View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15983_low_7 (Length: 226)
Name: NF15983_low_7
Description: NF15983
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15983_low_7 |
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| [»] scaffold0059 (2 HSPs) |
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| [»] scaffold0013 (2 HSPs) |
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Alignment Details
Target: scaffold0059 (Bit Score: 129; Significance: 6e-67; HSPs: 2)
Name: scaffold0059
Description:
Target: scaffold0059; HSP #1
Raw Score: 129; E-Value: 6e-67
Query Start/End: Original strand, 17 - 181
Target Start/End: Original strand, 3523 - 3687
Alignment:
| Q |
17 |
aataaattacgacccttggtcaaagccacaccaaagcatctgacataggtggaagatataagcttaacatggggttcctctttcataacttttatatgcc |
116 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||| ||||||| |
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| T |
3523 |
aataaattacgacccttggtcaaagccacaccaaagcatctgacataggtgaaagatataagcataacatggggttcctctttcataacttatatatgca |
3622 |
T |
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| Q |
117 |
cttgaataaaataactttataccgaacctgatagcttaacttgggcttccattgtaatggttgat |
181 |
Q |
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| T |
3623 |
cttgaataaaacaactttatacggaacctgataggttaacttgggcttccatcgtaattgttgat |
3687 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0059; HSP #2
Raw Score: 126; E-Value: 4e-65
Query Start/End: Original strand, 17 - 181
Target Start/End: Original strand, 9682 - 9847
Alignment:
| Q |
17 |
aataaattacgacccttggtcaaagccacaccaaagcatctgacataggtggaagatataagcttaacatggggttcctctttcataacttttatatgcc |
116 |
Q |
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||||||||||||||||||||||||||||||||||||| |||||||||| || ||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
9682 |
aataaattacgacccttggtcaaagccacaccaaagcttctgacatagatgaaagatataagcttaacatggggttcctctttcataacttatatatgca |
9781 |
T |
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| Q |
117 |
cttgaataaaataac-tttataccgaacctgatagcttaacttgggcttccattgtaatggttgat |
181 |
Q |
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| T |
9782 |
cttgaataaaataacttttatacggaatctgatagcttaacttgggcttccattgtaattgttgat |
9847 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0013 (Bit Score: 126; Significance: 4e-65; HSPs: 2)
Name: scaffold0013
Description:
Target: scaffold0013; HSP #1
Raw Score: 126; E-Value: 4e-65
Query Start/End: Original strand, 17 - 181
Target Start/End: Complemental strand, 235716 - 235551
Alignment:
| Q |
17 |
aataaattacgacccttggtcaaagccacaccaaagcatctgacataggtggaagatataagcttaacatggggttcctctttcataacttttatatgcc |
116 |
Q |
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||||||||||||||||||||||||||||||||||||| |||||||||| || ||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
235716 |
aataaattacgacccttggtcaaagccacaccaaagcttctgacatagatgaaagatataagcttaacatggggttcctctttcataacttatatatgca |
235617 |
T |
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| Q |
117 |
cttgaataaaataac-tttataccgaacctgatagcttaacttgggcttccattgtaatggttgat |
181 |
Q |
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| T |
235616 |
cttgaataaaataacttttatacggaatctgatagcttaacttgggcttccattgtaattgttgat |
235551 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0013; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 17 - 99
Target Start/End: Complemental strand, 244467 - 244384
Alignment:
| Q |
17 |
aataaattacgacccttggtcaaagccaca-ccaaagcatctgacataggtggaagatataagcttaacatggggttcctcttt |
99 |
Q |
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| T |
244467 |
aataaattatggcacttggtcaaagccacacccaaagcatctgacatagataaaaggtgcaagtttaacatgggcttcctcttt |
244384 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 68; Significance: 2e-30; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 110 - 210
Target Start/End: Original strand, 22604669 - 22604769
Alignment:
| Q |
110 |
atatgcccttgaataaaataactttataccgaacctgatagcttaacttgggcttccattgtaatggttgataannnnnnnccatattgtggggaaatat |
209 |
Q |
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|||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
22604669 |
atatgcacttgaataaaataactttatatggaacctgatagcttaacttgggcttccattgtaatggttgataatttttttccatattgtggggaaatat |
22604768 |
T |
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| Q |
210 |
t |
210 |
Q |
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| T |
22604769 |
t |
22604769 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 17 - 103
Target Start/End: Original strand, 22601309 - 22601395
Alignment:
| Q |
17 |
aataaattacgacccttggtcaaagccacaccaaagcatctgacataggtggaagatataagcttaacatggggttcctctttcata |
103 |
Q |
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||||||||||||| ||||||||||||||||| ||||||||||||||||||| ||||| ||||||||| |||| |||||| |||||| |
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| T |
22601309 |
aataaattacgacgcttggtcaaagccacacgaaagcatctgacataggtgaaagatgcaagcttaacttgggcttcctcattcata |
22601395 |
T |
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