View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15984_high_28 (Length: 265)
Name: NF15984_high_28
Description: NF15984
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15984_high_28 |
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| [»] scaffold0061 (1 HSPs) |
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| [»] scaffold0017 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 203; Significance: 1e-111; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 21 - 248
Target Start/End: Original strand, 27778252 - 27778479
Alignment:
| Q |
21 |
aataatgagtgaactttctatttttcatcctctcaaaaaagcattcaagtgaaagacnnnnnnngtttgtcattaataatttacgttacttgtgacttgc |
120 |
Q |
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| T |
27778252 |
aataatgagtgaactttctatttttcatcctctcaaaaaagcattcaagtgaaagacaaaaaaagtttgtcattaataatttacgttacttgtgacttgc |
27778351 |
T |
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| Q |
121 |
taattgccattgaacttccatcatgctttttcttgagaggaacttccttcatgcttggttaccaattaaacaaaaattacaccataaataatttacgtta |
220 |
Q |
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| T |
27778352 |
taattgccattgaacttccatcatgctttttcttgagaggaacttccttcatgcttggttaccaattaaacaaaaattacaccataaattatttacgtta |
27778451 |
T |
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| Q |
221 |
tttctaacttactttcaggcttggtata |
248 |
Q |
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|||||||||||||||||||||||||||| |
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| T |
27778452 |
tttctaacttactttcaggcttggtata |
27778479 |
T |
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Target: scaffold0061 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: scaffold0061
Description:
Target: scaffold0061; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 97 - 148
Target Start/End: Complemental strand, 51148 - 51097
Alignment:
| Q |
97 |
taatttacgttacttgtgacttgctaattgccattgaacttccatcatgctt |
148 |
Q |
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| T |
51148 |
taatttacgttatttgtgacttaccaattgtcattgaacttccatcatgctt |
51097 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0017 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: scaffold0017
Description:
Target: scaffold0017; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 97 - 148
Target Start/End: Original strand, 147486 - 147537
Alignment:
| Q |
97 |
taatttacgttacttgtgacttgctaattgccattgaacttccatcatgctt |
148 |
Q |
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| T |
147486 |
taatttacgttatttgtgacttaccaattgtcattgaacttccatcatgctt |
147537 |
T |
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Target: chr3 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 97 - 148
Target Start/End: Original strand, 5881289 - 5881340
Alignment:
| Q |
97 |
taatttacgttacttgtgacttgctaattgccattgaacttccatcatgctt |
148 |
Q |
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| T |
5881289 |
taatttacgttatttgtgacttaccaattgtcattgaacctccatcatgctt |
5881340 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 97 - 142
Target Start/End: Original strand, 40652267 - 40652312
Alignment:
| Q |
97 |
taatttacgttacttgtgacttgctaattgccattgaacttccatc |
142 |
Q |
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| T |
40652267 |
taatttacgttatttgtgacttaccaattgtcattgaacttccatc |
40652312 |
T |
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