View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15984_high_9 (Length: 470)
Name: NF15984_high_9
Description: NF15984
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15984_high_9 |
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| [»] scaffold0245 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 406; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 406; E-Value: 0
Query Start/End: Original strand, 1 - 455
Target Start/End: Complemental strand, 1309532 - 1309076
Alignment:
| Q |
1 |
tacgttcctgttaagtaccggtgcttcaaaatgtttaagctaaactagagaatgcccacatatacctctaaaagagtaggtaggtaaaaccatgttccca |
100 |
Q |
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| T |
1309532 |
tacgttcctgttaagtaccggtgcttcaaaatgtttaagctaaactagagaatgcccacatatacctctaaaagagtaggtaggtaaaaccatgttccca |
1309433 |
T |
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| Q |
101 |
acttatgtatggttatttttcacttctaggacattgtcactgaagctggacaagatagagatagcgatggttccaatcatggtctagcttttgaggttct |
200 |
Q |
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| T |
1309432 |
acttatgtatggttatttttcacttctaggacattgtcactgaagctggacgagatagagacagtgatggatccaatcatgatctagcttttgaggttct |
1309333 |
T |
|
| Q |
201 |
taattccctaaaggt--tatatttctggaaatttattgttgtttatgctattgaaaataatttaatgcttccccttttatgtgccagtctgtgcctcatt |
298 |
Q |
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| T |
1309332 |
aaattcattgaaggtaatatatttctggaaatttattgttgtttatgctattgaaaataatttaatgcttccccttttatgtgccagtctgtgcctcatt |
1309233 |
T |
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| Q |
299 |
agtttatttatatacactgcgtttctcggcttccttacgttgctttgctaatggccagtgggtttttaaacggagggtcttggcatatatacaaacaaga |
398 |
Q |
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| T |
1309232 |
agtttatttatatacactgcgtttctcggcttccttacgttgctttgctaatggccagtgggtttttaaacggagggtcttggcatatatacaaacaaga |
1309133 |
T |
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| Q |
399 |
tggcaagggcacttgtaaatgtaaattacagtagtttcttgtcttccacattctatt |
455 |
Q |
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| T |
1309132 |
tggcaagggcacttgtaaatgtaaattgcagtagtttcttgtcttccacattctatt |
1309076 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 158; E-Value: 7e-84
Query Start/End: Original strand, 101 - 455
Target Start/End: Complemental strand, 1288886 - 1288530
Alignment:
| Q |
101 |
acttatgtatggttatttttcacttctaggacattgtcactgaagctggacaagatagagatagcgatggttccaatcatggtctagcttttgaggttct |
200 |
Q |
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| T |
1288886 |
acttatgtatggttctttttcactcctaggacattgtcactgaagctggacgagatagagacagtgatggatccaatcatgatctagcttttgaggttct |
1288787 |
T |
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| Q |
201 |
taattccctaaaggt--tatatttctggaaatttattgttgtttatgctattgaaaataatttaatgcttccccttttatgtgccagtctgtgcctcatt |
298 |
Q |
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| T |
1288786 |
aaattcattgaaggtaatatatttctggaaatttattgtttcttatgcttttcaaaatgatttcacgcctctccattcatgtgccagtctgtgccttgtt |
1288687 |
T |
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| Q |
299 |
agtttatttatatacactgcgtttctcggcttccttacgttgctttgctaatggccagtgggtttttaaacggagggtcttggcatatatacaaacaaga |
398 |
Q |
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| T |
1288686 |
cctttctttgtatacactgcttttcttggcttccttatgttgctttgccaatggccattgggtttttaaaagggctgtcttggcatatatacagacaaaa |
1288587 |
T |
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| Q |
399 |
tggcaagggcacttgtaaatgtaaattacagtagtttcttgtcttccacattctatt |
455 |
Q |
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| T |
1288586 |
ctgcaagggcccttgtaaatttaaattgtagtagttccttgtcttccactttctatt |
1288530 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0245 (Bit Score: 158; Significance: 7e-84; HSPs: 1)
Name: scaffold0245
Description:
Target: scaffold0245; HSP #1
Raw Score: 158; E-Value: 7e-84
Query Start/End: Original strand, 101 - 455
Target Start/End: Complemental strand, 15290 - 14934
Alignment:
| Q |
101 |
acttatgtatggttatttttcacttctaggacattgtcactgaagctggacaagatagagatagcgatggttccaatcatggtctagcttttgaggttct |
200 |
Q |
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|||||||||||||| ||||||||| |||||||||||||||||||||||||| ||||||||| || ||||| |||||||||| |||||||||||||||||| |
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| T |
15290 |
acttatgtatggttctttttcactcctaggacattgtcactgaagctggacgagatagagacagtgatggatccaatcatgatctagcttttgaggttct |
15191 |
T |
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| Q |
201 |
taattccctaaaggt--tatatttctggaaatttattgttgtttatgctattgaaaataatttaatgcttccccttttatgtgccagtctgtgcctcatt |
298 |
Q |
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| T |
15190 |
aaattcattgaaggtaatatatttctggaaatttattgtttcttatgcttttcaaaatgatttcacgcctctccattcatgtgccagtctgtgccttgtt |
15091 |
T |
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| Q |
299 |
agtttatttatatacactgcgtttctcggcttccttacgttgctttgctaatggccagtgggtttttaaacggagggtcttggcatatatacaaacaaga |
398 |
Q |
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| T |
15090 |
cctttctttgtatacactgcttttcttggcttccttatgttgctttgccaatggccattgggtttttaaaagggctgtcttggcatatatacagacaaaa |
14991 |
T |
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| Q |
399 |
tggcaagggcacttgtaaatgtaaattacagtagtttcttgtcttccacattctatt |
455 |
Q |
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| T |
14990 |
ctgcaagggcccttgtaaatttaaattgtagtagttccttgtcttccactttctatt |
14934 |
T |
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