View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15984_high_15 (Length: 359)
Name: NF15984_high_15
Description: NF15984
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15984_high_15 |
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Alignment Details
Target: chr5 (Bit Score: 303; Significance: 1e-170; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 303; E-Value: 1e-170
Query Start/End: Original strand, 9 - 343
Target Start/End: Original strand, 32912415 - 32912748
Alignment:
| Q |
9 |
gagaagaacactcacatttctgttcagtttgcacgtgactataagatccaatggaatgcagcaagacgacaacaaactacaccggaggatagcaacaaca |
108 |
Q |
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| T |
32912415 |
gagaagaacactcacatttctgttcagtttgcacgtgactataagatccaatggaatgcagcaagacgacaacaaactacaccggaggatagcaacaaca |
32912514 |
T |
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| Q |
109 |
acatccaaattcgatgactaccaccgatgaaaggagaggtaaaatgtaatgttgatgctgtactttttaaagaacataattgttttggtgttggaacgtg |
208 |
Q |
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| T |
32912515 |
acatccaaattcgatggctaccaccgatgaaaggagaggtaaaatgtaatgttgatgctgcactttttaaagaacataattgttttggtgttggaatgtg |
32912614 |
T |
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| Q |
209 |
tcttagagattctagaggtcattttatgaaagcaaaaacaacaacattttatggtgtgcctcttccatacgaagcagaagcttgtggactcaaggaaagc |
308 |
Q |
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| T |
32912615 |
tcttagagattctagaggtcattttatgaaagcaaaaacaacaacattttatggtgtgcctcttccatacgaagcagaagtttgtggactcaagg-aagc |
32912713 |
T |
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| Q |
309 |
tattctttgacttggagttatggatatgtcaattg |
343 |
Q |
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| T |
32912714 |
tattctttgacttggagatatggatgtgtcaattg |
32912748 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 45; Significance: 1e-16; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 141 - 241
Target Start/End: Original strand, 40316012 - 40316112
Alignment:
| Q |
141 |
ggagaggtaaaatgtaatgttgatgctgtactttttaaagaacataattgttttggtgttggaacgtgtcttagagattctagaggtcattttatgaaag |
240 |
Q |
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| T |
40316012 |
ggagaggtaaaatgtaatgttgatgcagctctttttaaagaaaatcattgttttggtgttggtatgtgtattcgtgattatagaggccactttataaaag |
40316111 |
T |
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| Q |
241 |
c |
241 |
Q |
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| T |
40316112 |
c |
40316112 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 141 - 233
Target Start/End: Original strand, 34407708 - 34407799
Alignment:
| Q |
141 |
ggagaggtaaaatgtaatgttgatgctgtactttttaaagaacataattgttttggtgttggaacgtgtcttagagattctagaggtcatttt |
233 |
Q |
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||||||||||| || ||||||||| ||| ||| ||||||||| || |||| |||||||| || | ||||||||||||| |||||||||||||| |
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| T |
34407708 |
ggagaggtaaa-tgcaatgttgatactgcactatttaaagaaaatcattgatttggtgtgggcatgtgtcttagagatgctagaggtcatttt |
34407799 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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