View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15984_low_12 (Length: 414)
Name: NF15984_low_12
Description: NF15984
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15984_low_12 |
 | |
|
| [»] chr4 (2 HSPs) |
| |
|
| [»] scaffold0065 (1 HSPs) |
| | |
|
| [»] scaffold0671 (1 HSPs) |
| | |
|
Alignment Details
Target: chr4 (Bit Score: 296; Significance: 1e-166; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 296; E-Value: 1e-166
Query Start/End: Original strand, 17 - 414
Target Start/End: Original strand, 34455053 - 34455446
Alignment:
| Q |
17 |
cactaggaagcatggagggtagaatggtcatgtgcatcaaaccattggaggatgggtggggcagatctcttactgcccattttatatatctagttatttt |
116 |
Q |
| |
|
|||||||||||||| ||||||||||| ||||||||||||||||||||||||| |||||| || ||||||| | ||||||||||| |||||||| || |
|
|
| T |
34455053 |
cactaggaagcatgaagggtagaatgatcatgtgcatcaaaccattggaggaggggtggagcgcatctcttgcagcccattttat----ctagttatatt |
34455148 |
T |
|
| Q |
117 |
gttatgttgtaataaaaagtgaaagggtacattatttggcccaaagacacttaattaagttttccctaattttaaggtcatcttaaagcttccaagtttg |
216 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
34455149 |
gttatgttgtaataaaaagtgaaagggtacattatttggcccaaagacacttagttaagtcttccctaattttaaggtcatcttaaagcttccaaacttg |
34455248 |
T |
|
| Q |
217 |
gaatggtaaagttgtgtgtttaattattgcaaataaaggttctgaagcaaggaggaaacaaatgagtcaatggtgcaattaagatgagagaagtggcgca |
316 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34455249 |
gaatggtaaagttgtgtgtttaattattgcaaataaaggttctgaagcaaggaggaaacaaatgagtcaatggtgcaattaagatgagagaagtggcgca |
34455348 |
T |
|
| Q |
317 |
agacaagnnnnnnngcaaagaataatcagcattcaaagagctcataatgaggcaatcaagggaggattttcaacattctaacctccttcttgcctttg |
414 |
Q |
| |
|
||||||| | ||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||| |
|
|
| T |
34455349 |
agacaagaaaaaaaggaaagaataatcagcattcaaagagctcataatgaggcaatcaaggaaggattttcagcattctaacctccttcttgcctttg |
34455446 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 17 - 137
Target Start/End: Original strand, 11474975 - 11475092
Alignment:
| Q |
17 |
cactaggaagcatggagggtagaatggtcatgtgcatcaaaccattggaggatgggtggggcagatctcttactgcccattttatatatctagttatt-t |
115 |
Q |
| |
|
|||||| ||||||||||| || |||||||||||||||||||||||||||||| ||||||||| ||||||| |||||||||| ||| ||||| || | |
|
|
| T |
11474975 |
cactagaaagcatggaggataaaatggtcatgtgcatcaaaccattggaggaggggtggggcgcatctcttgctgcccattt----tatttagttgttct |
11475070 |
T |
|
| Q |
116 |
tgttatgttgtaataaaaagtg |
137 |
Q |
| |
|
|||||||||||||||||||||| |
|
|
| T |
11475071 |
tgttatgttgtaataaaaagtg |
11475092 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 61; Significance: 5e-26; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 19 - 143
Target Start/End: Complemental strand, 22708563 - 22708442
Alignment:
| Q |
19 |
ctaggaagcatggagggtagaatggtcatgtgcatcaaaccattggaggatgggtggggcagatctcttactgcccattttatatatctagtta-ttttg |
117 |
Q |
| |
|
|||| ||||||||||| || ||||||||||||||||||||||||||||||||| |||||| || |||| |||||||||| ||| |||||| ||||| |
|
|
| T |
22708563 |
ctagaaagcatggaggataaaatggtcatgtgcatcaaaccattggaggatggatggggcgcatatcttgctgcccattt----tatttagttatttttg |
22708468 |
T |
|
| Q |
118 |
ttatgttgtaataaaaagtgaaaggg |
143 |
Q |
| |
|
|||||||||||||||||||| ||||| |
|
|
| T |
22708467 |
ttatgttgtaataaaaagtgtaaggg |
22708442 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 17 - 137
Target Start/End: Original strand, 16156366 - 16156483
Alignment:
| Q |
17 |
cactaggaagcatggagggtagaatggtcatgtgcatcaaaccattggaggatgggtggggcagatctcttactgcccattttatatatctagttatt-t |
115 |
Q |
| |
|
|||||| || |||||||| || |||||||||||||||||||||||||||||| |||||||||| ||||||| |||| ||||| ||| ||||| || | |
|
|
| T |
16156366 |
cactagaaatcatggaggataaaatggtcatgtgcatcaaaccattggaggaggggtggggcacatctcttgctgctcattt----tatttagttgttct |
16156461 |
T |
|
| Q |
116 |
tgttatgttgtaataaaaagtg |
137 |
Q |
| |
|
|||||||||||||||||||||| |
|
|
| T |
16156462 |
tgttatgttgtaataaaaagtg |
16156483 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 17 - 137
Target Start/End: Complemental strand, 21369365 - 21369248
Alignment:
| Q |
17 |
cactaggaagcatggagggtagaatggtcatgtgcatcaaaccattggaggatgggtggggcagatctcttactgcccattttatatatctagttatt-t |
115 |
Q |
| |
|
|||||| ||||||||| | || |||||||||||||||||||||||||||||| ||||||||| |||| || |||||||||| ||| ||||| || | |
|
|
| T |
21369365 |
cactagaaagcatggatgataaaatggtcatgtgcatcaaaccattggaggaggggtggggcgcatctgttgctgcccattt----tatttagttgttct |
21369270 |
T |
|
| Q |
116 |
tgttatgttgtaataaaaagtg |
137 |
Q |
| |
|
|||||||||||||||||||||| |
|
|
| T |
21369269 |
tgttatgttgtaataaaaagtg |
21369248 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 61; Significance: 5e-26; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 17 - 137
Target Start/End: Complemental strand, 21302525 - 21302408
Alignment:
| Q |
17 |
cactaggaagcatggagggtagaatggtcatgtgcatcaaaccattggaggatgggtggggcagatctcttactgcccattttatatatctagttatt-t |
115 |
Q |
| |
|
|||||| ||||||||||| || |||||||||||||||||||||||||||||| ||||||||| ||||||| |||||||||| ||| ||||| || | |
|
|
| T |
21302525 |
cactagaaagcatggaggataaaatggtcatgtgcatcaaaccattggaggaggggtggggcgcatctcttgctgcccattt----tatttagttgttct |
21302430 |
T |
|
| Q |
116 |
tgttatgttgtaataaaaagtg |
137 |
Q |
| |
|
|||||||||||||||||||||| |
|
|
| T |
21302429 |
tgttatgttgtaataaaaagtg |
21302408 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 17 - 137
Target Start/End: Original strand, 12638922 - 12639039
Alignment:
| Q |
17 |
cactaggaagcatggagggtagaatggtcatgtgcatcaaaccattggaggatgggtggggcagatctcttactgcccattttatatatctagttatttt |
116 |
Q |
| |
|
|||||| ||||||||||| || |||||||||||||||||||||||||||||| ||||||||| ||||||| ||||||||||||| || | | | || |
|
|
| T |
12638922 |
cactagaaagcatggaggataaaatggtcatgtgcatcaaaccattggaggaggggtggggcgcatctcttgctgcccattttattta---attgttctt |
12639018 |
T |
|
| Q |
117 |
gttatgttgtaataaaaagtg |
137 |
Q |
| |
|
||||||||||||||||||||| |
|
|
| T |
12639019 |
gttatgttgtaataaaaagtg |
12639039 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 17 - 77
Target Start/End: Original strand, 9343779 - 9343839
Alignment:
| Q |
17 |
cactaggaagcatggagggtagaatggtcatgtgcatcaaaccattggaggatgggtgggg |
77 |
Q |
| |
|
|||||| || |||||||| || |||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
9343779 |
cactagaaaacatggaggataaaatggtcatgtgcatcaaaccattggaggaggggtgggg |
9343839 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0065 (Bit Score: 57; Significance: 1e-23; HSPs: 1)
Name: scaffold0065
Description:
Target: scaffold0065; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 17 - 137
Target Start/End: Complemental strand, 34501 - 34384
Alignment:
| Q |
17 |
cactaggaagcatggagggtagaatggtcatgtgcatcaaaccattggaggatgggtggggcagatctcttactgcccattttatatatctagttatt-t |
115 |
Q |
| |
|
|||||| ||||||||||| || |||||||||||||||||||||||||||||| ||||||||| ||||||| |||||| ||| ||| ||||| || | |
|
|
| T |
34501 |
cactagaaagcatggaggataaaatggtcatgtgcatcaaaccattggaggaggggtggggcgcatctcttgctgcccgttt----tatttagttgttct |
34406 |
T |
|
| Q |
116 |
tgttatgttgtaataaaaagtg |
137 |
Q |
| |
|
|||||||||||||||||||||| |
|
|
| T |
34405 |
tgttatgttgtaataaaaagtg |
34384 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 57; Significance: 1e-23; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 17 - 101
Target Start/End: Complemental strand, 13180634 - 13180550
Alignment:
| Q |
17 |
cactaggaagcatggagggtagaatggtcatgtgcatcaaaccattggaggatgggtggggcagatctcttactgcccattttat |
101 |
Q |
| |
|
|||||| ||||||||||| || |||||||||||||||||||||||||||||| ||||||||| ||||||| ||||||||||||| |
|
|
| T |
13180634 |
cactagaaagcatggaggataaaatggtcatgtgcatcaaaccattggaggaggggtggggcgcatctcttgctgcccattttat |
13180550 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 17 - 101
Target Start/End: Complemental strand, 13185168 - 13185084
Alignment:
| Q |
17 |
cactaggaagcatggagggtagaatggtcatgtgcatcaaaccattggaggatgggtggggcagatctcttactgcccattttat |
101 |
Q |
| |
|
|||||| ||||||||||| || |||||||||||||||||||||||||||||| ||||||||| ||||||| ||||||||||||| |
|
|
| T |
13185168 |
cactagaaagcatggaggataaaatggtcatgtgcatcaaaccattggaggaggggtggggcgcatctcttgctgcccattttat |
13185084 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 24 - 101
Target Start/End: Complemental strand, 33758705 - 33758628
Alignment:
| Q |
24 |
aagcatggagggtagaatggtcatgtgcatcaaaccattggaggatgggtggggcagatctcttactgcccattttat |
101 |
Q |
| |
|
||||||||||| || |||||||||||||||||||||||||||||| ||||||||| ||||||| ||| ||||||||| |
|
|
| T |
33758705 |
aagcatggaggataaaatggtcatgtgcatcaaaccattggaggaggggtggggcgcatctcttgctgtccattttat |
33758628 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 57; Significance: 1e-23; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 17 - 101
Target Start/End: Original strand, 37259739 - 37259823
Alignment:
| Q |
17 |
cactaggaagcatggagggtagaatggtcatgtgcatcaaaccattggaggatgggtggggcagatctcttactgcccattttat |
101 |
Q |
| |
|
|||||| ||||||||||| || |||||||||||||||||||||||||||||| ||||||||| ||||||| ||||||||||||| |
|
|
| T |
37259739 |
cactagaaagcatggaggataaaatggtcatgtgcatcaaaccattggaggaggggtggggcgcatctcttgctgcccattttat |
37259823 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 54; Significance: 7e-22; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 17 - 137
Target Start/End: Complemental strand, 18775048 - 18774931
Alignment:
| Q |
17 |
cactaggaagcatggagggtagaatggtcatgtgcatcaaaccattggaggatgggtggggcagatctcttactgcccattttatatatctagttatttt |
116 |
Q |
| |
|
|||||| ||||||||||| || |||||||||||||||||||||| ||||||| ||||||||| ||||||| ||||||||||||| || | || | || |
|
|
| T |
18775048 |
cactagaaagcatggaggataaaatggtcatgtgcatcaaaccaatggaggaggggtggggcgcatctcttgctgcccattttatttagat-gt--tctt |
18774952 |
T |
|
| Q |
117 |
gttatgttgtaataaaaagtg |
137 |
Q |
| |
|
||||||||||||||||||||| |
|
|
| T |
18774951 |
gttatgttgtaataaaaagtg |
18774931 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 28 - 137
Target Start/End: Complemental strand, 17465499 - 17465393
Alignment:
| Q |
28 |
atggagggtagaatggtcatgtgcatcaaaccattggaggatgggtggggcagatctcttactgcccattttatatatctagttatt-ttgttatgttgt |
126 |
Q |
| |
|
||||||| || |||||||||||||||||||||||||||||| ||||||||| ||||||| |||||||||| | | ||||| || |||||||||||| |
|
|
| T |
17465499 |
atggaggataaaatggtcatgtgcatcaaaccattggaggaggggtggggcgcatctcttgctgcccattt----tgtttagttgttcttgttatgttgt |
17465404 |
T |
|
| Q |
127 |
aataaaaagtg |
137 |
Q |
| |
|
||||||||||| |
|
|
| T |
17465403 |
aataaaaagtg |
17465393 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 17 - 68
Target Start/End: Complemental strand, 18783998 - 18783947
Alignment:
| Q |
17 |
cactaggaagcatggagggtagaatggtcatgtgcatcaaaccattggagga |
68 |
Q |
| |
|
|||||| ||||||||||| || |||||||||||||||||||||||||||||| |
|
|
| T |
18783998 |
cactagaaagcatggaggataaaatggtcatgtgcatcaaaccattggagga |
18783947 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 49; Significance: 7e-19; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 17 - 137
Target Start/End: Complemental strand, 22822041 - 22821924
Alignment:
| Q |
17 |
cactaggaagcatggagggtagaatggtcatgtgcatcaaaccattggaggatgggtggggcagatctcttactgcccattttatatatctagttatt-t |
115 |
Q |
| |
|
|||||| |||||| |||| || |||||||||||||||||||||||||||||| | || |||| ||||||| |||||||||| ||| ||||| || | |
|
|
| T |
22822041 |
cactagaaagcattgaggataaaatggtcatgtgcatcaaaccattggaggaggtgtagggcgcatctcttgctgcccattt----tatttagttgttct |
22821946 |
T |
|
| Q |
116 |
tgttatgttgtaataaaaagtg |
137 |
Q |
| |
|
|||||||||||||||||||||| |
|
|
| T |
22821945 |
tgttatgttgtaataaaaagtg |
22821924 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 17 - 101
Target Start/End: Complemental strand, 22825775 - 22825691
Alignment:
| Q |
17 |
cactaggaagcatggagggtagaatggtcatgtgcatcaaaccattggaggatgggtggggcagatctcttactgcccattttat |
101 |
Q |
| |
|
|||||| |||||| |||| || ||||||||||||||||||||||||| |||| |||||||| ||||||| ||||||||||||| |
|
|
| T |
22825775 |
cactagaaagcattgaggataaaatggtcatgtgcatcaaaccattgaaggaggggtggggtgcatctcttgctgcccattttat |
22825691 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0671 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: scaffold0671
Description:
Target: scaffold0671; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 17 - 68
Target Start/End: Original strand, 1347 - 1398
Alignment:
| Q |
17 |
cactaggaagcatggagggtagaatggtcatgtgcatcaaaccattggagga |
68 |
Q |
| |
|
|||||| ||||||||||| || |||||||||||||||||||||||||||||| |
|
|
| T |
1347 |
cactagaaagcatggaggataaaatggtcatgtgcatcaaaccattggagga |
1398 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University