View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15983_low_4 (Length: 333)
Name: NF15983_low_4
Description: NF15983
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15983_low_4 |
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Alignment Details
Target: chr7 (Bit Score: 260; Significance: 1e-145; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 260; E-Value: 1e-145
Query Start/End: Original strand, 18 - 297
Target Start/End: Complemental strand, 34067641 - 34067362
Alignment:
| Q |
18 |
gttctaataataactatgtttggaatatcgtaagacttgagttttaagtgcattcctgattggtttacaaaaattattttactattttgatcttgagtga |
117 |
Q |
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| T |
34067641 |
gttctgataataactatgtttggaatatcgtaagacttgagttttaagtgcattcctgattagtttacaaaaattattttactattttgatcttgagtga |
34067542 |
T |
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| Q |
118 |
caaaaatattaccttgttttcatttcattttgtatttccaaaggtttgtatataacaaaaacaagattcttaaggaaaagcgtattctacttttccccat |
217 |
Q |
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| T |
34067541 |
caaaaatattaccttgttttcatttcattttgtatttccaaaggtttgtatataacaaaaacaagattcttaaggaaaagcgtattctacttttccccat |
34067442 |
T |
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| Q |
218 |
aagaaggaaacagagaatatgggggctttctgaagaggttggggttttctcctttgtgcctctagttttctttcatttta |
297 |
Q |
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| T |
34067441 |
aagaaggaaacagagaatatgggggctttctgacgaggttggggtgttctcctttgtgcctctagttttcttacatttta |
34067362 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 288 - 333
Target Start/End: Complemental strand, 34067095 - 34067050
Alignment:
| Q |
288 |
tttcattttatgtacttacttgcatctgaaagtatgagcttatttt |
333 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34067095 |
tttcattttatgtacttacttgcatctgaaagtatgagcttatttt |
34067050 |
T |
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