View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15984_high_10 (Length: 459)
Name: NF15984_high_10
Description: NF15984
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15984_high_10 |
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Alignment Details
Target: chr5 (Bit Score: 374; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 374; E-Value: 0
Query Start/End: Original strand, 8 - 442
Target Start/End: Complemental strand, 40226726 - 40226291
Alignment:
| Q |
8 |
agagatgaacaccaagaacacattgaagaaaagcattaaggactatcataacatttgttctaaatctggtaaattttttacccttcaatgttaatcttcc |
107 |
Q |
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| T |
40226726 |
agagaagaacaccaagaacacattgaagaaaagcattaaggactatcataacatttgttctaaatctggtaagttttttacccttcaatgttaatcttcc |
40226627 |
T |
|
| Q |
108 |
acattgtcccaattatttaattacttttttcaattgcaaggttctgaatttctggtttcacatcaaatattgtattcattttcannnnnnnnnn-gcaaa |
206 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
40226626 |
acattgtcccaattatttaattacttttttcaattgcaaggttctgaatttctggtttcacatcaaatattgtattcatttttttatttttttttgcaaa |
40226527 |
T |
|
| Q |
207 |
gggtattgattttcatgttaaagaggttcaatttaatgtctcatgtctagagattattgttgttttctttatgaaatgttagcacatcaatgttgttttc |
306 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40226526 |
gggtattgattttcatgttaaagaggttcaatttaatgtctcatgtctagatattattgttgttttctttatgaaatgttagcacatcaatgttgttttc |
40226427 |
T |
|
| Q |
307 |
tttaattgtaaaaatttatattgtagatggtggcaaacggaagtacatagcagaggaagaaaacacaagaaatggaaaaggaaatattacctctaagata |
406 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40226426 |
tttaattgtaaaaatttatattgtagatggtggcaaacggaagtacatagcagaggaagaaaacacaagaaatggaaaaggaaatattacctctaagata |
40226327 |
T |
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| Q |
407 |
ttttcttaccatgagctatgtgttgcagctaagaat |
442 |
Q |
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||||||||||||||||||||||||||| |||||||| |
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| T |
40226326 |
ttttcttaccatgagctatgtgttgcaactaagaat |
40226291 |
T |
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