View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15984_high_34 (Length: 239)
Name: NF15984_high_34
Description: NF15984
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15984_high_34 |
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Alignment Details
Target: chr2 (Bit Score: 213; Significance: 1e-117; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 1 - 221
Target Start/End: Original strand, 34219612 - 34219832
Alignment:
| Q |
1 |
actgattgaaaagtaaattgaaaaactcacaatcttaattttcgtgtcctctaggcatggagaatgtggtcggaaaaaatgcagttggaactgatagatg |
100 |
Q |
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| T |
34219612 |
actgattgaaaagtaaattgaaaaactcacaatcttaattttcgtgtcctctaggcatggagaatgtggtccgaaaaaatgcagttggaactgatagatg |
34219711 |
T |
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| Q |
101 |
aatgtctaggcgattcgattgctgtagctgaacctgaaatgttgagatgtattcaaataggacttttatgtgttcaagagagatctgatgataggccaga |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34219712 |
aatgtctaggcgattcgattgctgtagctgaacctgaaatattgagatgtattcaaataggacttttatgtgttcaagagagatctgatgataggccaga |
34219811 |
T |
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| Q |
201 |
catgtcagcagtagttctaat |
221 |
Q |
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||||||||||||||||||||| |
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| T |
34219812 |
catgtcagcagtagttctaat |
34219832 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 3 - 221
Target Start/End: Original strand, 34208447 - 34208664
Alignment:
| Q |
3 |
tgattgaaaagtaaattgaaaaactcacaatcttaattttcgtgtcctctaggcatggagaatgtggtcggaaaaaatgcagttggaactgatagatgaa |
102 |
Q |
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||||||||||||||| | |||| |||||||||||||||||| |||||||||||||||||||||||||| || || || |||| |||||||||||| |
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| T |
34208447 |
tgattgaaaagtaaactcaaaa-ctcacaatcttaattttcatgtcctctaggcatggagaatgtggtgtgactcaacgccgttgatgctgatagatgaa |
34208545 |
T |
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| Q |
103 |
tgtctaggcgattcgattgctgtagctgaacctgaaatgttgagatgtattcaaataggacttttatgtgttcaagagagatctgatgataggccagaca |
202 |
Q |
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| T |
34208546 |
tctctaagcgattcgattgctgtagccgaacctgaaatattgagatgtattcagatagggcttttatgtgtgcaagagagacctgatgacagaccagaca |
34208645 |
T |
|
| Q |
203 |
tgtcagcagtagttctaat |
221 |
Q |
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||||||||| ||||||||| |
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| T |
34208646 |
tgtcagcagcagttctaat |
34208664 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 1 - 221
Target Start/End: Complemental strand, 34192079 - 34191861
Alignment:
| Q |
1 |
actgattgaaaagtaaattgaaaaactcacaatcttaattttcgtgtcctctaggcatggagaatgtggtcggaaaaaatgcagttggaactgatagatg |
100 |
Q |
| |
|
||||||||||||||||| | |||| ||||| ||||||| ||| || |||| |||||||||||| ||||| |||| || || |||||| |||||||| | |
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| T |
34192079 |
actgattgaaaagtaaactcaaaa-ctcactatcttaacttttgtatcct-taggcatggagattgtggagcgaaacaacgccgttggagctgatagaag |
34191982 |
T |
|
| Q |
101 |
aatgtctaggcgattcgattgctgtagctgaacctgaaatgttgagatgtattcaaataggacttttatgtgttcaagagagatctgatgataggccaga |
200 |
Q |
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||| ||| ||||||| | || || ||| ||| ||||||| |||||||||||||| ||||| ||||||||||||||||||| | |||||||||||||||| |
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| T |
34191981 |
aatcgctacgcgattccactgttggagcagaagctgaaatattgagatgtattcagatagggcttttatgtgttcaagagaaagctgatgataggccaga |
34191882 |
T |
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| Q |
201 |
catgtcagcagtagttctaat |
221 |
Q |
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||||||||| | ||||||||| |
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| T |
34191881 |
catgtcagctgcagttctaat |
34191861 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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