T  56065368 cattccaaatgacatcattacgggcagcccaaatttgccaaagaagtaaa 56065319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 60
Target Start/End: Original strand, 32577494 - 32577553
Alignment:
Q  1 cattccaaatgacatccttacgtgcagcccaaatttgacaatgaagtaaagtcacacgac 60  Q
    |||||||||||||||| ||||| |||||| ||||||  ||| ||||||||||||| ||||    
T  32577494 cattccaaatgacatcattacgagcagcctaaattttccaaagaagtaaagtcactcgac 32577553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 60
Target Start/End: Complemental strand, 55734748 - 55734689
Alignment:
Q  1 cattccaaatgacatccttacgtgcagcccaaatttgacaatgaagtaaagtcacacgac 60  Q
    ||||| |||||| ||| |||||||||||||||||||| ||| ||||||||| ||| ||||    
T  55734748 cattctaaatgatatcattacgtgcagcccaaatttgccaaagaagtaaagccacccgac 55734689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 51
Target Start/End: Original strand, 18442592 - 18442642
Alignment:
Q  1 cattccaaatgacatccttacgtgcagcccaaatttgacaatgaagtaaag 51  Q
    |||||||||||||||| ||||||| |||||||||||  ||| |||||||||    
T  18442592 cattccaaatgacatcattacgtgtagcccaaattttccaaagaagtaaag 18442642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 51
Target Start/End: Original strand, 51735420 - 51735470
Alignment:
Q  1 cattccaaatgacatccttacgtgcagcccaaatttgacaatgaagtaaag 51  Q
    |||||||||||||||| ||| ||||||| |||||||| ||| |||||||||    
T  51735420 cattccaaatgacatcattatgtgcagctcaaatttgtcaaagaagtaaag 51735470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 1 - 60
Target Start/End: Complemental strand, 55199259 - 55199200
Alignment:
Q  1 cattccaaatgacatccttacgtgcagcccaaatttgacaatgaagtaaagtcacacgac 60  Q
    |||||||||||||||| |||||||||||||||||||| ||| ||||||||| ||| ||||    
T  55199259 cattccaaatgacatcattacgtgcagcccaaatttgtcaaagaagtaaagccacccgac 55199200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 1 - 51
Target Start/End: Complemental strand, 53496783 - 53496733
Alignment:
Q  1 cattccaaatgacatccttacgtgcagcccaaatttgacaatgaagtaaag 51  Q
    |||||||||||||||| |||||||||||||||||||| ||| |||||||||    
T  53496783 cattccaaatgacatcattacgtgcagcccaaatttgccaaagaagtaaag 53496733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 157 - 199
Target Start/End: Original strand, 3157513 - 3157555
Alignment:
Q  157 caaatatctttatgaataagcaaagagatatctgatgcatatt 199  Q
    |||||||||||||||||||| ||||| ||||||||||||||||    
T  3157513 caaatatctttatgaataaggaaagaaatatctgatgcatatt 3157555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 154 - 201
Target Start/End: Original strand, 3139742 - 3139790
Alignment:
Q  154 atgcaaatatctttatgaataa-gcaaagagatatctgatgcatatttt 201  Q
    |||||||||||||||||||||| | ||| |||||| |||||||||||||    
T  3139742 atgcaaatatctttatgaataaggaaaaaagatatatgatgcatatttt 3139790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 1 - 60
Target Start/End: Complemental strand, 36733432 - 36733373
Alignment:
Q  1 cattccaaatgacatccttacgtgcagcccaaatttgacaatgaagtaaagtcacacgac 60  Q
    |||||||||||||||| |||||||||||||||||||| ||| ||||||||| ||| ||||    
T  36733432 cattccaaatgacatcattacgtgcagcccaaatttgccaaagaagtaaagccacccgac 36733373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 60
Target Start/End: Complemental strand, 51113054 - 51112995
Alignment:
Q  1 cattccaaatgacatccttacgtgcagcccaaatttgacaatgaagtaaagtcacacgac 60  Q
    |||| ||||||||||| ||||||||| |||||||||| ||| ||||||||| ||| ||||    
T  51113054 catttcaaatgacatcattacgtgcaacccaaatttgccaaagaagtaaagccacccgac 51112995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 51
Target Start/End: Complemental strand, 44527004 - 44526954
Alignment:
Q  1 cattccaaatgacatccttacgtgcagcccaaatttgacaatgaagtaaag 51  Q
    |||||||||||||||| |||||||||| ||||||||| ||| ||| |||||    
T  44527004 cattccaaatgacatcattacgtgcagtccaaatttgccaaagaaataaag 44526954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 1 - 55
Target Start/End: Original strand, 30802418 - 30802472
Alignment:
Q  1 cattccaaatgacatccttacgtgcagcccaaatttgacaatgaagtaaagtcac 55  Q
    |||||||||||||||| ||||||||| |||||||||| ||| |||||||||||||    
T  30802418 cattccaaatgacatcattacgtgcaacccaaatttgccaaagaagtaaagtcac 30802472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 60
Target Start/End: Original strand, 15606449 - 15606508
Alignment:
Q  1 cattccaaatgacatccttacgtgcagcccaaatttgacaatgaagtaaagtcacacgac 60  Q
    |||||||||| ||||| |||||||||||||||||||| ||| ||||||||| ||| ||||    
T  15606449 cattccaaataacatcattacgtgcagcccaaatttgccaaagaagtaaagccacccgac 15606508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 60
Target Start/End: Complemental strand, 14679897 - 14679838
Alignment:
Q  1 cattccaaatgacatccttacgtgcagcccaaatttgacaatgaagtaaagtcacacgac 60  Q
    |||||||||||||||| |||||||||| |||||||||  || ||||||||| ||| ||||    
T  14679897 cattccaaatgacatcattacgtgcaggccaaatttgtaaaagaagtaaagccacccgac 14679838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 1 - 51
Target Start/End: Original strand, 18345922 - 18345972
Alignment:
Q  1 cattccaaatgacatccttacgtgcagcccaaatttgacaatgaagtaaag 51  Q
    |||||||||||||||| |||||||||||||||||||| ||| |||||||||    
T  18345922 cattccaaatgacatcattacgtgcagcccaaatttgccaaagaagtaaag 18345972  T

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Target: chr2; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 54
Target Start/End: Original strand, 12131086 - 12131139
Alignment:
Q  1 cattccaaatgacatccttacgtgcagcccaaatttgacaatgaagtaaagtca 54  Q
    |||| ||||||||||| |||||||||||||||||||| ||| ||||||||||||    
T  12131086 catttcaaatgacatcattacgtgcagcccaaatttgccaaagaagtaaagtca 12131139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 60
Target Start/End: Original strand, 34696350 - 34696409
Alignment:
Q  1 cattccaaatgacatccttacgtgcagcccaaatttgacaatgaagtaaagtcacacgac 60  Q
    |||||||||||||||| |||| ||||||||||||||| ||| ||||||||| ||| ||||    
T  34696350 cattccaaatgacatcattacttgcagcccaaatttgccaaagaagtaaagccacccgac 34696409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 60
Target Start/End: Original strand, 34718762 - 34718821
Alignment:
Q  1 cattccaaatgacatccttacgtgcagcccaaatttgacaatgaagtaaagtcacacgac 60  Q
    |||||||||||||||| |||| ||||||||||||||| ||| ||||||||| ||| ||||    
T  34718762 cattccaaatgacatcattacttgcagcccaaatttgccaaagaagtaaagccacccgac 34718821  T

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Target: chr2; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 60
Target Start/End: Original strand, 39826303 - 39826362
Alignment:
Q  1 cattccaaatgacatccttacgtgcagcccaaatttgacaatgaagtaaagtcacacgac 60  Q
    |||||||||||||||| ||||| |||||||||||||| ||| ||||||||| ||| ||||    
T  39826303 cattccaaatgacatcattacgagcagcccaaatttgccaaagaagtaaagccactcgac 39826362  T

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Target: chr5 (Bit Score: 36; Significance: 0.00000000002; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 60
Target Start/End: Complemental strand, 8387825 - 8387766
Alignment:
Q  1 cattccaaatgacatccttacgtgcagcccaaatttgacaatgaagtaaagtcacacgac 60  Q
    |||||||||||||||| |||||||||||||||||||  ||| ||||||||| ||| ||||    
T  8387825 cattccaaatgacatcattacgtgcagcccaaattttccaaagaagtaaagccacccgac 8387766  T

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Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 60
Target Start/End: Original strand, 22767705 - 22767764
Alignment:
Q  1 cattccaaatgacatccttacgtgcagcccaaatttgacaatgaagtaaagtcacacgac 60  Q
    |||||||||||||||| ||||| |||||||||||||| ||| ||||||||| ||| ||||    
T  22767705 cattccaaatgacatcattacgagcagcccaaatttgccaaagaagtaaagccactcgac 22767764  T

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Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 60
Target Start/End: Original strand, 27533355 - 27533414
Alignment:
Q  1 cattccaaatgacatccttacgtgcagcccaaatttgacaatgaagtaaagtcacacgac 60  Q
    |||||||||| ||||  |||| ||||||||||||||| ||| ||||||||||||| ||||    
T  27533355 cattccaaataacataattacatgcagcccaaatttgccaaagaagtaaagtcacccgac 27533414  T

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Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 55
Target Start/End: Original strand, 41941183 - 41941237
Alignment:
Q  1 cattccaaatgacatccttacgtgcagcccaaatttgacaatgaagtaaagtcac 55  Q
    |||||||||||||||| ||||||| ||||||||| || ||| |||||||| ||||    
T  41941183 cattccaaatgacatcattacgtgtagcccaaatatgtcaaagaagtaaattcac 41941237  T

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