View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15983_low_1 (Length: 504)
Name: NF15983_low_1
Description: NF15983
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15983_low_1 |
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Alignment Details
Target: chr4 (Bit Score: 410; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 410; E-Value: 0
Query Start/End: Original strand, 16 - 487
Target Start/End: Original strand, 33998576 - 33999049
Alignment:
| Q |
16 |
ataaatgaggaatttacaaatctggataaagaggtaaactgtttggaaagtgnnnnnnntagtatcgtgaaaacaagagagaaatcactaataattttca |
115 |
Q |
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| T |
33998576 |
ataaatgaggaatttacaaatctggataaagaggtaaacagtttggaaagtgaaaaaaatagtatcgtgaaaacaagagagaaatcactaataattttca |
33998675 |
T |
|
| Q |
116 |
ctcacttgttgtaacagtttctcccttatttccgc--gacttattattttttggcatgtctcttttcttttatatcttgttcaacatttgatagtctatc |
213 |
Q |
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|||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
33998676 |
ctcacttgttctaacagtttctcccttatttccgcaagacttattattttttggcatgtctcttttcttttatatcttgttcaacatttgatggtctatc |
33998775 |
T |
|
| Q |
214 |
caaggtgagacttataatttacaacacttcaacaatgttttgtttggttcaaaggtttctatacttacttgcacactgtattgattgcattattgcattt |
313 |
Q |
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| T |
33998776 |
caaggtgggacttataatttacaacacttcaacaatgttttgtttggttcaaaggtttctatacttacttgcacactgtattgattgcattattgcattt |
33998875 |
T |
|
| Q |
314 |
caacctagtgagtggctggtctgcaagaggattttacctcctaaattaggacaaaaaatacctctttctatcttttccattctcatgtagggtatggtgg |
413 |
Q |
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|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||| |
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| T |
33998876 |
caacctagggagtggctggtctgcaagaggattttacctcctaaattaggacaaaaaacacctctttctatcttttccattctcatttagggtatggtgg |
33998975 |
T |
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| Q |
414 |
ctggatatatgggcgattcatgagtttattttaagtgatattataaatattttatacaacatgtggatccatag |
487 |
Q |
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||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
33998976 |
ctggatatatgggcgattcatgagtttattttaagcgatattataaatattttatacaacatgtggatccatag |
33999049 |
T |
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