View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15983_low_3 (Length: 344)
Name: NF15983_low_3
Description: NF15983
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15983_low_3 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 127; Significance: 2e-65; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 127; E-Value: 2e-65
Query Start/End: Original strand, 26 - 174
Target Start/End: Complemental strand, 45300557 - 45300407
Alignment:
| Q |
26 |
ctctagatgttctcaaaattaaggagtccataaacgaaaatgttgtggttcaaatcacaacggtgtgatcaatgcc-tttatagggtcttgagctctaga |
124 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||| |
|
|
| T |
45300557 |
ctctagatgttctcaaaattaaggagtccataaaagaaaatgttgtggttcaaatcacaacggtgtgatcaatgccttttacagggtcttgagctctaga |
45300458 |
T |
|
| Q |
125 |
tgcttgaaagatgtttaattagttgtgag-aaaggaactaggggtgtgact |
174 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
45300457 |
tgcttgaaagatgtttaattagttgtgagaaaaggaactaggggtgtgact |
45300407 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 101; E-Value: 5e-50
Query Start/End: Original strand, 217 - 317
Target Start/End: Complemental strand, 45300407 - 45300307
Alignment:
| Q |
217 |
tttgtcaagaaatctgtaattccaatcatcaacatttctatacttgagagcaactgttcccgaactaatactataattacactaataacatgattcatac |
316 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45300407 |
tttgtcaagaaatctgtaattccaatcatcaacatttctatacttgagagcaactgttcccgaactaatactataattacactaataacatgattcatac |
45300308 |
T |
|
| Q |
317 |
a |
317 |
Q |
| |
|
| |
|
|
| T |
45300307 |
a |
45300307 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University