View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15982_low_63 (Length: 228)
Name: NF15982_low_63
Description: NF15982
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15982_low_63 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 110; Significance: 1e-55; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 110; E-Value: 1e-55
Query Start/End: Original strand, 1 - 213
Target Start/End: Complemental strand, 2905308 - 2905096
Alignment:
| Q |
1 |
gctcactcgcaaatatcaatacttatcctcaaatgtttttattagagtttctgggaagtaaaaattacaataaacagtgattctttcgttcannnnnnnn |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
2905308 |
gctcactcgcaaatatcaatacttatcctcaaatgtttttattagagtttctgggaagtaaaaattacaataaaaagtgattctttcgttcattttaagc |
2905209 |
T |
|
| Q |
101 |
nnnnnnnnnnnnnnnnngcaattatctattatcctcaactaaatgtgaaaaaattatctttaaatttgtttatgcnnnnnnnncagattcattggttaaa |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
2905208 |
ttttttactgattttttgcaattatctattatcctcaactaaatgtgaaaaaattatctttaaatttgtttatgcaaaaaaaacagattcattggttaaa |
2905109 |
T |
|
| Q |
201 |
ttatgatcctttg |
213 |
Q |
| |
|
||||||||||||| |
|
|
| T |
2905108 |
ttatgatcctttg |
2905096 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 101; E-Value: 3e-50
Query Start/End: Original strand, 1 - 213
Target Start/End: Complemental strand, 2853278 - 2853064
Alignment:
| Q |
1 |
gctcactcgcaaatatcaatacttatcctcaaatgtttttattagagtttctgggaagtaaaaattacaataaacagtgattctttcgttcannnnnnnn |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
2853278 |
gctcactcgcaaatatcaatacttatcctcaaatgtttttattagagtttctgggaagtaaaaattacaataaaaagtgattctttcgttcattttaagc |
2853179 |
T |
|
| Q |
101 |
nnnnnnnnnnnnnnnnngcaattatctattatcctcaactaaatgtgaaaaaattatctttaaatttgtttatgc--nnnnnnnncagattcattggtta |
198 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
2853178 |
ttttttactgattttttgcaattatctattatcctcaactaaatgtgaaaaaattatctttaaatttgtttatgcaaaaaaaaaacagattcattggtta |
2853079 |
T |
|
| Q |
199 |
aattatgatcctttg |
213 |
Q |
| |
|
||||||||||||||| |
|
|
| T |
2853078 |
aattatgatcctttg |
2853064 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University