View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15984_high_7 (Length: 524)
Name: NF15984_high_7
Description: NF15984
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15984_high_7 |
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Alignment Details
Target: chr3 (Bit Score: 231; Significance: 1e-127; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 14 - 306
Target Start/End: Complemental strand, 37823888 - 37823611
Alignment:
| Q |
14 |
cataggcaaaacttaatttttaaacttgagaaatgaaaattacttgattcaaaggtttgttaaataataaataaaaatgctaccataatgttggctcatt |
113 |
Q |
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| T |
37823888 |
cataggcaaaacttaatttttaaacttgagaaatgaaaattacttgattcaaaggtttgttaaataataaataaaaatgctaccataatgttggctcatt |
37823789 |
T |
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| Q |
114 |
agttgtgtcatgttaaactaaactattcagccttcgctaaaacaggtttaacaaaaacagcagtgcttggaagcagagtcgggttcaatggtctgtttaa |
213 |
Q |
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| T |
37823788 |
agttgtgtcatgttaaactaaactattcagccttc---------------actaaaacagcagtgcttggaagcagagtcgggttcaatggtctgtttat |
37823704 |
T |
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| Q |
214 |
cactagcttagaagaaaaaagcaatgcaagtttggtcagtgaccgttctttttcctaagagatgtgcaaggtccaagagctccatagattttg |
306 |
Q |
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| T |
37823703 |
cactagcttggaagaaaaaagcaatgcaagtttggtcagtgaccgttctttttcctaagagatgtgcaaggtccaagagctccatagattttg |
37823611 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 131; E-Value: 1e-67
Query Start/End: Original strand, 365 - 503
Target Start/End: Complemental strand, 37823386 - 37823248
Alignment:
| Q |
365 |
gtcattgtgggttctcattgattgccagaaatcagagtccaaaaccagtccaggttcagaagcgaagaccatgattctagagccagtattcacaaaacaa |
464 |
Q |
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| T |
37823386 |
gtcattgtgggttctcattgattgccagaaatcagagtccaaaaccagtccaggtccagaagcgaagaccatgattctagagccagtattcacaaaacaa |
37823287 |
T |
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| Q |
465 |
cactctaagagtccaagggctgctgaaattgcaactccc |
503 |
Q |
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| T |
37823286 |
cactctaagagtccaagggctgctgaaaatgcaactccc |
37823248 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 312 - 350
Target Start/End: Complemental strand, 37823435 - 37823397
Alignment:
| Q |
312 |
ttagcaatctgcttatataaactgcaagatgtccattgc |
350 |
Q |
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| T |
37823435 |
ttagcaatttgcttgtataaactgcaagatgtccattgc |
37823397 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 63; Significance: 4e-27; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 365 - 502
Target Start/End: Original strand, 47597850 - 47598002
Alignment:
| Q |
365 |
gtcattgtgggttctcattgattgccagaaatcagagtccaaaaccagtccaggttca---------------gaagcgaagaccatgattctagagcca |
449 |
Q |
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| T |
47597850 |
gtcattgtgggttctcatggattgccggaaatcagagtccacaaccagtccaggtccaagagtcgcaggcccagaagtgaagaccatgattctagagccg |
47597949 |
T |
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| Q |
450 |
gtattcacaaaacaacactctaagagtccaagggctgctgaaattgcaactcc |
502 |
Q |
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| T |
47597950 |
gtatttacaaaacaacactctaaaagtccaagggcagctgaaattgcagctcc |
47598002 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 200 - 255
Target Start/End: Original strand, 47597385 - 47597440
Alignment:
| Q |
200 |
aatggtctgtttaacactagcttagaagaaaaaagcaatgcaagtttggtcagtga |
255 |
Q |
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| T |
47597385 |
aatggtctgtttatcactaacttggaagaaaaaagcaatgcaagttcggtcagtga |
47597440 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 257 - 306
Target Start/End: Original strand, 47597501 - 47597550
Alignment:
| Q |
257 |
cgttctttttcctaagagatgtgcaaggtccaagagctccatagattttg |
306 |
Q |
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|||||||||| |||||||| |||||||||||||||||||| | |||||| |
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| T |
47597501 |
cgttcttttttctaagagacatgcaaggtccaagagctccagaaattttg |
47597550 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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