View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15984_low_14 (Length: 383)
Name: NF15984_low_14
Description: NF15984
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15984_low_14 |
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Alignment Details
Target: chr3 (Bit Score: 309; Significance: 1e-174; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 309; E-Value: 1e-174
Query Start/End: Original strand, 18 - 376
Target Start/End: Original strand, 38585159 - 38585514
Alignment:
| Q |
18 |
gagagaggaagatgatgaagaaaatagaaagaagattcgagaaactttttgaaatcaccatggtggatcagtggttgaacacgagagtaacaaactcaaa |
117 |
Q |
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| T |
38585159 |
gagagaggaagatgatgaagaaaatagaaagaagattcgagaagctttttgaaatcaccatggtggatcagtggttgaacacgagagttacaaactcaaa |
38585258 |
T |
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| Q |
118 |
gaaaaagatggagagaagagaactctgttaactaatttgttagaaaattttgaatggaaaaaagtaatgtggcgggagagaatgaaaagtgtgagctaag |
217 |
Q |
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| T |
38585259 |
gaaaaaggtggagagaagagaactctgttaactaatttgttagaaaattttgaatggaaaaaagtaatgtggcgggagagaatgaaaagtgtgagctaag |
38585358 |
T |
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| Q |
218 |
gtgtgtttgatatttataggctgaagaagagtgaagggtgatcacaaagatgcaccactacacgcgctggaactgcttccgttacggtgctgaaagttta |
317 |
Q |
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| T |
38585359 |
gtgtgtgtgatatttataggct---gaagagtgaagggtgatcacaaagatgcaccactacacgcgctggaactgcttccgttacggtgctgaaagttta |
38585455 |
T |
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| Q |
318 |
ttcagatactgtttactttttaaatttgaaaattaaatatgccgtttgatttgatgatg |
376 |
Q |
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| T |
38585456 |
tttagatactgttaaatttttaaatttgaaagttaaatatgccgtttgatttgacgatg |
38585514 |
T |
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