View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15984_low_1 (Length: 1009)
Name: NF15984_low_1
Description: NF15984
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15984_low_1 |
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Alignment Details
Target: chr1 (Bit Score: 353; Significance: 0; HSPs: 7)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 353; E-Value: 0
Query Start/End: Original strand, 519 - 898
Target Start/End: Complemental strand, 29445584 - 29445207
Alignment:
| Q |
519 |
tttgatttatctaccaaataaataaaagatgtcgggttaaaacttaaaaacattgagaggtctaaaccttttgaccggaaataaaagttcagtaaaaaag |
618 |
Q |
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|||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
29445584 |
tttgatttatctaccaaataaacaa--gatgtcgggttaaaacttaaaaacattgagaggtctgaaccttttgaccggaaataaaagttcagtaaaaaat |
29445487 |
T |
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| Q |
619 |
ctgaaaataaatgctcaacccgattctgtttataattaattctatcagaaagtaaaggattaaaaaatttgctgctttcctttgtaaataaataaataaa |
718 |
Q |
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| T |
29445486 |
ctgaaaataaatgctcaacccgattctatttataattaattctatcagaaagtaaaggattaaaaaatttgctgctttcctttgtaaataaataaataaa |
29445387 |
T |
|
| Q |
719 |
tttgttagcatcttacattttcttccactcaattgattttccttcctaactacagtcaattgtggaatatcaacactgctgggtgcttcagaaccacctc |
818 |
Q |
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| T |
29445386 |
tttgttagcatcttacattttcttccactcaattgattttccttcctaactacagtcaattgtggaatatcaacactgctgggtgcttcagaaccacctc |
29445287 |
T |
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| Q |
819 |
ttgaggacaccaacactgcattagacttcttactttggtttctggctttctgctgcgttattcagcatgaatcagccatc |
898 |
Q |
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| T |
29445286 |
ttgaggacaccaacactgcattagacttcttactttggtttctggctttctgctgcgttattcagcatgaatcagccatc |
29445207 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 161; E-Value: 2e-85
Query Start/End: Original strand, 8 - 176
Target Start/End: Complemental strand, 29445996 - 29445828
Alignment:
| Q |
8 |
gagtgagatgaaatcaagtggtattaaacaagataataatgtttggatttaaaagagtcgtatgaaaaagatgatggaatccatttcattccatcctctt |
107 |
Q |
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| T |
29445996 |
gagtgaaatgaaatcaagtggtattaaacaagataatattgtttggatttaaaagagtcgtatgaaaaagatgatggaatccatttcattccatcctctt |
29445897 |
T |
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| Q |
108 |
ctattagtttccattccttctaatttaggataggagatatgcaatggaatgagacatcttaattaaata |
176 |
Q |
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| T |
29445896 |
ctattagtttccattccttctaatttaggataggagatatgcaatggaatgagacatcttaattaaata |
29445828 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 139; E-Value: 3e-72
Query Start/End: Original strand, 272 - 430
Target Start/End: Complemental strand, 29445735 - 29445577
Alignment:
| Q |
272 |
gcatgcgtgcctattcttttggatttattttgctgccttttcttcgtgcgtatacatggttgtattgatagataattcatgtgggtttctttggctaatt |
371 |
Q |
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| T |
29445735 |
gcatgcatgcgtattcttttggatttattttactgccttttcttcgtgcgtatatatgattgtattgatagataattcatgtgggtttctttggctaatt |
29445636 |
T |
|
| Q |
372 |
attctttgtgcgcatgcgtgtttcctatttctgctttgtgcatggcttatgtttgattt |
430 |
Q |
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| T |
29445635 |
attctttgtgcgcatgcgtgtttcctatttctgctttgtgcatggcttatgtttgattt |
29445577 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 112; E-Value: 4e-56
Query Start/End: Original strand, 890 - 1009
Target Start/End: Complemental strand, 29445189 - 29445070
Alignment:
| Q |
890 |
tcagccatccacaatgactatgctacacaaattcacataaagaaccgaattgattcctgattaagacactcagcatcttctttacacaaattaaattttc |
989 |
Q |
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|||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29445189 |
tcagtcatccacaatgactatgctacataaattcacataaagaaccgaattgattcctgattaagacactcagcatcttctttacacaaattaaattttc |
29445090 |
T |
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| Q |
990 |
ataaacaaatgaacattttc |
1009 |
Q |
| |
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| T |
29445089 |
ataaacaaatgaacattttc |
29445070 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 111; E-Value: 2e-55
Query Start/End: Original strand, 681 - 898
Target Start/End: Original strand, 29421217 - 29421424
Alignment:
| Q |
681 |
aaaaatttgct-gctttcctttgtaaataaa-taaataaatttgttagcatcttacattttcttccactcaattgattttccttcctaactacagtcaat |
778 |
Q |
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||||||||||| ||||||||||||||| ||| |||||||||||||| | |||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
29421217 |
aaaaatttgctagctttcctttgtaaacaaaataaataaatttgtttgtctcttacattttcttccactcaagtgattttccttcctaactacagtcaat |
29421316 |
T |
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| Q |
779 |
tgtggaatatcaacactgctgggtgcttcagaaccacctcttgaggacaccaacactgcattagacttcttactttggtttctggctttctgctgcgtta |
878 |
Q |
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|||||||||| |||||| ||||| |||||||||||||||||||||||||||||||||||| ||||||||| | | ||||||||||||| |
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| T |
29421317 |
tgtggaatat------------gtgctttagaactacctcttgaggacaccaacactgcattagacttctttctttggtttttagttttctgctgcgttg |
29421404 |
T |
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| Q |
879 |
ttcagcatgaatcagccatc |
898 |
Q |
| |
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|||||||||||| ||||||| |
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| T |
29421405 |
ttcagcatgaatgagccatc |
29421424 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 73; E-Value: 8e-33
Query Start/End: Original strand, 900 - 1009
Target Start/End: Original strand, 29421511 - 29421622
Alignment:
| Q |
900 |
acaatgactatgctacaca--aattcacataaagaaccgaattgattcctgattaagacactcagcatcttctttacacaaattaaattttcataaacaa |
997 |
Q |
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||||||||||||||| ||| ||||||||||||||||| |||||||||||||||||||||||| |||| |||||| ||||||||||| |||||||||||| |
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| T |
29421511 |
acaatgactatgctatacacgaattcacataaagaaccaaattgattcctgattaagacactccgcattttctttccacaaattaaactttcataaacaa |
29421610 |
T |
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| Q |
998 |
atgaacattttc |
1009 |
Q |
| |
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||| |||||||| |
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| T |
29421611 |
atggacattttc |
29421622 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 94 - 176
Target Start/End: Original strand, 29420929 - 29421006
Alignment:
| Q |
94 |
cattccatcctcttctattagtttccattccttctaatttaggataggagatatgcaatggaatgagacatcttaattaaata |
176 |
Q |
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| T |
29420929 |
cattccatcttcttcccttaatttccattccttctaatttagg-----agatatgcaatagaatgagatatcttaattaaata |
29421006 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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