View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15982_low_8 (Length: 462)
Name: NF15982_low_8
Description: NF15982
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15982_low_8 |
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| [»] scaffold0076 (3 HSPs) |
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Alignment Details
Target: scaffold0076 (Bit Score: 223; Significance: 1e-122; HSPs: 3)
Name: scaffold0076
Description:
Target: scaffold0076; HSP #1
Raw Score: 223; E-Value: 1e-122
Query Start/End: Original strand, 19 - 257
Target Start/End: Complemental strand, 9386 - 9148
Alignment:
| Q |
19 |
taacaacttttgcacccctgattctattaagagacctgctgctacttgttctgaaatcaattaattggccatattttacattttaagttacttgttcgat |
118 |
Q |
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|||||||||||||||||||||||||| ||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9386 |
taacaacttttgcacccctgattctagtaaaagacctgctgctacttgttctaaaatcaattaattggccatattttacattttaagttacttgttcgat |
9287 |
T |
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| Q |
119 |
ttagacatgtgaacgaaacaattacttaaacacacatttaggcattgaagaatgcaaaaggagttgagacaatttcaaattctaaatctatcaaaccagt |
218 |
Q |
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| T |
9286 |
ttagacatgtgaacgaaacaattacttaaacacacatttaggcattgaagaatgcaaaaggagttgagacaatttcaaattctaaatcaatcaaaccagt |
9187 |
T |
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| Q |
219 |
actatagtttttataatcttgctagcaagtcatggcata |
257 |
Q |
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||||||||||||||||||||||||||||||||||||||| |
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| T |
9186 |
actatagtttttataatcttgctagcaagtcatggcata |
9148 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0076; HSP #2
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 363 - 444
Target Start/End: Complemental strand, 9014 - 8933
Alignment:
| Q |
363 |
atgttgtcattggataactaacctataaatgttaaaaggaagtatccattgttgagaatgtcaatttctaatttctaaatat |
444 |
Q |
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||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9014 |
atgttgtcattagataactaacctataaatgttaaaaggaagtatccattgttgagaatgtcaatttctaatttctaaatat |
8933 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0076; HSP #3
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 328 - 361
Target Start/End: Complemental strand, 9077 - 9044
Alignment:
| Q |
328 |
catatcaatatcaacaaatagaacaaaccacaaa |
361 |
Q |
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| T |
9077 |
catatcaatatcaacaaatagaacaaaccacaaa |
9044 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 182; Significance: 3e-98; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 182; E-Value: 3e-98
Query Start/End: Original strand, 13 - 257
Target Start/End: Original strand, 45222296 - 45222540
Alignment:
| Q |
13 |
atactgtaacaacttttgcacccctgattctattaagagacctgctgctacttgttctgaaatcaattaattggccatattttacattttaa-gttactt |
111 |
Q |
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||||| |||||||||||| ||| ||| ||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||| |||| || |
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| T |
45222296 |
atactataacaacttttggaccactggttctagtaagagacctgctgctacttgttctaaaatcaattaattggccatattttactttttaaagttaatt |
45222395 |
T |
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| Q |
112 |
gttcgatttagacatgtgaacgaaacaattacttaaacacacatttaggcattgaagaatgcaaaaggagttgagacaatttcaaattctaaatctatca |
211 |
Q |
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||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
45222396 |
gttcgatttagacatgtgattgaaacaattacttaaacacacatttaggcattgaagaatgcaaaaggagttgagacaatttcaaattctaaatcaatca |
45222495 |
T |
|
| Q |
212 |
aaccagtactatagtttttataatcttgctagcaagtcatggcata |
257 |
Q |
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||||| ||||||| |||||||||||||||||||||||||||||||| |
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| T |
45222496 |
aaccaatactata-tttttataatcttgctagcaagtcatggcata |
45222540 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 23 - 95
Target Start/End: Original strand, 45980617 - 45980689
Alignment:
| Q |
23 |
aacttttgcacccctgattctattaagagacctgctgctacttgttctgaaatcaattaattggccatatttt |
95 |
Q |
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|||||||| |||| || || || |||||||| || ||||||||||||| |||| ||||||||| | ||||||| |
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| T |
45980617 |
aacttttgtacccttggttgtagtaagagacttgttgctacttgttctaaaattaattaattgacaatatttt |
45980689 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 172; Significance: 3e-92; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 172; E-Value: 3e-92
Query Start/End: Original strand, 10 - 257
Target Start/End: Complemental strand, 4355615 - 4355363
Alignment:
| Q |
10 |
attatactgtaacaacttttgcacccctga----ttctattaagagacctgctgctacttgttctgaaatcaattaattggccatattttacattttaag |
105 |
Q |
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|||||||| || ||||||||||||||||| ||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||| | || |
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| T |
4355615 |
attatactatagcaacttttgcacccctgcctggttctagtaagagacctgctgctacttgttctaaaatcaattaattggccatattttacatataaaa |
4355516 |
T |
|
| Q |
106 |
-ttacttgttcgatttagacatgtgaacgaaacaattacttaaacacacatttaggcattgaagaatgcaaaaggagttgagacaatttcaaattctaaa |
204 |
Q |
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||||||| || |||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
4355515 |
attacttgctcaatttagacatgtgaacaaaacaattacttaaacacacatttaggcaatgaagaatgcaaaaggagttgagacaatttcaaattctaaa |
4355416 |
T |
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| Q |
205 |
tctatcaaaccagtactatagtttttataatcttgctagcaagtcatggcata |
257 |
Q |
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| T |
4355415 |
tcaatcaaaccaatactatagtttttataatcttgctagcaagtcatggcata |
4355363 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 69; E-Value: 9e-31
Query Start/End: Original strand, 48 - 252
Target Start/End: Complemental strand, 19697449 - 19697239
Alignment:
| Q |
48 |
agagacctgctgctacttgttctgaaatcaattaattggccatattttacattttaag-ttacttgttcgatttagacatgtgaacgaaacaattactta |
146 |
Q |
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||||||||| | |||||||| || |||| ||||||| |||||||||||||| | || |||| || ||||||||| |||||| ||||||||||| || |
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| T |
19697449 |
agagacctgttcctacttgtcctaaaattaattaat-ggccatattttacaaataaaaattacgaatttgatttagacgtgtgaatgaaacaattaccta |
19697351 |
T |
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| Q |
147 |
aacacacatttaggcattgaagaatgcaaaaggagttgagacaatttcaaattctaaatctatc------aaaccagtactatagtttttataatcttgc |
240 |
Q |
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|||||| |||||||||| |||||||| || | |||| ||||||||||||||||||||||| ||| ||| || ||||||||||||||||| ||||| |
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| T |
19697350 |
aacacatatttaggcatcgaagaatgtaacaagagtggagacaatttcaaattctaaatcaatcaaatcaaaatcaatactatagtttttataaccttgc |
19697251 |
T |
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| Q |
241 |
tagcaagtcatg |
252 |
Q |
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|||||||||||| |
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| T |
19697250 |
tagcaagtcatg |
19697239 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 367 - 443
Target Start/End: Complemental strand, 4355218 - 4355142
Alignment:
| Q |
367 |
tgtcattggataactaacctataaatgttaaaaggaagtatccattgttgagaatgtcaatttctaatttctaaata |
443 |
Q |
| |
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||||||| |||||||| |||||| |||| ||||||||| |||||||||||||||||||||| |||||||||||||| |
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| T |
4355218 |
tgtcattatataactaaactataactgttcaaaggaagtttccattgttgagaatgtcaattcctaatttctaaata |
4355142 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 133 - 193
Target Start/End: Original strand, 14207629 - 14207689
Alignment:
| Q |
133 |
gaaacaattacttaaacacacatttaggcattgaagaatgcaaaaggagttgagacaattt |
193 |
Q |
| |
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||||| |||||| ||||||| |||| |||||||||||||| || |||| | |||||||||| |
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|
| T |
14207629 |
gaaaccattactaaaacacatattttggcattgaagaatgtaacaggaatagagacaattt |
14207689 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 133 - 193
Target Start/End: Original strand, 31407847 - 31407907
Alignment:
| Q |
133 |
gaaacaattacttaaacacacatttaggcattgaagaatgcaaaaggagttgagacaattt |
193 |
Q |
| |
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||||| |||||| ||||||| |||| |||||||||||||| || |||| | |||||||||| |
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|
| T |
31407847 |
gaaaccattactaaaacacatattttggcattgaagaatgtaacaggaatagagacaattt |
31407907 |
T |
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