View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15983_low_5 (Length: 319)
Name: NF15983_low_5
Description: NF15983
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15983_low_5 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 221; Significance: 1e-121; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 221; E-Value: 1e-121
Query Start/End: Original strand, 58 - 318
Target Start/End: Complemental strand, 23576500 - 23576240
Alignment:
| Q |
58 |
ttttaacaaaaactacactggttagccgtgattctgtaattctcacaaacactacaaacaatgcactaggagaatatgatcgagtaaaggctcttacgct |
157 |
Q |
| |
|
|||||||||||| |||| |||||||||| |||||||||||||||| ||||| | |||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
23576500 |
ttttaacaaaaattacagtggttagccgcgattctgtaattctcataaacattccaaacaatgcactaggagaatatgatcgagtaaaggctcttacgct |
23576401 |
T |
|
| Q |
158 |
gtagtctcttggccaccgccttgggaactggtgctgtagaagattccggcaggcttccctgcaagctgttgtgttttccatagaccaccagttgcatcta |
257 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| |||||||| || ||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
23576400 |
gtagtctcttggccaccgccttgggaactggtgctgtagaagattccagcaggcttaccggcaagctgttgtgttttccatagtccaccagttgcatcta |
23576301 |
T |
|
| Q |
258 |
gaaaggctttaaactgagcagccatcattccaaatcttgttggaaatccaaagacaaaacc |
318 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
23576300 |
gaaaggctttaaactgagcagccatcattccaaatcttgttggaaatccaaagacaaaacc |
23576240 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 161; E-Value: 7e-86
Query Start/End: Original strand, 19 - 318
Target Start/End: Complemental strand, 23596107 - 23595810
Alignment:
| Q |
19 |
acaatgacaccgtacttttattaagttttaaagtgtagtttttaacaaaaactacactggttagccgtgattctgtaattctcacaaacactacaaacaa |
118 |
Q |
| |
|
|||||||||| ||| |||||| ||| | || ||||||| |||||||||||| ||||| ||| ||| ||||| || ||||||||| |||| | ||| || |
|
|
| T |
23596107 |
acaatgacactgtaattttataaagctctagagtgtagcttttaacaaaaataacacttgttcgccatgattttgcaattctcaccaacagtccaataaa |
23596008 |
T |
|
| Q |
119 |
tgcactaggagaatatgatcgagtaaaggctcttacgctgtagtctcttggccaccgccttgggaactggtgctgtagaagattccggcaggcttccctg |
218 |
Q |
| |
|
|| |||| ||||||||||| | ||||||||||| || |||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
23596007 |
tgtacta--agaatatgatccactaaaggctcttccgttgtagtctcttggccatcgccttgggaactgatgctgtagaagattccggcaggcttccctg |
23595910 |
T |
|
| Q |
219 |
caagctgttgtgttttccatagaccaccagttgcatctagaaaggctttaaactgagcagccatcattccaaatcttgttggaaatccaaagacaaaacc |
318 |
Q |
| |
|
|||||||||| |||||||| ||||||||| ||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
23595909 |
caagctgttgcgttttccagagaccaccaattgcatctataaaggctttaaactaagcagccatcattccaaatcttgttggaaatccaaagaaaaaacc |
23595810 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 161; E-Value: 7e-86
Query Start/End: Original strand, 19 - 318
Target Start/End: Complemental strand, 23605029 - 23604732
Alignment:
| Q |
19 |
acaatgacaccgtacttttattaagttttaaagtgtagtttttaacaaaaactacactggttagccgtgattctgtaattctcacaaacactacaaacaa |
118 |
Q |
| |
|
|||||||||| ||| |||||| ||| | || ||||||| |||||||||||| ||||| ||| ||| ||||| || ||||||||| |||| | ||| || |
|
|
| T |
23605029 |
acaatgacactgtaattttataaagctctagagtgtagcttttaacaaaaataacacttgttcgccatgattttgcaattctcaccaacagtccaataaa |
23604930 |
T |
|
| Q |
119 |
tgcactaggagaatatgatcgagtaaaggctcttacgctgtagtctcttggccaccgccttgggaactggtgctgtagaagattccggcaggcttccctg |
218 |
Q |
| |
|
|| |||| ||||||||||| | ||||||||||| || |||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
23604929 |
tgtacta--agaatatgatccactaaaggctcttccgttgtagtctcttggccatcgccttgggaactgatgctgtagaagattccggcaggcttccctg |
23604832 |
T |
|
| Q |
219 |
caagctgttgtgttttccatagaccaccagttgcatctagaaaggctttaaactgagcagccatcattccaaatcttgttggaaatccaaagacaaaacc |
318 |
Q |
| |
|
|||||||||| |||||||| ||||||||| ||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
23604831 |
caagctgttgcgttttccagagaccaccaattgcatctataaaggctttaaactaagcagccatcattccaaatcttgttggaaatccaaagaaaaaacc |
23604732 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 157; E-Value: 2e-83
Query Start/End: Original strand, 118 - 318
Target Start/End: Complemental strand, 23590747 - 23590547
Alignment:
| Q |
118 |
atgcactaggagaatatgatcgagtaaaggctcttacgctgtagtctcttggccaccgccttgggaactggtgctgtagaagattccggcaggcttccct |
217 |
Q |
| |
|
|||||||| || |||| | |||||||||||||||||||||||||||||||| ||||||||||||||||| ||| |||||||||||| ||||||||||||| |
|
|
| T |
23590747 |
atgcactaagataataggttcgagtaaaggctcttacgctgtagtctcttgtccaccgccttgggaactagtgttgtagaagattctggcaggcttccct |
23590648 |
T |
|
| Q |
218 |
gcaagctgttgtgttttccatagaccaccagttgcatctagaaaggctttaaactgagcagccatcattccaaatcttgttggaaatccaaagacaaaac |
317 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
23590647 |
acaagctgttgtgttttccaaagaccaccagttgcatctagaaaggctttaaattgagcagccatcattccaaatcttgttggaaatccaaagacaaaac |
23590548 |
T |
|
| Q |
318 |
c |
318 |
Q |
| |
|
| |
|
|
| T |
23590547 |
c |
23590547 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 203 - 262
Target Start/End: Original strand, 23564476 - 23564535
Alignment:
| Q |
203 |
ccggcaggcttccctgcaagctgttgtgttttccatagaccaccagttgcatctagaaag |
262 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||| ||||| | ||||||||| |
|
|
| T |
23564476 |
ccggcaggcttccctgcaagctgtcctgttttccatagacctacagtttcttctagaaag |
23564535 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 96; Significance: 5e-47; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 96; E-Value: 5e-47
Query Start/End: Original strand, 147 - 318
Target Start/End: Complemental strand, 34339765 - 34339594
Alignment:
| Q |
147 |
gctcttacgctgtagtctcttggccaccgccttgggaactggtgctgtagaagattccggcaggcttccctgcaagctgttgtgttttccatagaccacc |
246 |
Q |
| |
|
|||||||||||||||||||||| || || ||||| |||| |||||||||||||||||||||||||| ||||||||| ||||| |||||| | |||||| |
|
|
| T |
34339765 |
gctcttacgctgtagtctcttgtcctccaccttgagaaccagtgctgtagaagattccggcaggcttgcctgcaagcgattgtgctttccacaaaccacc |
34339666 |
T |
|
| Q |
247 |
agttgcatctagaaaggctttaaactgagcagccatcattccaaatcttgttggaaatccaaagacaaaacc |
318 |
Q |
| |
|
||| ||||| ||||| ||||| || ||||||||||||||||||||||||||||| || |||||||||||||| |
|
|
| T |
34339665 |
agtagcatcaagaaaagctttgaattgagcagccatcattccaaatcttgttgggaagccaaagacaaaacc |
34339594 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 157 - 298
Target Start/End: Original strand, 2649383 - 2649524
Alignment:
| Q |
157 |
tgtagtctcttggccaccgccttgggaactggtgctgtagaagattccggcaggcttccctgcaagctgttgtgttttccatagaccaccagttgcatct |
256 |
Q |
| |
|
|||||| ||||||||||| ||||| || |||||||| ||||| || |||||||| |||||||| | ||||| |||||| | ||||||| ||| |
|
|
| T |
2649383 |
tgtagtttcttggccacctccttgacaagcagtgctgtaaaagatgccagcaggctttcctgcaagtttctgtgtgcaccataggtctccagttgtatcc |
2649482 |
T |
|
| Q |
257 |
agaaaggctttaaactgagcagccatcattccaaatcttgtt |
298 |
Q |
| |
|
| ||| ||||| || |||| |||||||||||||||||||||| |
|
|
| T |
2649483 |
ataaatgctttgaattgagtagccatcattccaaatcttgtt |
2649524 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 206 - 318
Target Start/End: Original strand, 2645619 - 2645731
Alignment:
| Q |
206 |
gcaggcttccctgcaagctgttgtgttttccatagaccaccagttgcatctagaaaggctttaaactgagcagccatcattccaaatcttgttggaaatc |
305 |
Q |
| |
|
|||||||| |||||||| |||| | ||||||| || ||||||||||| | ||| |||| || ||||||| |||||||||| |||||| |||||| | |
|
|
| T |
2645619 |
gcaggctttcctgcaagtgtttgtttgttccataaacttccagttgcatcaaaaaatactttgaattgagcagacatcattccatatcttgctggaaaac |
2645718 |
T |
|
| Q |
306 |
caaagacaaaacc |
318 |
Q |
| |
|
|||| | |||||| |
|
|
| T |
2645719 |
caaacaaaaaacc |
2645731 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 49; Significance: 5e-19; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 157 - 297
Target Start/End: Complemental strand, 36461849 - 36461709
Alignment:
| Q |
157 |
tgtagtctcttggccaccgccttgggaactggtgctgtagaagattccggcaggcttccctgcaagctgttgtgttttccatagaccaccagttgcatct |
256 |
Q |
| |
|
|||||||||||| || || || || |||| |||||||| |||||||| |||||||| |||||||| || || |||||| |||||||||||||| |
|
|
| T |
36461849 |
tgtagtctcttgtcctcctccctgagaaccagtgctgtaaaagattcctgcaggctttcctgcaagtgcctgagtacgccataggccaccagttgcatcc |
36461750 |
T |
|
| Q |
257 |
agaaaggctttaaactgagcagccatcattccaaatcttgt |
297 |
Q |
| |
|
| || ||||||||||||||||||||||||||||||||||| |
|
|
| T |
36461749 |
aagaatgctttaaactgagcagccatcattccaaatcttgt |
36461709 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 235 - 296
Target Start/End: Complemental strand, 36455400 - 36455339
Alignment:
| Q |
235 |
ccatagaccaccagttgcatctagaaaggctttaaactgagcagccatcattccaaatcttg |
296 |
Q |
| |
|
|||||| |||||||||||||| | || |||||||||||||||||||||||||||||||||| |
|
|
| T |
36455400 |
ccataggccaccagttgcatccaagaatgctttaaactgagcagccatcattccaaatcttg |
36455339 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University