View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15983_low_6 (Length: 254)
Name: NF15983_low_6
Description: NF15983
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15983_low_6 |
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Alignment Details
Target: chr4 (Bit Score: 235; Significance: 1e-130; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 1 - 239
Target Start/End: Original strand, 26735151 - 26735389
Alignment:
| Q |
1 |
gacttcagccgaaacatgcttaccggtgaggttcctaaagggatgaagaatctgaaggttctaagcatttttaatgtttcgcataataacatatctggga |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
26735151 |
gacttcagccgaaacatgcttaccggtgaggttcctaaagggatgaagaatctgaaggttctaagcatttttaatgtttcgcataatagcatatctggga |
26735250 |
T |
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| Q |
101 |
aaatccctgatgagattagattcatgacgagtctaacgacgctggatttatcttacaacaattttaccggaattgtccccacaggtggtcagtttttggt |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26735251 |
aaatccctgatgagattagattcatgacgagtctaacgacgctggatttatcttacaacaattttaccggaattgtccccacaggtggtcagtttttggt |
26735350 |
T |
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| Q |
201 |
cttcaacgaccggtcatttgccggaaatcctagcctatg |
239 |
Q |
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||||||||||||||||||||||||||||||||||||||| |
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| T |
26735351 |
cttcaacgaccggtcatttgccggaaatcctagcctatg |
26735389 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 171; E-Value: 6e-92
Query Start/End: Original strand, 1 - 239
Target Start/End: Original strand, 26726837 - 26727075
Alignment:
| Q |
1 |
gacttcagccgaaacatgcttaccggtgaggttcctaaagggatgaagaatctgaaggttctaagcatttttaatgtttcgcataataacatatctggga |
100 |
Q |
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|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||| |||||||||||||||| |||||| ||| |
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| T |
26726837 |
gacttcagcctaaacatgcttaccggtgaggttcctaaagggatgaagaatctgaaggtgctaaacattttgaatgtttcgcataatagcatatcggggc |
26726936 |
T |
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| Q |
101 |
aaatccctgatgagattagattcatgacgagtctaacgacgctggatttatcttacaacaattttaccggaattgtccccacaggtggtcagtttttggt |
200 |
Q |
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||||||| |||| ||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||| |
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| T |
26726937 |
aaatccccaatgatattagattcatgatgagtctaacgacgctggatttatcttacaacaatttcaccggaattgtccccaccggtggtcagtttttggt |
26727036 |
T |
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| Q |
201 |
cttcaacgaccggtcatttgccggaaatcctagcctatg |
239 |
Q |
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|||||||||||| |||||||| ||||| |||||| |||| |
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| T |
26727037 |
cttcaacgaccgttcatttgcgggaaaccctagcttatg |
26727075 |
T |
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