View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15984_low_15 (Length: 363)

Name: NF15984_low_15
Description: NF15984
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15984_low_15
NF15984_low_15
[»] chr7 (37 HSPs)
chr7 (141-344)||(12840618-12840822)
chr7 (138-276)||(422704-422842)
chr7 (146-279)||(28359003-28359137)
chr7 (146-277)||(23721065-23721196)
chr7 (148-286)||(39079682-39079821)
chr7 (146-278)||(41709939-41710071)
chr7 (138-262)||(30610852-30610973)
chr7 (1-72)||(12839957-12840028)
chr7 (168-267)||(41387462-41387561)
chr7 (144-286)||(41389219-41389361)
chr7 (157-267)||(12305118-12305228)
chr7 (138-279)||(16015452-16015593)
chr7 (138-266)||(16015763-16015891)
chr7 (148-267)||(39079994-39080113)
chr7 (157-277)||(3973082-3973202)
chr7 (144-274)||(46870238-46870369)
chr7 (138-276)||(14596235-14596373)
chr7 (138-244)||(32000772-32000878)
chr7 (169-267)||(46753059-46753157)
chr7 (138-279)||(14595924-14596065)
chr7 (138-279)||(25589114-25589254)
chr7 (182-265)||(1663692-1663774)
chr7 (182-244)||(257354-257416)
chr7 (146-244)||(10406637-10406735)
chr7 (182-264)||(28909967-28910049)
chr7 (167-231)||(14092255-14092319)
chr7 (167-231)||(14402273-14402337)
chr7 (208-279)||(30899093-30899164)
chr7 (189-244)||(43167987-43168042)
chr7 (182-244)||(1661278-1661340)
chr7 (182-232)||(40121705-40121755)
chr7 (182-244)||(41670823-41670885)
chr7 (189-262)||(10193470-10193543)
chr7 (208-244)||(14092014-14092050)
chr7 (208-244)||(14402032-14402068)
chr7 (148-224)||(21033884-21033960)
chr7 (204-244)||(41670539-41670579)
[»] chr5 (24 HSPs)
chr5 (146-279)||(4796278-4796411)
chr5 (138-279)||(31973477-31973618)
chr5 (138-277)||(16275164-16275302)
chr5 (180-279)||(31973210-31973309)
chr5 (168-265)||(15844297-15844394)
chr5 (175-274)||(28362467-28362566)
chr5 (146-229)||(30587837-30587920)
chr5 (182-264)||(873783-873865)
chr5 (210-264)||(17435353-17435407)
chr5 (182-264)||(28010203-28010285)
chr5 (148-249)||(904806-904907)
chr5 (210-265)||(20319056-20319110)
chr5 (182-244)||(27760346-27760408)
chr5 (182-264)||(37995721-37995803)
chr5 (183-256)||(24918107-24918180)
chr5 (183-264)||(24994007-24994088)
chr5 (182-241)||(1028180-1028239)
chr5 (182-232)||(13843664-13843714)
chr5 (182-232)||(13843980-13844030)
chr5 (182-232)||(17016180-17016230)
chr5 (182-244)||(27760030-27760092)
chr5 (146-248)||(33105529-33105631)
chr5 (184-232)||(20811421-20811469)
chr5 (139-187)||(38603955-38604003)
[»] chr8 (20 HSPs)
chr8 (144-277)||(38887023-38887156)
chr8 (138-257)||(30590390-30590509)
chr8 (146-279)||(39590619-39590750)
chr8 (148-255)||(26642531-26642638)
chr8 (139-277)||(34529909-34530047)
chr8 (148-267)||(26639043-26639162)
chr8 (169-277)||(28488406-28488514)
chr8 (168-264)||(44933154-44933250)
chr8 (168-277)||(25971348-25971457)
chr8 (182-264)||(23027592-23027674)
chr8 (182-264)||(23027915-23027997)
chr8 (182-264)||(31766936-31767018)
chr8 (204-264)||(3184012-3184072)
chr8 (181-244)||(20298602-20298665)
chr8 (182-244)||(21085235-21085297)
chr8 (167-279)||(15157002-15157114)
chr8 (149-224)||(16213190-16213265)
chr8 (148-224)||(30602874-30602948)
chr8 (180-232)||(36997133-36997185)
chr8 (204-244)||(40754399-40754439)
[»] chr1 (36 HSPs)
chr1 (144-275)||(41590278-41590407)
chr1 (138-279)||(34626817-34626958)
chr1 (144-279)||(18998631-18998766)
chr1 (139-277)||(19810742-19810879)
chr1 (146-286)||(7907895-7908036)
chr1 (150-277)||(51515636-51515764)
chr1 (139-278)||(19811055-19811194)
chr1 (150-267)||(6868065-6868182)
chr1 (139-279)||(33248369-33248514)
chr1 (139-279)||(33268541-33268686)
chr1 (146-277)||(12581394-12581526)
chr1 (152-263)||(40566323-40566434)
chr1 (168-274)||(13978510-13978616)
chr1 (167-229)||(51188886-51188948)
chr1 (182-264)||(33879865-33879947)
chr1 (182-264)||(33964308-33964390)
chr1 (208-277)||(14623129-14623198)
chr1 (176-262)||(19459660-19459746)
chr1 (138-277)||(12410327-12410467)
chr1 (184-264)||(45264598-45264678)
chr1 (138-193)||(19810001-19810056)
chr1 (182-264)||(2697418-2697500)
chr1 (182-264)||(4022212-4022294)
chr1 (144-222)||(18998370-18998448)
chr1 (182-240)||(19937130-19937188)
chr1 (182-244)||(31305666-31305728)
chr1 (168-226)||(41590605-41590663)
chr1 (168-277)||(5087831-5087940)
chr1 (182-244)||(8520180-8520242)
chr1 (224-266)||(11636199-11636241)
chr1 (139-263)||(17557767-17557890)
chr1 (182-244)||(20735477-20735539)
chr1 (150-267)||(8000443-8000565)
chr1 (204-244)||(8520344-8520384)
chr1 (204-244)||(15013480-15013520)
chr1 (204-244)||(35926330-35926370)
[»] chr4 (31 HSPs)
chr4 (144-278)||(52043127-52043261)
chr4 (139-279)||(26942916-26943055)
chr4 (147-286)||(48046269-48046409)
chr4 (189-279)||(26942681-26942771)
chr4 (147-278)||(30491006-30491134)
chr4 (196-277)||(26942473-26942554)
chr4 (144-272)||(46332587-46332710)
chr4 (167-277)||(22870575-22870685)
chr4 (182-264)||(53738295-53738377)
chr4 (172-269)||(3137021-3137118)
chr4 (146-255)||(23311521-23311629)
chr4 (179-276)||(54595145-54595242)
chr4 (217-279)||(3137285-3137347)
chr4 (182-264)||(15665087-15665170)
chr4 (182-265)||(29669765-29669847)
chr4 (182-265)||(36558553-36558636)
chr4 (182-264)||(43972290-43972372)
chr4 (182-244)||(45427339-45427401)
chr4 (167-276)||(3137706-3137814)
chr4 (208-256)||(44898835-44898883)
chr4 (182-265)||(991138-991221)
chr4 (182-265)||(29669450-29669532)
chr4 (145-276)||(54595427-54595558)
chr4 (189-260)||(56509548-56509619)
chr4 (182-232)||(50857979-50858029)
chr4 (182-232)||(50858295-50858345)
chr4 (182-232)||(53740149-53740199)
chr4 (190-243)||(45427031-45427084)
chr4 (204-265)||(49544267-49544328)
chr4 (184-244)||(43971994-43972054)
chr4 (180-232)||(52214582-52214634)
[»] chr3 (22 HSPs)
chr3 (144-275)||(34250401-34250532)
chr3 (144-279)||(51917800-51917935)
chr3 (151-279)||(662646-662774)
chr3 (144-278)||(54861446-54861580)
chr3 (167-274)||(39225097-39225208)
chr3 (138-277)||(25568419-25568558)
chr3 (138-276)||(35035023-35035161)
chr3 (146-277)||(351102-351236)
chr3 (182-279)||(14170086-14170184)
chr3 (189-264)||(24860154-24860229)
chr3 (138-232)||(45016876-45016970)
chr3 (180-244)||(13769376-13769440)
chr3 (180-244)||(45443235-45443299)
chr3 (182-265)||(41380658-41380741)
chr3 (180-255)||(46139176-46139251)
chr3 (182-244)||(43101458-43101520)
chr3 (182-244)||(54368994-54369056)
chr3 (189-244)||(50203951-50204006)
chr3 (182-260)||(3985712-3985790)
chr3 (182-232)||(4255477-4255527)
chr3 (182-244)||(4256189-4256251)
chr3 (182-232)||(44573293-44573343)
[»] chr2 (26 HSPs)
chr2 (138-273)||(18183392-18183527)
chr2 (148-286)||(26760879-26761018)
chr2 (146-267)||(21373915-21374045)
chr2 (168-276)||(43203479-43203588)
chr2 (166-277)||(1544073-1544185)
chr2 (144-229)||(14407958-14408044)
chr2 (144-277)||(5511851-5511983)
chr2 (177-277)||(9889407-9889508)
chr2 (138-267)||(39583432-39583561)
chr2 (182-265)||(15820188-15820271)
chr2 (175-266)||(33070355-33070446)
chr2 (182-264)||(5424843-5424925)
chr2 (170-232)||(11339771-11339833)
chr2 (204-264)||(43688531-43688591)
chr2 (169-232)||(3003981-3004044)
chr2 (237-276)||(26580192-26580231)
chr2 (182-244)||(18901951-18902013)
chr2 (167-267)||(14522432-14522532)
chr2 (180-232)||(21213970-21214022)
chr2 (189-244)||(7877799-7877854)
chr2 (190-265)||(17509043-17509118)
chr2 (182-232)||(3976558-3976608)
chr2 (182-232)||(43169209-43169259)
chr2 (203-276)||(45636302-45636376)
chr2 (182-267)||(20135069-20135153)
chr2 (172-224)||(35872850-35872902)
[»] chr6 (21 HSPs)
chr6 (167-279)||(1205936-1206048)
chr6 (144-267)||(18286817-18286940)
chr6 (147-267)||(9237091-9237214)
chr6 (189-278)||(9602081-9602170)
chr6 (189-277)||(31967-32055)
chr6 (148-244)||(9156154-9156250)
chr6 (196-277)||(1205651-1205732)
chr6 (138-223)||(1206222-1206307)
chr6 (188-279)||(130760-130853)
chr6 (196-279)||(9216755-9216838)
chr6 (168-239)||(12308564-12308635)
chr6 (182-244)||(10418425-10418487)
chr6 (182-264)||(12134570-12134652)
chr6 (147-276)||(16509699-16509829)
chr6 (182-244)||(24055196-24055258)
chr6 (182-243)||(1408967-1409028)
chr6 (189-254)||(32215853-32215918)
chr6 (182-265)||(19054427-19054510)
chr6 (170-231)||(5854929-5854990)
chr6 (180-244)||(1744927-1744991)
chr6 (180-232)||(10733523-10733575)


Alignment Details
Target: chr7 (Bit Score: 177; Significance: 2e-95; HSPs: 37)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 177; E-Value: 2e-95
Query Start/End: Original strand, 141 - 344
Target Start/End: Original strand, 12840618 - 12840822
Alignment:
Q  141 ccaaagctttataaacactacacaaaccatatctctaggcaatgtggaactaaagccaccctttcaaacccaacacaatgaaggtgttggagaatgcaat 240  Q
    ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  12840618 ccaaagctttataaacactacacaagccatatctctaggcaatgtggaactaaagccaccctttcaaacccaacacaacgaaggtgttggagaatgcaat 12840717  T
Q  241 gaagacaacccaaatgccgcaattaggaggctaggggc-gaccgcaaagagtggggaatttcaaacgtaaagaaatggatagagagcaaaaactgacatt 339  Q
    ||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||    
T  12840718 gaaaacaacccaaatgccgcaattaggaggctaggggcggaccgcaaagagtggggaatttctaacgtgaagaaatggatagagagcaaaaactgacatt 12840817  T
Q  340 ggaaa 344  Q
    |||||    
T  12840818 ggaaa 12840822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 138 - 276
Target Start/End: Original strand, 422704 - 422842
Alignment:
Q  138 ctgccaaagctttataaacactacacaaaccatatctctaggcaatgtggaactaaagccaccctttcaaacccaacacaatgaaggtgttggagaatgc 237  Q
    ||||| ||||||||||| |||| || |  ||||||||||||||||||||| | ||||| ||||| |||| ||||||||||||||||||||||||   |||    
T  422704 ctgcccaagctttataatcactgcataggccatatctctaggcaatgtgggattaaagtcaccccttcacacccaacacaatgaaggtgttggaagctgc 422803  T
Q  238 aatgaagacaacccaaatgccgcaattaggaggctaggg 276  Q
    |||| || ||||||||||||||| ||||||  |||||||    
T  422804 aatggaggcaacccaaatgccgcgattaggctgctaggg 422842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 146 - 279
Target Start/End: Complemental strand, 28359137 - 28359003
Alignment:
Q  146 gctttataaacactacacaaaccatatctctaggcaatgtggaactaaagccaccc-tttcaaacccaacacaatgaaggtgttggagaatgcaatgaag 244  Q
    |||||||||||||||||||  | ||||||||||||||||||| ||| || |||||| ||||| |||||| | ||||||||||||||||  ||||||||||    
T  28359137 gctttataaacactacacaggctatatctctaggcaatgtgggactgaatccacccatttcacacccaaaataatgaaggtgttggaggctgcaatgaag 28359038  T
Q  245 acaacccaaatgccgcaattaggaggctaggggcg 279  Q
      ||||||||||||||||||||  | |||||||||    
T  28359037 gaaacccaaatgccgcaattagatgactaggggcg 28359003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 146 - 277
Target Start/End: Complemental strand, 23721196 - 23721065
Alignment:
Q  146 gctttataaacactacacaaaccatatctctaggcaatgtggaactaaagccaccctttcaaacccaacacaatgaaggtgttggagaatgcaatgaaga 245  Q
    ||||||||||||||||| |  |||||| ||||  ||||| || |||||| |||||| |||||  |||||||||||| | ||||||||  ||||||||||     
T  23721196 gctttataaacactacataggccatatttctaaacaatgagggactaaacccaccccttcaagtccaacacaatgatgttgttggaggctgcaatgaagg 23721097  T
Q  246 caacccaaatgccgcaattaggaggctagggg 277  Q
    |||||||||||||||||||||| |||||||||    
T  23721096 caacccaaatgccgcaattaggtggctagggg 23721065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 148 - 286
Target Start/End: Original strand, 39079682 - 39079821
Alignment:
Q  148 tttataaacactacacaaaccatatctctaggcaatgtggaactaaagccaccctttcaaacccaacacaatgaaggtgttggagaatgcaatgaagaca 247  Q
    |||||||||||| ||||  ||||||||||||||| ||   | ||||| |||||| |||| |||||||||||||||||||||||||  ||  |||||||||    
T  39079682 tttataaacactgcacatgccatatctctaggcattgattatctaaatccaccccttcacacccaacacaatgaaggtgttggaggctgtgatgaagaca 39079781  T
Q  248 acccaaatgccgcaattaggaggctaggggc-gaccgcaa 286  Q
    || ||||||||||||||||  |||||||||| ||||||||    
T  39079782 actcaaatgccgcaattagatggctaggggcagaccgcaa 39079821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 146 - 278
Target Start/End: Complemental strand, 41710071 - 41709939
Alignment:
Q  146 gctttataaacactacacaaaccatatctctaggcaatgtggaactaaagccaccctttcaaacccaacacaatgaaggtgttggagaatgcaatgaaga 245  Q
    ||||||||||||||| |||  |||||| |||| || |  ||| |||||| ||||||  ||||| |||||||||||||||||||||||  |||||||||||    
T  41710071 gctttataaacactagacaggccatatgtctaagcgacatgggactaaatccaccccctcaaagccaacacaatgaaggtgttggaggttgcaatgaaga 41709972  T
Q  246 caacccaaatgccgcaattaggaggctaggggc 278  Q
    ||||| |||||| ||||||||| | ||||||||    
T  41709971 caacctaaatgctgcaattaggcgactaggggc 41709939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 138 - 262
Target Start/End: Original strand, 30610852 - 30610973
Alignment:
Q  138 ctgccaaagctttataaacactacacaaaccatatctctaggcaatgtggaactaaagccaccctttcaaacccaacacaatgaaggtgttggagaatgc 237  Q
    ||||| |||||||||||||||||   |  ||||||||||||||||||||  | |||| |||||| |||  |||||||||||||||||||||||||  |||    
T  30610852 ctgcccaagctttataaacacta---aggccatatctctaggcaatgtgagattaaatccaccccttcccacccaacacaatgaaggtgttggaggctgc 30610948  T
Q  238 aatgaagacaacccaaatgccgcaa 262  Q
    ||||||| |||||||||||| ||||    
T  30610949 aatgaaggcaacccaaatgctgcaa 30610973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 1 - 72
Target Start/End: Original strand, 12839957 - 12840028
Alignment:
Q  1 aatggtttttagttatagctgtgatattttaattgtcgtgtagtgtcatgaaccaaatattccaaagatata 72  Q
    ||||||||||| |||||||||||||||||||| ||||| ||| ||||||||||||||||||||||| |||||    
T  12839957 aatggtttttaattatagctgtgatattttaagtgtcgcgtactgtcatgaaccaaatattccaaaaatata 12840028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 168 - 267
Target Start/End: Complemental strand, 41387561 - 41387462
Alignment:
Q  168 catatctctaggcaatgtggaactaaagccaccctttcaaacccaacacaatgaaggtgttggagaatgcaatgaagacaacccaaatgccgcaattagg 267  Q
    ||||| || ||||||||||| |||||| |||||| |||| ||| |||||||||||||||||||||  |||||||||| ||||||||||| | ||||||||    
T  41387561 catatgtcaaggcaatgtgggactaaacccaccccttcatacctaacacaatgaaggtgttggaggttgcaatgaaggcaacccaaatgtcacaattagg 41387462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 144 - 286
Target Start/End: Complemental strand, 41389361 - 41389219
Alignment:
Q  144 aagctttataaacactacacaaaccatatctctaggcaatgtggaactaaagccaccctttcaaacccaacacaatgaaggtgttggagaatgcaatgaa 243  Q
    |||||||||||| ||||||||  | ||||||||| ||||||||| |||||| |||||| |||| ||| ||||||||||||||||||  |  |||||||||    
T  41389361 aagctttataaatactacacaggctatatctctaagcaatgtgggactaaatccaccccttcacacctaacacaatgaaggtgttgatggctgcaatgaa 41389262  T
Q  244 gacaacccaaatgccgcaattaggaggctaggggc-gaccgcaa 286  Q
    |||||  |||| |||||||||||  ||||| |||| ||||||||    
T  41389261 gacaa-tcaaaggccgcaattagtcggctacgggcagaccgcaa 41389219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 157 - 267
Target Start/End: Original strand, 12305118 - 12305228
Alignment:
Q  157 actacacaaaccatatctctaggcaatgtggaactaaagccaccctttcaaacccaacacaatgaaggtgttggagaatgcaatgaagacaacccaaatg 256  Q
    ||||||| | ||||||||||| ||||| ||| |||||| ||| ||||| |||||||||||||||||||||||| ||  |||||  ||| || ||||||||    
T  12305118 actacaccagccatatctctaagcaatatgggactaaatccatccttttaaacccaacacaatgaaggtgttgaaggctgcaaataagtcagcccaaatg 12305217  T
Q  257 ccgcaattagg 267  Q
    |||||||||||    
T  12305218 ccgcaattagg 12305228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 138 - 279
Target Start/End: Original strand, 16015452 - 16015593
Alignment:
Q  138 ctgccaaagctttataaacactacacaaaccatatctctaggcaatgtggaactaaagccaccctttcaaacccaacacaatgaaggtgttggagaatgc 237  Q
    ||||| || ||||||||||||||||||  |||||||||||||||| |||| |||||| |||||| |||| |  ||||||||||||| | ||||||   |     
T  16015452 ctgcccaaactttataaacactacacatgccatatctctaggcaacgtgggactaaatccaccccttcacagtcaacacaatgaagattttggaggtgga 16015551  T
Q  238 aatgaagacaacccaaatgccgcaattaggaggctaggggcg 279  Q
    ||||||| ||  || ||| ||||||||||| |||||||||||    
T  16015552 aatgaaggcattcctaattccgcaattaggtggctaggggcg 16015593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 138 - 266
Target Start/End: Original strand, 16015763 - 16015891
Alignment:
Q  138 ctgccaaagctttataaacactacacaaaccatatctctaggcaatgtggaactaaagccaccctttcaaacccaacacaatgaaggtgttggagaatgc 237  Q
    ||||| ||||||| ||||||||||  || ||||||||||||||||||||| | |||| |  ||| |||| ||| ||||| |||||  ||||||||  |||    
T  16015763 ctgcccaagctttctaaacactacgaaagccatatctctaggcaatgtgggaataaatctgcccattcacaccgaacacgatgaaaatgttggaggctgc 16015862  T
Q  238 aatgaagacaacccaaatgccgcaattag 266  Q
    |||||||  ||||||||||||||||||||    
T  16015863 aatgaaggtaacccaaatgccgcaattag 16015891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 148 - 267
Target Start/End: Original strand, 39079994 - 39080113
Alignment:
Q  148 tttataaacactacacaaaccatatctctaggcaatgtggaactaaagccaccctttcaaacccaacacaatgaaggtgttggagaatgcaatgaagaca 247  Q
    |||||||||||||||||   |||||||||||||||||||  | |||| |||||| | || |||| | ||||||| ||||||||||  || || |||| ||    
T  39079994 tttataaacactacacatgtcatatctctaggcaatgtgagattaaatccacccctccacacccgatacaatgagggtgttggaggctggaacgaaggca 39080093  T
Q  248 acccaaatgccgcaattagg 267  Q
    ||||||||||||||||||||    
T  39080094 acccaaatgccgcaattagg 39080113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 157 - 277
Target Start/End: Complemental strand, 3973202 - 3973082
Alignment:
Q  157 actacacaaaccatatctctaggcaatgtggaactaaagccaccctttcaaacccaacacaatgaaggtgttggagaatgcaatgaagacaacccaaatg 256  Q
    |||||||| |||||||||| | |||  |||| |  ||| ||||||  ||||||||||||| |||||||||||| ||  |||||||||| |||||||||||    
T  3973202 actacacacaccatatctccaagcaccgtgggaaaaaatccaccccctcaaacccaacacgatgaaggtgttgaaggctgcaatgaaggcaacccaaatg 3973103  T
Q  257 ccgcaattaggaggctagggg 277  Q
      ||||||||| |||||||||    
T  3973102 ttgcaattaggcggctagggg 3973082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 144 - 274
Target Start/End: Complemental strand, 46870369 - 46870238
Alignment:
Q  144 aagctttataaacactacacaaaccatatctctaggcaatgtggaactaaagcca-ccctttcaaacccaacacaatgaaggtgttggagaatgcaatga 242  Q
    |||||||||||| ||||||||  ||||||| ||||||||||||| |||||| ||| ||| |||| |||| | |||||||| |||||||||  ||||| ||    
T  46870369 aagctttataaatactacacatgccatatccctaggcaatgtgggactaaatccacccccttcacaccctaaacaatgaaagtgttggaggctgcaaaga 46870270  T
Q  243 agacaacccaaatgccgcaattaggaggctag 274  Q
     | || ||||||||||| ||||| | ||||||    
T  46870269 tggcagcccaaatgccgtaattatgcggctag 46870238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 138 - 276
Target Start/End: Original strand, 14596235 - 14596373
Alignment:
Q  138 ctgccaaagctttataaacactacacaaaccatatctctaggcaatgtggaactaaagccaccctttcaaacccaacacaatgaaggtgttggagaatgc 237  Q
    ||||| ||||||| ||||||||||  || || |||||||||||||||||| | |||| |  ||| |||| ||| ||||| |||||  ||||||||   ||    
T  14596235 ctgcccaagctttctaaacactacgaaagccttatctctaggcaatgtgggaataaatctgcccattcacaccgaacacgatgaaaatgttggaggcagc 14596334  T
Q  238 aatgaagacaacccaaatgccgcaattaggaggctaggg 276  Q
    |||||||  ||||||||||||||||||||  ||||||||    
T  14596335 aatgaaggtaacccaaatgccgcaattagacggctaggg 14596373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 138 - 244
Target Start/End: Complemental strand, 32000878 - 32000772
Alignment:
Q  138 ctgccaaagctttataaacactacacaaaccatatctctaggcaatgtggaactaaagccaccctttcaaacccaacacaatgaaggtgttggagaatgc 237  Q
    ||||| |||||||||||||||||||||   |||||||||| ||| ||||| |||||| ||| ||  ||||| ||||||| |||||||||||| ||  |||    
T  32000878 ctgcccaagctttataaacactacacaggacatatctctaagcattgtgggactaaatccatcccctcaaagccaacaccatgaaggtgttgaaggctgc 32000779  T
Q  238 aatgaag 244  Q
    |||||||    
T  32000778 aatgaag 32000772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 169 - 267
Target Start/End: Complemental strand, 46753157 - 46753059
Alignment:
Q  169 atatctctaggcaatgtggaactaaagccaccctttcaaacccaacacaatgaaggtgttggagaatgcaatgaagacaacccaaatgccgcaattagg 267  Q
    ||||||||||||||||| | |||||| | |||| |||| ||||||||||| |||  ||||||||  ||| |||||| |||||||||||| |||||||||    
T  46753157 atatctctaggcaatgttggactaaatctaccccttcacacccaacacaaggaacatgttggaggctgcgatgaaggcaacccaaatgcagcaattagg 46753059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 138 - 279
Target Start/End: Original strand, 14595924 - 14596065
Alignment:
Q  138 ctgccaaagctttataaacactacacaaaccatatctctaggcaatgtggaactaaagccaccctttcaaacccaacacaatgaaggtgttggagaatgc 237  Q
    ||||| || ||||||||||||||||||  |||||||||||||||| ||||  ||||| |||||| |||| |  ||||||||||||| | ||||||   |     
T  14595924 ctgcccaaactttataaacactacacatgccatatctctaggcaacgtggggctaaatccaccccttcacagtcaacacaatgaagattttggaggtgga 14596023  T
Q  238 aatgaagacaacccaaatgccgcaattaggaggctaggggcg 279  Q
    ||||||| ||  || ||| ||||||||||| |||| ||||||    
T  14596024 aatgaaggcattcctaattccgcaattaggtggctgggggcg 14596065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 138 - 279
Target Start/End: Original strand, 25589114 - 25589254
Alignment:
Q  138 ctgccaaagctttataaacactacacaaaccatatctctaggcaatgtggaactaaagccaccctttcaaacccaacacaatgaaggtgttggagaatgc 237  Q
    ||||| ||| |||||||||||||||||  |||||| || | ||||||||| ||||||  ||||| |||| |||||||||| ||| | ||||||||  ||     
T  25589114 ctgcccaagttttataaacactacacatgccatatatccaagcaatgtgg-actaaattcaccccttcacacccaacacagtgaggatgttggaggctga 25589212  T
Q  238 aatgaagacaacccaaatgccgcaattaggaggctaggggcg 279  Q
    | ||||| |||||||||||| || | ||||  ||||||||||    
T  25589213 agtgaaggcaacccaaatgctgctaataggcagctaggggcg 25589254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 182 - 265
Target Start/End: Original strand, 1663692 - 1663774
Alignment:
Q  182 atgtggaactaaagccaccctttcaaacccaacacaatgaaggtgttggagaatgcaatgaagacaacccaaatgccgcaatta 265  Q
    |||||| |||||| |||||| | |||| |||||||||||||||||||||||  |||||||||| | | ||||| ||||||||||    
T  1663692 atgtgggactaaatccacccct-caaagccaacacaatgaaggtgttggaggctgcaatgaaggctaaccaaaggccgcaatta 1663774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 182 - 244
Target Start/End: Original strand, 257354 - 257416
Alignment:
Q  182 atgtggaactaaagccaccctttcaaacccaacacaatgaaggtgttggagaatgcaatgaag 244  Q
    |||||| |||||| ||||||  ||||| |||||||||||||||||||||||  ||||||||||    
T  257354 atgtgggactaaatccaccccctcaaagccaacacaatgaaggtgttggaggctgcaatgaag 257416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 146 - 244
Target Start/End: Original strand, 10406637 - 10406735
Alignment:
Q  146 gctttataaacactacacaaaccatatctctaggcaatgtggaactaaagccaccctttcaaacccaacacaatgaaggtgttggagaatgcaatgaag 244  Q
    |||||||||||||||||||  ||||||||||| |  |||||  |||||| |||||   ||||| |||||||| |||| |||||||||  ||||||||||    
T  10406637 gctttataaacactacacaggccatatctctaagagatgtgagactaaacccaccgcctcaaagccaacacagtgaaagtgttggaggctgcaatgaag 10406735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 182 - 264
Target Start/End: Complemental strand, 28910049 - 28909967
Alignment:
Q  182 atgtggaactaaagccaccctttcaaacccaacacaatgaaggtgttggagaatgcaatgaagacaacccaaatgccgcaatt 264  Q
    |||||| |||||| ||||||  ||||| |||||||||||||||||||||||  |||||||||  ||| ||||| | |||||||    
T  28910049 atgtgggactaaatccaccccctcaaagccaacacaatgaaggtgttggaggctgcaatgaaagcaaaccaaagggcgcaatt 28909967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 167 - 231
Target Start/End: Original strand, 14092255 - 14092319
Alignment:
Q  167 ccatatctctaggcaatgtggaactaaagccaccctttcaaacccaacacaatgaaggtgttgga 231  Q
    ||||||||||||||||||||| |||||| ||||||  ||| | ||| ||||||||||||| ||||    
T  14092255 ccatatctctaggcaatgtgggactaaacccaccccctcacatccagcacaatgaaggtgatgga 14092319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 167 - 231
Target Start/End: Original strand, 14402273 - 14402337
Alignment:
Q  167 ccatatctctaggcaatgtggaactaaagccaccctttcaaacccaacacaatgaaggtgttgga 231  Q
    ||||||||||||||||||||| |||||| ||||||  ||| | ||| ||||||||||||| ||||    
T  14402273 ccatatctctaggcaatgtgggactaaacccaccccctcacatccagcacaatgaaggtgatgga 14402337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 208 - 279
Target Start/End: Original strand, 30899093 - 30899164
Alignment:
Q  208 acccaacacaatgaaggtgttggagaatgcaatgaagacaacccaaatgccgcaattaggaggctaggggcg 279  Q
    |||||||||| ||||||||||  ||  |||||||||| ||||||||||||| | |||||| |||||| ||||    
T  30899093 acccaacacactgaaggtgttaaaggctgcaatgaaggcaacccaaatgccaccattaggtggctagaggcg 30899164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 189 - 244
Target Start/End: Original strand, 43167987 - 43168042
Alignment:
Q  189 actaaagccaccctttcaaacccaacacaatgaaggtgttggagaatgcaatgaag 244  Q
    |||||| ||||||  ||||| |||||||||||||||||||||||  ||||||||||    
T  43167987 actaaatccaccccctcaaagccaacacaatgaaggtgttggaggctgcaatgaag 43168042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #30
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 182 - 244
Target Start/End: Original strand, 1661278 - 1661340
Alignment:
Q  182 atgtggaactaaagccaccctttcaaacccaacacaatgaaggtgttggagaatgcaatgaag 244  Q
    |||||| |||||| ||||||  ||||| ||||| |||||||||||||||||  ||||||||||    
T  1661278 atgtgggactaaatccaccccgtcaaagccaacgcaatgaaggtgttggaggctgcaatgaag 1661340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #31
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 182 - 232
Target Start/End: Original strand, 40121705 - 40121755
Alignment:
Q  182 atgtggaactaaagccaccctttcaaacccaacacaatgaaggtgttggag 232  Q
    ||||||||||||| ||||||  ||||| |||||||||| ||||||||||||    
T  40121705 atgtggaactaaatccaccccctcaaagccaacacaataaaggtgttggag 40121755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #32
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 182 - 244
Target Start/End: Complemental strand, 41670885 - 41670823
Alignment:
Q  182 atgtggaactaaagccaccctttcaaacccaacacaatgaaggtgttggagaatgcaatgaag 244  Q
    |||||| |||||| ||||||  ||||| |||||||||||| ||||||||||  ||||||||||    
T  41670885 atgtgggactaaatccaccccctcaaagccaacacaatgagggtgttggaggctgcaatgaag 41670823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #33
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 189 - 262
Target Start/End: Original strand, 10193470 - 10193543
Alignment:
Q  189 actaaagccaccctttcaaacccaacacaatgaaggtgttggagaatgcaatgaagacaacccaaatgccgcaa 262  Q
    |||||| ||||||  ||| || ||||||||| |||| |||||||  |||||| ||| |||||||||||||||||    
T  10193470 actaaacccaccccctcacacacaacacaataaaggagttggaggctgcaattaaggcaacccaaatgccgcaa 10193543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #34
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 208 - 244
Target Start/End: Original strand, 14092014 - 14092050
Alignment:
Q  208 acccaacacaatgaaggtgttggagaatgcaatgaag 244  Q
    |||||||||||||||||||||||||  ||||||||||    
T  14092014 acccaacacaatgaaggtgttggaggctgcaatgaag 14092050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #35
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 208 - 244
Target Start/End: Original strand, 14402032 - 14402068
Alignment:
Q  208 acccaacacaatgaaggtgttggagaatgcaatgaag 244  Q
    |||||||||||||||||||||||||  ||||||||||    
T  14402032 acccaacacaatgaaggtgttggaggctgcaatgaag 14402068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #36
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 148 - 224
Target Start/End: Original strand, 21033884 - 21033960
Alignment:
Q  148 tttataaacactacacaaaccatatctctaggcaatgtggaactaaagccaccctttcaaacccaacacaatgaagg 224  Q
    ||||||||||| ||| |  ||||||||||||||||||||  ||||||  ||||| |||| || ||||| ||||||||    
T  21033884 tttataaacaccacaaatgccatatctctaggcaatgtgagactaaattcaccccttcacacacaacataatgaagg 21033960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #37
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 204 - 244
Target Start/End: Complemental strand, 41670579 - 41670539
Alignment:
Q  204 tcaaacccaacacaatgaaggtgttggagaatgcaatgaag 244  Q
    ||||| ||||||||| ||||||||||||| |||||||||||    
T  41670579 tcaaagccaacacaacgaaggtgttggaggatgcaatgaag 41670539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 78; Significance: 3e-36; HSPs: 24)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 146 - 279
Target Start/End: Complemental strand, 4796411 - 4796278
Alignment:
Q  146 gctttataaacactacacaaaccatatctctaggcaatgtggaactaaagccaccctttcaaacccaacacaatgaaggtgttggagaatgcaatgaaga 245  Q
    |||||||||||||||||||  ||||||||||| ||||||||  |||||| |||||| |||| |||||||||||||||||||||||||  ||||||||||     
T  4796411 gctttataaacactacacatgccatatctctaagcaatgtgtgactaaatccaccccttcacacccaacacaatgaaggtgttggaggctgcaatgaagg 4796312  T
Q  246 caacccaaatgccgcaattaggaggctaggggcg 279  Q
    |||||||||||| ||||||| | |||||||||||    
T  4796311 caacccaaatgctgcaattatgcggctaggggcg 4796278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 138 - 279
Target Start/End: Original strand, 31973477 - 31973618
Alignment:
Q  138 ctgccaaagctttataaacactacacaaaccatatctctaggcaatgtggaactaaagccaccctttcaaacccaacacaatgaaggtgttggagaatgc 237  Q
    ||||| || |||||||||||||||| |  |||||||||||| |||||||| |||||| ||||||||||| |||||||||||||||||||||||||  |||    
T  31973477 ctgcccaaactttataaacactacataggccatatctctagacaatgtgggactaaatccaccctttcacacccaacacaatgaaggtgttggaggctgc 31973576  T
Q  238 aatgaagacaacccaaatgccgcaattaggaggctaggggcg 279  Q
    ||| ||| |||| |||||||| |||||||| |||||||||||    
T  31973577 aataaaggcaactcaaatgcctcaattaggcggctaggggcg 31973618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 138 - 277
Target Start/End: Complemental strand, 16275302 - 16275164
Alignment:
Q  138 ctgccaaagctttataaacactacacaaaccatatctctaggcaatgtggaactaaagccaccctttcaaacccaacacaatgaaggtgttggagaatgc 237  Q
    ||||| || ||||| | ||||||||||  ||||||||||||||||||||| |||||| |||||| || | | ||||||||||||||||   ||||  |||    
T  16275302 ctgcccaaactttacacacactacacaggccatatctctaggcaatgtgggactaaatccaccccttgacatccaacacaatgaaggt-acggaggctgc 16275204  T
Q  238 aatgaagacaacccaaatgccgcaattaggaggctagggg 277  Q
    ||||||| |||||||||||||||||| ||| |||||||||    
T  16275203 aatgaaggcaacccaaatgccgcaatcaggtggctagggg 16275164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 180 - 279
Target Start/End: Original strand, 31973210 - 31973309
Alignment:
Q  180 caatgtggaactaaagccaccctttcaaacccaacacaatgaaggtgttggagaatgcaatgaagacaacccaaatgccgcaattaggaggctaggggcg 279  Q
    ||||| || |||||| |||||| |||||||||||||||| |||||||||||||| | ||||||||  ||||||||||||||||||||| |||| ||||||    
T  31973210 caatgagggactaaatccaccccttcaaacccaacacaacgaaggtgttggagatttcaatgaaggaaacccaaatgccgcaattaggcggctgggggcg 31973309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 168 - 265
Target Start/End: Original strand, 15844297 - 15844394
Alignment:
Q  168 catatctctaggcaatgtggaactaaagccaccctttcaaacccaacacaatgaaggtgttggagaatgcaatgaagacaacccaaatgccgcaatta 265  Q
    |||||||||||| ||||||| |||||| |||||| |||| || ||||||||||||||||||| ||  ||||| ||||  |||||||||||||||||||    
T  15844297 catatctctaggaaatgtgggactaaatccaccccttcacactcaacacaatgaaggtgttgtaggttgcaacgaaggtaacccaaatgccgcaatta 15844394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 175 - 274
Target Start/End: Complemental strand, 28362566 - 28362467
Alignment:
Q  175 ctaggcaatgtggaactaaagccaccctttcaaacccaacacaatgaaggtgttggagaatgcaatgaagacaacccaaatgccgcaattaggaggctag 274  Q
    ||||||||| || ||||||| ||||||| ||| |||||| ||||  |||||  |||||| |||||||||| ||| |||||||| ||||||||||||||||    
T  28362566 ctaggcaatatgaaactaaatccaccctctcacacccaatacaactaaggtactggagattgcaatgaaggcaaaccaaatgctgcaattaggaggctag 28362467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 146 - 229
Target Start/End: Original strand, 30587837 - 30587920
Alignment:
Q  146 gctttataaacactacacaaaccatatctctaggcaatgtggaactaaagccaccctttcaaacccaacacaatgaaggtgttg 229  Q
    |||||||| ||||||||||  ||||||||||  ||||||||| |||||| ||||||||| || ||||||||| |||||||||||    
T  30587837 gctttatacacactacacatgccatatctctgagcaatgtgggactaaatccacccttttaagcccaacacattgaaggtgttg 30587920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 182 - 264
Target Start/End: Original strand, 873783 - 873865
Alignment:
Q  182 atgtggaactaaagccaccctttcaaacccaacacaatgaaggtgttggagaatgcaatgaagacaacccaaatgccgcaatt 264  Q
    |||||| |||||| ||||||  ||||| ||||||||||||||||||||||   |||||||||| ||| ||||| |||||||||    
T  873783 atgtgggactaaatccaccccctcaaagccaacacaatgaaggtgttggaagctgcaatgaaggcaaaccaaaggccgcaatt 873865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 210 - 264
Target Start/End: Original strand, 17435353 - 17435407
Alignment:
Q  210 ccaacacaatgaaggtgttggagaatgcaatgaagacaacccaaatgccgcaatt 264  Q
    |||||||||||||||||||||||  |||||||||||||| ||||||||| |||||    
T  17435353 ccaacacaatgaaggtgttggaggttgcaatgaagacaaaccaaatgcctcaatt 17435407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 182 - 264
Target Start/End: Original strand, 28010203 - 28010285
Alignment:
Q  182 atgtggaactaaagccaccctttcaaacccaacacaatgaaggtgttggagaatgcaatgaagacaacccaaatgccgcaatt 264  Q
    |||||| |||||| ||||||  ||||| |||||||||||||||||||| ||  |||||||||| ||| ||||| |||||||||    
T  28010203 atgtgggactaaatccaccccctcaaagccaacacaatgaaggtgttgaaggctgcaatgaaggcaagccaaaggccgcaatt 28010285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 148 - 249
Target Start/End: Original strand, 904806 - 904907
Alignment:
Q  148 tttataaacactacacaaaccatatctctaggcaatgtggaactaaagccaccctttcaaacccaacacaatgaaggtgttggagaatgcaatgaagaca 247  Q
    |||||||||||||||||| |||||| | |  ||||||||| |||||| |||||| ||||||  ||||||||||||||  ||| ||  |||||||||| ||    
T  904806 tttataaacactacacaagccatatatgttagcaatgtgggactaaatccaccccttcaaaggcaacacaatgaagggcttgaaggctgcaatgaaggca 904905  T
Q  248 ac 249  Q
    ||    
T  904906 ac 904907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 210 - 265
Target Start/End: Original strand, 20319056 - 20319110
Alignment:
Q  210 ccaacacaatgaaggtgttggagaatgcaatgaagacaacccaaatgccgcaatta 265  Q
    ||||||| ||||||||||||||| |||||||| || ||||||||||||||||||||    
T  20319056 ccaacaccatgaaggtgttggaggatgcaatgcag-caacccaaatgccgcaatta 20319110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 182 - 244
Target Start/End: Complemental strand, 27760408 - 27760346
Alignment:
Q  182 atgtggaactaaagccaccctttcaaacccaacacaatgaaggtgttggagaatgcaatgaag 244  Q
    |||||| |||||| ||||||  ||||| |||||||||||||||||||||||  ||||||||||    
T  27760408 atgtgggactaaatccaccccctcaaagccaacacaatgaaggtgttggaggctgcaatgaag 27760346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 182 - 264
Target Start/End: Original strand, 37995721 - 37995803
Alignment:
Q  182 atgtggaactaaagccaccctttcaaacccaacacaatgaaggtgttggagaatgcaatgaagacaacccaaatgccgcaatt 264  Q
    |||||| |||||| ||||||  ||||| ||||||||||||||||||||||   || ||||||| ||| ||||| |||||||||    
T  37995721 atgtgggactaaatccaccccctcaaagccaacacaatgaaggtgttggaagctggaatgaaggcaaaccaaaggccgcaatt 37995803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 183 - 256
Target Start/End: Complemental strand, 24918180 - 24918107
Alignment:
Q  183 tgtggaactaaagccaccctttcaaacccaacacaatgaaggtgttggagaatgcaatgaagacaacccaaatg 256  Q
    ||||| |||||| ||||||  ||||| ||||||||||||||||||||||   |||||||||| ||| |||||||    
T  24918180 tgtgggactaaatccaccccctcaaagccaacacaatgaaggtgttggaagttgcaatgaaggcaaaccaaatg 24918107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 183 - 264
Target Start/End: Complemental strand, 24994088 - 24994007
Alignment:
Q  183 tgtggaactaaagccaccctttcaaacccaacacaatgaaggtgttggagaatgcaatgaagacaacccaaatgccgcaatt 264  Q
    ||||| |||||| ||||||  ||||| ||||||||||||||||||||||   ||||||||||  || ||||||| |||||||    
T  24994088 tgtgggactaaatccaccccctcaaagccaacacaatgaaggtgttggaagttgcaatgaaggtaaaccaaatgtcgcaatt 24994007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 182 - 241
Target Start/End: Original strand, 1028180 - 1028239
Alignment:
Q  182 atgtggaactaaagccaccctttcaaacccaacacaatgaaggtgttggagaatgcaatg 241  Q
    |||||| |||||| ||||||  ||||| |||||||||||||||||||||||  |||||||    
T  1028180 atgtgggactaaatccaccccctcaaagccaacacaatgaaggtgttggaggctgcaatg 1028239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 182 - 232
Target Start/End: Complemental strand, 13843714 - 13843664
Alignment:
Q  182 atgtggaactaaagccaccctttcaaacccaacacaatgaaggtgttggag 232  Q
    |||||| |||||| ||||||  ||||| |||||||||||||||||||||||    
T  13843714 atgtgggactaaatccaccccctcaaagccaacacaatgaaggtgttggag 13843664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 182 - 232
Target Start/End: Complemental strand, 13844030 - 13843980
Alignment:
Q  182 atgtggaactaaagccaccctttcaaacccaacacaatgaaggtgttggag 232  Q
    |||||| |||||| ||||||  ||||| |||||||||||||||||||||||    
T  13844030 atgtgggactaaatccaccccctcaaagccaacacaatgaaggtgttggag 13843980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 182 - 232
Target Start/End: Original strand, 17016180 - 17016230
Alignment:
Q  182 atgtggaactaaagccaccctttcaaacccaacacaatgaaggtgttggag 232  Q
    |||||| |||||| ||||||  ||||| |||||||||||||||||||||||    
T  17016180 atgtgggactaaatccaccccctcaaagccaacacaatgaaggtgttggag 17016230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 182 - 244
Target Start/End: Complemental strand, 27760092 - 27760030
Alignment:
Q  182 atgtggaactaaagccaccctttcaaacccaacacaatgaaggtgttggagaatgcaatgaag 244  Q
    |||||| |||||| ||||||  ||||| ||||||||||||| |||||||||  ||||||||||    
T  27760092 atgtgggactaaatccaccccctcaaagccaacacaatgaaagtgttggaggctgcaatgaag 27760030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 146 - 248
Target Start/End: Complemental strand, 33105631 - 33105529
Alignment:
Q  146 gctttataaacactacacaaaccatatctctaggcaatgtggaactaaagccaccctttcaaacccaacacaatgaaggtgttggagaatgcaatgaaga 245  Q
    |||||||||| |||| ||| || |||||||||  |||||||| ||| ||  || |||||||||  |||||||||||| |||||| ||  || ||||||||    
T  33105631 gctttataaatactagacatactatatctctattcaatgtgggactgaatacatcctttcaaattcaacacaatgaaagtgttgaaggttggaatgaaga 33105532  T
Q  246 caa 248  Q
    |||    
T  33105531 caa 33105529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 184 - 232
Target Start/End: Complemental strand, 20811469 - 20811421
Alignment:
Q  184 gtggaactaaagccaccctttcaaacccaacacaatgaaggtgttggag 232  Q
    |||| |||||| ||||||  ||||| |||||||||||||||||||||||    
T  20811469 gtgggactaaatccaccccctcaaagccaacacaatgaaggtgttggag 20811421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 139 - 187
Target Start/End: Original strand, 38603955 - 38604003
Alignment:
Q  139 tgccaaagctttataaacactacacaaaccatatctctaggcaatgtgg 187  Q
    |||| |||||||||||||||||||||  |||||||| || |||||||||    
T  38603955 tgcccaagctttataaacactacacatgccatatctttaagcaatgtgg 38604003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 70; Significance: 2e-31; HSPs: 20)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 144 - 277
Target Start/End: Complemental strand, 38887156 - 38887023
Alignment:
Q  144 aagctttataaacactacacaaaccatatctctaggcaatgtggaactaaagccaccctttcaaacccaacacaatgaaggtgttggagaatgcaatgaa 243  Q
    ||||||||||| ||||||| |   |||||||||||||||||||| | |||| | |||| |||| |||||||||||||||||||||||||  ||||| |||    
T  38887156 aagctttataagcactacataggtcatatctctaggcaatgtgggattaaatcaaccccttcacacccaacacaatgaaggtgttggaggctgcaacgaa 38887057  T
Q  244 gacaacccaaatgccgcaattaggaggctagggg 277  Q
    | |||||||||||||||||||||| |||||||||    
T  38887056 ggcaacccaaatgccgcaattaggcggctagggg 38887023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 138 - 257
Target Start/End: Complemental strand, 30590509 - 30590390
Alignment:
Q  138 ctgccaaagctttataaacactacacaaaccatatctctaggcaatgtggaactaaagccaccctttcaaacccaacacaatgaaggtgttggagaatgc 237  Q
    ||||| |||||||||||||||||||||  |||||| |||| ||||||||| |||||| |||||| |||| ||| |||||||||||||||||||||  |||    
T  30590509 ctgcccaagctttataaacactacacatgccatatatctatgcaatgtgggactaaatccaccccttcacaccaaacacaatgaaggtgttggaggctgc 30590410  T
Q  238 aatgaagacaacccaaatgc 257  Q
    ||||||| ||||||||||||    
T  30590409 aatgaaggcaacccaaatgc 30590390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 146 - 279
Target Start/End: Complemental strand, 39590750 - 39590619
Alignment:
Q  146 gctttataaacactacacaaaccatatctctaggcaatgtggaactaaagccaccctttcaaacccaacacaatgaaggtgttggagaatgcaatgaaga 245  Q
    ||||||||||||||| |||  ||||||||||| ||||||  | |||| | |||||| |||| ||| |||||||||||||||||||||| ||||||||||     
T  39590750 gctttataaacactagacaggccatatctctaagcaatgctggactatatccaccccttcacacc-aacacaatgaaggtgttggagactgcaatgaagg 39590652  T
Q  246 caacccaaatgccgcaattaggaggctaggggcg 279  Q
    | |||||||||||||||||||| |||||||||||    
T  39590651 c-acccaaatgccgcaattaggcggctaggggcg 39590619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 148 - 255
Target Start/End: Complemental strand, 26642638 - 26642531
Alignment:
Q  148 tttataaacactacacaaaccatatctctaggcaatgtggaactaaagccaccctttcaaacccaacacaatgaaggtgttggagaatgcaatgaagaca 247  Q
    |||||||||||||||||   ||||||||||||||||||||||||||| ||||||  ||| || |||||||||||||||||| |||| ||||||||||  |    
T  26642638 tttataaacactacacatgtcatatctctaggcaatgtggaactaaatccacccaatcacactcaacacaatgaaggtgtttgagactgcaatgaaggaa 26642539  T
Q  248 acccaaat 255  Q
    ||||||||    
T  26642538 acccaaat 26642531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 139 - 277
Target Start/End: Complemental strand, 34530047 - 34529909
Alignment:
Q  139 tgccaaagctttataaacactacacaaaccatatctctaggcaatgtggaactaaagccaccctttcaaacccaacacaatgaaggtgttggagaatgca 238  Q
    |||| ||||||||||||||||||||| |||||| |||||  |||||||| |||||| || ||| || | |||||||||||||||||| | ||||  |  |    
T  34530047 tgcccaagctttataaacactacacagaccatacctctaatcaatgtgggactaaatccgcccctttacacccaacacaatgaaggtataggaggcttaa 34529948  T
Q  239 atgaagacaacccaaatgccgcaattaggaggctagggg 277  Q
    |||||| |||||||||||||||||||||| ||| |||||    
T  34529947 atgaaggcaacccaaatgccgcaattaggcggccagggg 34529909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 148 - 267
Target Start/End: Complemental strand, 26639162 - 26639043
Alignment:
Q  148 tttataaacactacacaaaccatatctctaggcaatgtggaactaaagccaccctttcaaacccaacacaatgaaggtgttggagaatgcaatgaagaca 247  Q
    |||||||||||||||||   | |||||| ||||||||||| |||||| ||||||  ||| || |||||||||||||||||||| || ||||||||||  |    
T  26639162 tttataaacactacacatgtcgtatctcaaggcaatgtgggactaaatccaccccctcacactcaacacaatgaaggtgttggggactgcaatgaaggaa 26639063  T
Q  248 acccaaatgccgcaattagg 267  Q
    ||||||||| ||||||||||    
T  26639062 acccaaatgtcgcaattagg 26639043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 169 - 277
Target Start/End: Original strand, 28488406 - 28488514
Alignment:
Q  169 atatctctaggcaatgtggaactaaagccaccctttcaaacccaacacaatgaaggtgttggagaatgcaatgaagacaacccaaatgccgcaattagga 268  Q
    |||||| || ||||| ||| |||||| |||||| ||||||||||||||||||||||||||  ||  |||||||||| |||| |||||||| ||||||||     
T  28488406 atatctataagcaatatgggactaaatccaccccttcaaacccaacacaatgaaggtgtttaaggctgcaatgaaggcaactcaaatgccacaattaggc 28488505  T
Q  269 ggctagggg 277  Q
    || ||||||    
T  28488506 ggttagggg 28488514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 168 - 264
Target Start/End: Original strand, 44933154 - 44933250
Alignment:
Q  168 catatctctaggcaatgtggaactaaagccaccctttcaaacccaacacaatgaaggtgttggagaatgcaatgaagacaacccaaatgccgcaatt 264  Q
    |||||||||| |  |||||  |||||| |||||| ||||||||||||||||||||||||||||||  |||||||||| ||||||||| || ||||||    
T  44933154 catatctctaagtgatgtgagactaaatccaccccttcaaacccaacacaatgaaggtgttggagggtgcaatgaaggcaacccaaaggctgcaatt 44933250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 168 - 277
Target Start/End: Complemental strand, 25971457 - 25971348
Alignment:
Q  168 catatctctaggcaatgtggaactaaagccaccctttcaaacccaacacaatgaaggtgttggagaatgcaatgaagacaacccaaatgccgcaattagg 267  Q
    ||||||||| |||||||||  ||| || |||||| |||| ||||| ||||||||||||||||||   |||||||||| | ||| ||||| | ||||||||    
T  25971457 catatctcttggcaatgtgtgactgaatccaccccttcacacccagcacaatgaaggtgttggatgctgcaatgaaggctaccaaaatgtcacaattagg 25971358  T
Q  268 aggctagggg 277  Q
     |||||||||    
T  25971357 cggctagggg 25971348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 182 - 264
Target Start/End: Original strand, 23027592 - 23027674
Alignment:
Q  182 atgtggaactaaagccaccctttcaaacccaacacaatgaaggtgttggagaatgcaatgaagacaacccaaatgccgcaatt 264  Q
    |||||| |||||| ||||||  ||||| ||||||||||||||||||| |||  |||||||||| ||| |||||||| ||||||    
T  23027592 atgtgggactaaatccaccccctcaaagccaacacaatgaaggtgtttgaggctgcaatgaaggcaagccaaatgctgcaatt 23027674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 182 - 264
Target Start/End: Original strand, 23027915 - 23027997
Alignment:
Q  182 atgtggaactaaagccaccctttcaaacccaacacaatgaaggtgttggagaatgcaatgaagacaacccaaatgccgcaatt 264  Q
    |||||| |||||| ||||||  ||||| |||||||||||||||||||| ||  |||||||||| ||| ||||| |||||||||    
T  23027915 atgtgggactaaatccaccccctcaaagccaacacaatgaaggtgttgaaggctgcaatgaaggcaagccaaaggccgcaatt 23027997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 182 - 264
Target Start/End: Complemental strand, 31767018 - 31766936
Alignment:
Q  182 atgtggaactaaagccaccctttcaaacccaacacaatgaaggtgttggagaatgcaatgaagacaacccaaatgccgcaatt 264  Q
    |||||| |||||| ||||||  ||||| ||||||||||||||| |||||||  |||||||||| ||| ||||| |||||||||    
T  31767018 atgtgggactaaatccaccccctcaaagccaacacaatgaaggggttggaggctgcaatgaaggcaaaccaaaggccgcaatt 31766936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 204 - 264
Target Start/End: Original strand, 3184012 - 3184072
Alignment:
Q  204 tcaaacccaacacaatgaaggtgttggagaatgcaatgaagacaacccaaatgccgcaatt 264  Q
    ||||| |||||||||||||||||||||||  |||||||||| ||| ||||| |||||||||    
T  3184012 tcaaagccaacacaatgaaggtgttggaggctgcaatgaaggcaaaccaaaggccgcaatt 3184072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 181 - 244
Target Start/End: Original strand, 20298602 - 20298665
Alignment:
Q  181 aatgtggaactaaagccaccctttcaaacccaacacaatgaaggtgttggagaatgcaatgaag 244  Q
    ||||||| |||||| ||||||  ||||| |||||||||||||||||||||||  ||||||||||    
T  20298602 aatgtgggactaaatccaccccctcaaagccaacacaatgaaggtgttggaggctgcaatgaag 20298665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 182 - 244
Target Start/End: Original strand, 21085235 - 21085297
Alignment:
Q  182 atgtggaactaaagccaccctttcaaacccaacacaatgaaggtgttggagaatgcaatgaag 244  Q
    |||||| |||||| ||||||  ||||| |||||||||||||||||||||||  ||||||||||    
T  21085235 atgtgggactaaatccaccccctcaaagccaacacaatgaaggtgttggaggctgcaatgaag 21085297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 167 - 279
Target Start/End: Complemental strand, 15157114 - 15157002
Alignment:
Q  167 ccatatctctaggcaatgtggaactaaagccaccctttcaaacccaacacaatgaaggtgttggagaatgcaatgaagacaacccaaatgccgcaattag 266  Q
    |||||||| ||  |||||||| |||||| ||||||||||| ||||||||||| ||| |   |||||  |||||| |||  ||||||||| ||||||||||    
T  15157114 ccatatctatattcaatgtgggactaaatccaccctttcacacccaacacaacgaacgcaatggaggctgcaattaagggaacccaaattccgcaattag 15157015  T
Q  267 gaggctaggggcg 279  Q
      |||||| ||||    
T  15157014 acggctagaggcg 15157002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 149 - 224
Target Start/End: Original strand, 16213190 - 16213265
Alignment:
Q  149 ttataaacactacacaaaccatatctctaggcaatgtggaactaaagccaccctttcaaacccaacacaatgaagg 224  Q
    |||||| ||||||| |  ||||||||||||||| ||||  |||||| |||||| |||| | |||||||||||||||    
T  16213190 ttataatcactacataggccatatctctaggcagtgtgagactaaatccaccccttcacatccaacacaatgaagg 16213265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 148 - 224
Target Start/End: Complemental strand, 30602948 - 30602874
Alignment:
Q  148 tttataaacactacacaaaccatatctctaggcaatgtggaactaaagccaccctttcaaacccaacacaatgaagg 224  Q
    |||||||||||||||||  ||| ||||||| |||||||||  ||||| |||||  ||||||||||| ||| ||||||    
T  30602948 tttataaacactacacatgccacatctctaagcaatgtgggtctaaatccacc--ttcaaacccaatacagtgaagg 30602874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 180 - 232
Target Start/End: Complemental strand, 36997185 - 36997133
Alignment:
Q  180 caatgtggaactaaagccaccctttcaaacccaacacaatgaaggtgttggag 232  Q
    |||||||| |||||  ||||||  ||||| |||||||||||||||||||||||    
T  36997185 caatgtgggactaattccaccccctcaaagccaacacaatgaaggtgttggag 36997133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 204 - 244
Target Start/End: Complemental strand, 40754439 - 40754399
Alignment:
Q  204 tcaaacccaacacaatgaaggtgttggagaatgcaatgaag 244  Q
    ||||| |||||||||||||||||||||||  ||||||||||    
T  40754439 tcaaagccaacacaatgaaggtgttggaggctgcaatgaag 40754399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 68; Significance: 3e-30; HSPs: 36)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 144 - 275
Target Start/End: Original strand, 41590278 - 41590407
Alignment:
Q  144 aagctttataaacactacacaaaccatatctctaggcaatgtggaactaaagccaccctttcaaacccaacacaatgaaggtgttggagaatgcaatgaa 243  Q
    ||||||||||| ||||||||| ||||||| |||||| |||||||||||||| |||||| |||| |||| ||||||||||||||||||||  |||||||||    
T  41590278 aagctttataa-cactacacagaccatatttctaggaaatgtggaactaaacccaccccttcacacccgacacaatgaaggtgttggaggctgcaatgaa 41590376  T
Q  244 gacaacccaaatgccgcaattaggaggctagg 275  Q
    | |||||| ||| ||||||||||| |||||||    
T  41590377 ggcaaccc-aattccgcaattaggcggctagg 41590407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 138 - 279
Target Start/End: Original strand, 34626817 - 34626958
Alignment:
Q  138 ctgccaaagctttataaacactacacaaaccatatctctaggcaatgtggaactaaagccaccctttcaaacccaacacaatgaaggtgttggagaatgc 237  Q
    ||||| |||||||||||||||||||||  |||||||||| || ||||||  |||||| |||| | |||| |||||||| ||||||||||||||||  |||    
T  34626817 ctgcccaagctttataaacactacacatgccatatctctgggaaatgtgagactaaatccactccttcacacccaacagaatgaaggtgttggaggctgc 34626916  T
Q  238 aatgaagacaacccaaatgccgcaattaggaggctaggggcg 279  Q
    ||||||| ||||| | |||| ||||||||| |||||||||||    
T  34626917 aatgaaggcaaccaagatgctgcaattaggtggctaggggcg 34626958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 144 - 279
Target Start/End: Complemental strand, 18998766 - 18998631
Alignment:
Q  144 aagctttataaacactacacaaaccatatctctaggcaatgtggaactaaagccaccctttcaaacccaacacaatgaaggtgttggagaatgcaatgaa 243  Q
    |||||||||| |||||||| |   |||||||||||||||||||| |||||| ||||||||||| ||||||||||  ||||||||||| |  |||||||||    
T  18998766 aagctttatatacactacataggtcatatctctaggcaatgtgggactaaatccaccctttcacacccaacacatcgaaggtgttggtggctgcaatgaa 18998667  T
Q  244 gacaacccaaatgccgcaattaggaggctaggggcg 279  Q
    || ||||||||| |||||||| |  |||||||||||    
T  18998666 gaaaacccaaattccgcaatttgacggctaggggcg 18998631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 139 - 277
Target Start/End: Original strand, 19810742 - 19810879
Alignment:
Q  139 tgccaaagctttataaacactacacaaaccatatctctaggcaatgtggaactaaagccaccctttcaaacccaacacaatgaaggtgttggagaatgca 238  Q
    |||| |||||||||||||| | ||||  ||||||||||||||||||||| ||||  || |||| |||| ||| ||||||||||||||||| |||  ||||    
T  19810742 tgcccaagctttataaacattgcacaggccatatctctaggcaatgtgggactagtgc-accccttcacacctaacacaatgaaggtgttcgaggttgca 19810840  T
Q  239 atgaagacaacccaaatgccgcaattaggaggctagggg 277  Q
    |||||| ||||||||||||||||||||||  ||||||||    
T  19810841 atgaagccaacccaaatgccgcaattaggcagctagggg 19810879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 146 - 286
Target Start/End: Original strand, 7907895 - 7908036
Alignment:
Q  146 gctttataaacactacacaaaccatatctctaggcaatgtggaactaaagccaccc-tttcaaacccaacacaatgaaggtgttggagaatgcaatgaag 244  Q
    |||||||||||||||||||  ||||||||||  | ||||||| |||||| |||||| ||||| |||||||||||||||  ||  |||| |||||||||||    
T  7907895 gctttataaacactacacatgccatatctctgagaaatgtgggactaaatccacccctttcacacccaacacaatgaaactgccggaggatgcaatgaag 7907994  T
Q  245 acaacccaaatgccgcaattaggaggctaggggcgaccgcaa 286  Q
     ||||||||||||| |||||||| ||||||||| ||| ||||    
T  7907995 gcaacccaaatgccacaattaggcggctaggggggactgcaa 7908036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 150 - 277
Target Start/End: Complemental strand, 51515764 - 51515636
Alignment:
Q  150 tataaacactacacaaaccatatctctaggcaatgtggaactaaagccaccc-tttcaaacccaacacaatgaaggtgttggagaatgcaatgaagacaa 248  Q
    |||||||||||||||   |||||||||||| ||||| | |||||| |||||| ||||| |||||||||||||||||||||||||   ||||||||| |||    
T  51515764 tataaacactacacatggcatatctctaggtaatgtcggactaaatccacccctttcacacccaacacaatgaaggtgttggaggcagcaatgaaggcaa 51515665  T
Q  249 cccaaatgccgcaattaggaggctagggg 277  Q
     ||||||||| |||||||| |||||||||    
T  51515664 tccaaatgccacaattaggcggctagggg 51515636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 139 - 278
Target Start/End: Original strand, 19811055 - 19811194
Alignment:
Q  139 tgccaaagctttataaacactacacaaaccatatctctaggcaatgtggaactaaagccaccctttcaaacccaacacaatgaaggtgttggagaatgca 238  Q
    |||| ||||| || |||||||| |||  |||||||||||||||| |||| |||||| ||||   |||| ||||||||||| ||||| |||||||  ||||    
T  19811055 tgcccaagctataaaaacactaaacaggccatatctctaggcaacgtgggactaaatccacatcttcacacccaacacaacgaaggagttggaggctgca 19811154  T
Q  239 atgaagacaacccaaatgccgcaattaggaggctaggggc 278  Q
    |||||| ||||||||||||| |||||||| ||||||||||    
T  19811155 atgaaggcaacccaaatgccacaattaggcggctaggggc 19811194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 150 - 267
Target Start/End: Complemental strand, 6868182 - 6868065
Alignment:
Q  150 tataaacactacacaaaccatatctctaggcaatgtggaactaaagccaccctttcaaacccaacacaatgaaggtgttggagaatgcaatgaagacaac 249  Q
    |||||||||| ||||  ||||||||||| | ||||||| |||||| |||||| ||||||||||||| ||||||||||||||||  |||| ||| | ||||    
T  6868182 tataaacactgcacaggccatatctctaagtaatgtgggactaaatccaccccttcaaacccaacaaaatgaaggtgttggaggctgcagtgagggcaac 6868083  T
Q  250 ccaaatgccgcaattagg 267  Q
    |||||||| |||||||||    
T  6868082 ccaaatgctgcaattagg 6868065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 139 - 279
Target Start/End: Original strand, 33248369 - 33248514
Alignment:
Q  139 tgccaaagctttataaacactacacaaaccatatc-----tctaggcaatgtggaactaaagccaccctttcaaacccaacacaatgaaggtgttggaga 233  Q
    ||||||| || ||||||||||||||| |||||||      |||||||||||||  |||||| |||||| || | ||||||||||||||||||||||||||    
T  33248369 tgccaaatctctataaacactacacagaccatatgacatgtctaggcaatgtgagactaaatccacccgttaacacccaacacaatgaaggtgttggaga 33248468  T
Q  234 atgcaatgaagacaacccaaatgccgcaattaggaggctaggggcg 279  Q
     |||||| ||  |||||| |||||||||||||||  ||||||||||    
T  33248469 ttgcaattaatgcaacccgaatgccgcaattaggcagctaggggcg 33248514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 139 - 279
Target Start/End: Original strand, 33268541 - 33268686
Alignment:
Q  139 tgccaaagctttataaacactacacaaaccatatc-----tctaggcaatgtggaactaaagccaccctttcaaacccaacacaatgaaggtgttggaga 233  Q
    ||||||| || ||||||||||||||| |||||||      |||||||||||||  |||||| |||||| || | ||||||||||||||||||||||||||    
T  33268541 tgccaaatctctataaacactacacagaccatatgacatgtctaggcaatgtgagactaaatccacccgttaacacccaacacaatgaaggtgttggaga 33268640  T
Q  234 atgcaatgaagacaacccaaatgccgcaattaggaggctaggggcg 279  Q
     |||||| ||  |||||| |||||||||||||||  ||||||||||    
T  33268641 ttgcaattaatgcaacccgaatgccgcaattaggcagctaggggcg 33268686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 146 - 277
Target Start/End: Original strand, 12581394 - 12581526
Alignment:
Q  146 gctttataaacactacacaaaccatatctctaggcaatgtggaactaaagccaccc-tttcaaacccaacacaatgaaggtgttggagaatgcaatgaag 244  Q
    ||||||||||||||| |||  |||||||| | ||||| |||| |||||| |||||| ||||| ||||||||||||||||||||||||   || ||  |||    
T  12581394 gctttataaacactaaacatgccatatctttgggcaacgtgggactaaatccacccatttcacacccaacacaatgaaggtgttggaagctgaaacaaag 12581493  T
Q  245 acaacccaaatgccgcaattaggaggctagggg 277  Q
     |||||||||||||| | ||||| |||||||||    
T  12581494 gcaacccaaatgccggacttaggcggctagggg 12581526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 152 - 263
Target Start/End: Original strand, 40566323 - 40566434
Alignment:
Q  152 taaacactacacaaaccatatctctaggcaatgtggaactaaagccaccctttcaaacccaacacaatgaaggtgttggagaatgcaatgaagacaaccc 251  Q
    |||||||||||||  ||||||| ||||||||| ||| ||| || ||| || |||| ||||||||||||||||||||||||   || ||||||| ||||||    
T  40566323 taaacactacacaggccatatcgctaggcaatatgggactgaatccatcccttcacacccaacacaatgaaggtgttggaagctgtaatgaaggcaaccc 40566422  T
Q  252 aaatgccgcaat 263  Q
    || |||||||||    
T  40566423 aactgccgcaat 40566434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 168 - 274
Target Start/End: Complemental strand, 13978616 - 13978510
Alignment:
Q  168 catatctctaggcaatgtggaactaaagccaccctttcaaacccaacacaatgaaggtgttggagaatgcaatgaagacaacccaaatgccgcaattagg 267  Q
    ||||| ||||| |||||||| ||||||| || || |||| ||||||||||||||| || |||||| ||||||||||| |||| |||||| ||||||| ||    
T  13978616 catatatctagacaatgtgggactaaagacatcccttcacacccaacacaatgaacgtattggaggatgcaatgaaggcaacacaaatgtcgcaattggg 13978517  T
Q  268 aggctag 274  Q
     ||||||    
T  13978516 cggctag 13978510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 167 - 229
Target Start/End: Original strand, 51188886 - 51188948
Alignment:
Q  167 ccatatctctaggcaatgtggaactaaagccaccctttcaaacccaacacaatgaaggtgttg 229  Q
    ||||||||||| ||||||||| |||||| |||||| |||||||||||||||||||||||||||    
T  51188886 ccatatctctaagcaatgtgggactaaatccaccccttcaaacccaacacaatgaaggtgttg 51188948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 182 - 264
Target Start/End: Original strand, 33879865 - 33879947
Alignment:
Q  182 atgtggaactaaagccaccctttcaaacccaacacaatgaaggtgttggagaatgcaatgaagacaacccaaatgccgcaatt 264  Q
    |||||| |||||| ||||||| ||||| |||||||||||||||||||||||  |||||||||| ||| ||||| | |||||||    
T  33879865 atgtgggactaaatccaccctctcaaagccaacacaatgaaggtgttggaggctgcaatgaaggcaaaccaaaggtcgcaatt 33879947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 182 - 264
Target Start/End: Complemental strand, 33964390 - 33964308
Alignment:
Q  182 atgtggaactaaagccaccctttcaaacccaacacaatgaaggtgttggagaatgcaatgaagacaacccaaatgccgcaatt 264  Q
    |||||| |||||| ||||||| ||||| |||||||||||||||||||||||  |||||||||| ||| ||||| | |||||||    
T  33964390 atgtgggactaaatccaccctctcaaagccaacacaatgaaggtgttggaggctgcaatgaaggcaaaccaaaggtcgcaatt 33964308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 208 - 277
Target Start/End: Complemental strand, 14623198 - 14623129
Alignment:
Q  208 acccaacacaatgaaggtgttggagaatgcaatgaagacaacccaaatgccgcaattaggaggctagggg 277  Q
    |||||||||||||||||||||||||  |||||||||| ||||||||| ||| | |||||| |||||||||    
T  14623198 acccaacacaatgaaggtgttggaggctgcaatgaaggcaacccaaacgccaccattaggcggctagggg 14623129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 176 - 262
Target Start/End: Complemental strand, 19459746 - 19459660
Alignment:
Q  176 taggcaatgtggaactaaagccaccctttcaaacccaacacaatgaaggtgttggagaatgcaatgaagacaacccaaatgccgcaa 262  Q
    |||||| ||||| |||||| ||||||  ||| ||||||||||||||||| |||||||  ||||||  || |||||||||||||||||    
T  19459746 taggcattgtgggactaaacccaccccctcacacccaacacaatgaaggagttggaggctgcaatttaggcaacccaaatgccgcaa 19459660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 138 - 277
Target Start/End: Complemental strand, 12410467 - 12410327
Alignment:
Q  138 ctgccaaagctttataaacactacacaaaccatatctctaggcaa-tgtggaactaaagccaccctttcaaacccaacacaatgaaggtgttggagaatg 236  Q
    ||||| || |||||||| ||||||| |  ||||||||||| | || ||||| |||||| | || | |||| ||||||||| |||||||||||||||  ||    
T  12410467 ctgcccaaactttataagcactacataggccatatctctatgaaaatgtgggactaaatcaactccttcacacccaacacgatgaaggtgttggaggctg 12410368  T
Q  237 caatgaagacaacccaaatgccgcaattaggaggctagggg 277  Q
    |||  |||  |||||||||||||||| ||||  ||||||||    
T  12410367 caacaaaggtaacccaaatgccgcaactaggcagctagggg 12410327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 184 - 264
Target Start/End: Complemental strand, 45264678 - 45264598
Alignment:
Q  184 gtggaactaaagccaccctttcaaacccaacacaatgaaggtgttggagaatgcaatgaagacaacccaaatgccgcaatt 264  Q
    |||| |||||| ||||||  ||||| |||||||||||||||||||||||  ||||| |||| ||| ||||| |||||||||    
T  45264678 gtgggactaaatccaccccctcaaagccaacacaatgaaggtgttggaggctgcaaagaaggcaaaccaaaggccgcaatt 45264598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 138 - 193
Target Start/End: Original strand, 19810001 - 19810056
Alignment:
Q  138 ctgccaaagctttataaacactacacaaaccatatctctaggcaatgtggaactaa 193  Q
    ||||| |||||||||||||| |||||| ||||||| |||||||||||||| |||||    
T  19810001 ctgcccaagctttataaacattacacagaccatatatctaggcaatgtgggactaa 19810056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 182 - 264
Target Start/End: Original strand, 2697418 - 2697500
Alignment:
Q  182 atgtggaactaaagccaccctttcaaacccaacacaatgaaggtgttggagaatgcaatgaagacaacccaaatgccgcaatt 264  Q
    |||||| |||||| ||||||  ||||| ||  |||||||||||||||||||  |||||||||||||| ||||| ||| |||||    
T  2697418 atgtgggactaaatccaccccctcaaagccgtcacaatgaaggtgttggaggctgcaatgaagacaaaccaaaggcctcaatt 2697500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 182 - 264
Target Start/End: Original strand, 4022212 - 4022294
Alignment:
Q  182 atgtggaactaaagccaccctttcaaacccaacacaatgaaggtgttggagaatgcaatgaagacaacccaaatgccgcaatt 264  Q
    |||||| |||||| ||||||  ||||| |||||||||||||||||||||||  ||| | |||| ||| ||||| |||||||||    
T  4022212 atgtgggactaaatccaccccctcaaagccaacacaatgaaggtgttggaggttgcgacgaaggcaaaccaaaggccgcaatt 4022294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 144 - 222
Target Start/End: Complemental strand, 18998448 - 18998370
Alignment:
Q  144 aagctttataaacactacacaaaccatatctctaggcaatgtggaactaaagccaccctttcaaacccaacacaatgaa 222  Q
    ||||||||||||||||||| || | ||||||||||||||||||  |||||  |  ||| |||| |||||||||||||||    
T  18998448 aagctttataaacactacaaaagcaatatctctaggcaatgtgagactaagtctgccccttcacacccaacacaatgaa 18998370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 182 - 240
Target Start/End: Original strand, 19937130 - 19937188
Alignment:
Q  182 atgtggaactaaagccaccctttcaaacccaacacaatgaaggtgttggagaatgcaat 240  Q
    |||||| |||||| ||||||  ||||| ||||||||||||||||||||||| |||||||    
T  19937130 atgtgggactaaatccaccccatcaaagccaacacaatgaaggtgttggaggatgcaat 19937188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 182 - 244
Target Start/End: Complemental strand, 31305728 - 31305666
Alignment:
Q  182 atgtggaactaaagccaccctttcaaacccaacacaatgaaggtgttggagaatgcaatgaag 244  Q
    |||||| |||||| ||||||  ||||| |||||||||||||||||||||||  ||||||||||    
T  31305728 atgtgggactaaatccaccccctcaaagccaacacaatgaaggtgttggaggctgcaatgaag 31305666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 168 - 226
Target Start/End: Original strand, 41590605 - 41590663
Alignment:
Q  168 catatctctaggcaatgtggaactaaagccaccctttcaaacccaacacaatgaaggtg 226  Q
    |||||||||||||||||||| ||||||  |||||  ||| |||||||||||||||||||    
T  41590605 catatctctaggcaatgtgggactaaattcaccccctcacacccaacacaatgaaggtg 41590663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 168 - 277
Target Start/End: Original strand, 5087831 - 5087940
Alignment:
Q  168 catatctctaggcaatgtggaactaaagccaccctttcaaacccaacacaatgaaggtgttggagaatgcaatgaagacaacccaaatgccgcaattagg 267  Q
    |||||||||| |||||| || ||| || |||||| || | |  || |||||||||||||||||||  ||||||||||  ||||||||| || |||||||     
T  5087831 catatctctaagcaatgagggactgaatccaccccttaatattcagcacaatgaaggtgttggaggttgcaatgaaggaaacccaaataccacaattaga 5087930  T
Q  268 aggctagggg 277  Q
     |||||||||    
T  5087931 cggctagggg 5087940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 182 - 244
Target Start/End: Original strand, 8520180 - 8520242
Alignment:
Q  182 atgtggaactaaagccaccctttcaaacccaacacaatgaaggtgttggagaatgcaatgaag 244  Q
    |||||| |||||| ||||||  ||||| ||||||||||||||| |||||||  ||||||||||    
T  8520180 atgtgggactaaatccaccccctcaaagccaacacaatgaaggggttggaggctgcaatgaag 8520242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 224 - 266
Target Start/End: Original strand, 11636199 - 11636241
Alignment:
Q  224 gtgttggagaatgcaatgaagacaacccaaatgccgcaattag 266  Q
    |||||||||  ||||||||||||||||||||||| ||||||||    
T  11636199 gtgttggaggctgcaatgaagacaacccaaatgctgcaattag 11636241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #31
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 139 - 263
Target Start/End: Original strand, 17557767 - 17557890
Alignment:
Q  139 tgccaaagctttataaacactacacaaaccatatctctaggcaatgtggaactaaagccaccctttcaaacccaacacaatgaaggtgttggagaatgca 238  Q
    |||| ||||||||||||||||||||    |||||||||||||||||||| | ||||  ||||| |  | |||  ||||||||||  ||||||||  |  |    
T  17557767 tgcctaagctttataaacactacac--gtcatatctctaggcaatgtgggattaaattcacccctgtacaccagacacaatgaatctgttggaggcttga 17557864  T
Q  239 atgaagac-aacccaaatgccgcaat 263  Q
    |||||||| |||||||||||||||||    
T  17557865 atgaagacaaacccaaatgccgcaat 17557890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #32
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 182 - 244
Target Start/End: Complemental strand, 20735539 - 20735477
Alignment:
Q  182 atgtggaactaaagccaccctttcaaacccaacacaatgaaggtgttggagaatgcaatgaag 244  Q
    |||||| | |||| ||||||  ||||| |||||||||||||||||||||||  ||||||||||    
T  20735539 atgtgggattaaatccaccccctcaaagccaacacaatgaaggtgttggaggctgcaatgaag 20735477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #33
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 150 - 267
Target Start/End: Complemental strand, 8000565 - 8000443
Alignment:
Q  150 tataaacactacacaaa--ccatatctctaggcaatgtggaactaaagccaccc-tttcaaacccaacacaatgaaggtgttggagaatgcaatgaaga- 245  Q
    ||||||||||||||| |  ||||||||||| | ||||| | | |||| |||||| ||| |  |||||||||||||| |||  ||||  ||||||||| |     
T  8000565 tataaacactacacacatgccatatctctatgaaatgtaggaataaatccacccctttgacgcccaacacaatgaaagtgccggaggctgcaatgaaaag 8000466  T
Q  246 -caacccaaatgccgcaattagg 267  Q
     ||||||||||||||||||||||    
T  8000465 gcaacccaaatgccgcaattagg 8000443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #34
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 204 - 244
Target Start/End: Original strand, 8520344 - 8520384
Alignment:
Q  204 tcaaacccaacacaatgaaggtgttggagaatgcaatgaag 244  Q
    ||||| |||||||||||||||||||||||  ||||||||||    
T  8520344 tcaaagccaacacaatgaaggtgttggaggctgcaatgaag 8520384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #35
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 204 - 244
Target Start/End: Complemental strand, 15013520 - 15013480
Alignment:
Q  204 tcaaacccaacacaatgaaggtgttggagaatgcaatgaag 244  Q
    ||||| |||||||||||||||||||||||  ||||||||||    
T  15013520 tcaaagccaacacaatgaaggtgttggaggttgcaatgaag 15013480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #36
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 204 - 244
Target Start/End: Original strand, 35926330 - 35926370
Alignment:
Q  204 tcaaacccaacacaatgaaggtgttggagaatgcaatgaag 244  Q
    ||||| |||||||||||||||||||||||  ||||||||||    
T  35926330 tcaaagccaacacaatgaaggtgttggaggttgcaatgaag 35926370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 67; Significance: 1e-29; HSPs: 31)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 144 - 278
Target Start/End: Original strand, 52043127 - 52043261
Alignment:
Q  144 aagctttataaacactacacaaaccatatctctaggcaatgtggaactaaagccaccctttcaaacccaacacaatgaaggtgttggagaatgcaatgaa 243  Q
    ||||||||||||||||| ||| ||||||||| | |||||||||  |||||| |||||| |||| |||| | ||||||||||||||||||  |||||||||    
T  52043127 aagctttataaacactaaacagaccatatcttttggcaatgtgagactaaatccaccccttcacacccgatacaatgaaggtgttggaggctgcaatgaa 52043226  T
Q  244 gacaacccaaatgccgcaattaggaggctaggggc 278  Q
    |||||| ||||| ||||||||||| || |||||||    
T  52043227 gacaacacaaattccgcaattaggtggttaggggc 52043261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 139 - 279
Target Start/End: Original strand, 26942916 - 26943055
Alignment:
Q  139 tgccaaagctttataaacactacacaaaccatatctctaggcaatgtggaactaaagccaccctttcaaacccaacacaatgaaggtgttggagaatgca 238  Q
    |||| ||||||||||||||||||||| |||||||||||||||| ||||  ||||||  ||||  |||| |||||||||||| ||||||||| ||  ||||    
T  26942916 tgcctaagctttataaacactacacagaccatatctctaggca-tgtgagactaaattcacctcttcacacccaacacaataaaggtgttgaaggctgca 26943014  T
Q  239 atgaagacaacccaaatgccgcaattaggaggctaggggcg 279  Q
    |||||||||| |||||| | ||||||||| |||||||||||    
T  26943015 atgaagacaatccaaatactgcaattaggcggctaggggcg 26943055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 147 - 286
Target Start/End: Complemental strand, 48046409 - 48046269
Alignment:
Q  147 ctttataaacactacacaaaccatatctctaggcaatgtggaactaaagccaccc-tttcaaacccaacacaatgaaggtgttggagaatgcaatgaaga 245  Q
    |||| |||||||||||||  ||||||||||||||||||||| |||||| |||||| ||||| |||||||| | ||||||||||||||  ||||||||||     
T  48046409 ctttgtaaacactacacatgccatatctctaggcaatgtgggactaaatccacccctttcacacccaacatagtgaaggtgttggaggttgcaatgaagg 48046310  T
Q  246 caacccaaatgccgcaattaggaggctaggggcgaccgcaa 286  Q
    |||||| |||||  |||||||| |||||| || ||||||||    
T  48046309 caaccccaatgctacaattaggcggctagaggggaccgcaa 48046269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 189 - 279
Target Start/End: Original strand, 26942681 - 26942771
Alignment:
Q  189 actaaagccaccctttcaaacccaacacaatgaaggtgttggagaatgcaatgaagacaacccaaatgccgcaattaggaggctaggggcg 279  Q
    |||||| |||||| |||| ||||||||||||||| |||||||||  ||||||||||||||||||||| ||||||||||| |||||||||||    
T  26942681 actaaatccaccccttcacacccaacacaatgaatgtgttggaggttgcaatgaagacaacccaaataccgcaattaggtggctaggggcg 26942771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 147 - 278
Target Start/End: Original strand, 30491006 - 30491134
Alignment:
Q  147 ctttataaacactacacaaaccatatctctaggcaatgtggaactaaagccaccctttcaaacccaacacaatgaaggtgttggagaatgcaatgaagac 246  Q
    ||||||||||||  ||||  |||||| ||||||||||||||| ||||| |||||| |||| |||||||||| ||||||||||||||  |||||||||| |    
T  30491006 ctttataaacac--cacaggccatatatctaggcaatgtgga-ctaaatccaccccttcacacccaacacattgaaggtgttggaggctgcaatgaaggc 30491102  T
Q  247 aacccaaatgccgcaattaggaggctaggggc 278  Q
    ||||||  ||| ||||||||| ||||||||||    
T  30491103 aacccaggtgctgcaattaggcggctaggggc 30491134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 196 - 277
Target Start/End: Original strand, 26942473 - 26942554
Alignment:
Q  196 ccaccctttcaaacccaacacaatgaaggtgttggagaatgcaatgaagacaacccaaatgccgcaattaggaggctagggg 277  Q
    |||||| |||| ||||||||||||||| |||||||||  ||||||||||||||||||||| ||  ||||||| |||||||||    
T  26942473 ccaccccttcatacccaacacaatgaatgtgttggaggttgcaatgaagacaacccaaataccctaattaggcggctagggg 26942554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 144 - 272
Target Start/End: Original strand, 46332587 - 46332710
Alignment:
Q  144 aagctttataaacactacacaaaccatatctctaggcaatgtggaactaaagccaccctttcaaacccaacacaatgaaggtgttggagaatgcaatgaa 243  Q
    ||||||||||||||||||||||  ||| |||||| |     ||| |||||| |||||| || ||||||||  ||||||| |||||| ||  |||||||||    
T  46332587 aagctttataaacactacacaagacatgtctctaag-----tgggactaaatccaccccttaaaacccaatccaatgaacgtgttgaaggctgcaatgaa 46332681  T
Q  244 gacaacccaaatgccgcaattaggaggct 272  Q
    | |||||||||||||||||||||| ||||    
T  46332682 ggcaacccaaatgccgcaattaggcggct 46332710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 167 - 277
Target Start/End: Complemental strand, 22870685 - 22870575
Alignment:
Q  167 ccatatctctaggcaatgtggaactaaagccaccctttcaaacccaacacaatgaaggtgttggagaatgcaatgaagacaacccaaatgccgcaattag 266  Q
    ||||||||||| ||||||||| |||||| |||| | ||||||| | |||||||||| |||||| ||  |||||||||  ||||||| |||  ||||||||    
T  22870685 ccatatctctaagcaatgtgggactaaatccacaccttcaaactctacacaatgaatgtgttgaaggttgcaatgaaagcaacccagatggtgcaattag 22870586  T
Q  267 gaggctagggg 277  Q
    | |||||||||    
T  22870585 gcggctagggg 22870575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 182 - 264
Target Start/End: Original strand, 53738295 - 53738377
Alignment:
Q  182 atgtggaactaaagccaccctttcaaacccaacacaatgaaggtgttggagaatgcaatgaagacaacccaaatgccgcaatt 264  Q
    |||||| |||||| ||||||  ||||| |||||||||||||||||||||||  |||||||||| ||| ||||| |||||||||    
T  53738295 atgtgggactaaatccaccccctcaaagccaacacaatgaaggtgttggaggctgcaatgaaggcaaaccaaaggccgcaatt 53738377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 172 - 269
Target Start/End: Original strand, 3137021 - 3137118
Alignment:
Q  172 tctctaggcaatgtggaactaaagccaccctttcaaacccaacacaatgaaggtgttggagaatgcaatgaagacaacccaaatgccgcaattaggag 269  Q
    |||||||||||||||| |||||| |||||| ||| |||||| |||||||| | ||||||||  | |||||||| ||||| |||||||  |||||||||    
T  3137021 tctctaggcaatgtgggactaaatccacccattcgaacccagcacaatgaggatgttggaggctacaatgaaggcaacctaaatgccagaattaggag 3137118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 146 - 255
Target Start/End: Original strand, 23311521 - 23311629
Alignment:
Q  146 gctttataaacactacacaaaccatatctctaggcaatgtggaactaaagccaccctttcaaacccaacacaatgaaggtgttggagaatgcaatgaaga 245  Q
    |||||||||||||||||||  |||||||||||  |||||| | |||||| |||||| |||||||||||||| |  ||||||||||||  ||||| ||||     
T  23311521 gctttataaacactacacatgccatatctctaaacaatgtaggactaaatccaccccttcaaacccaacac-acaaaggtgttggaggctgcaaagaagg 23311619  T
Q  246 caacccaaat 255  Q
    ||| ||||||    
T  23311620 caaaccaaat 23311629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 179 - 276
Target Start/End: Original strand, 54595145 - 54595242
Alignment:
Q  179 gcaatgtggaactaaagccaccctttcaaacccaacacaatgaaggtgttggagaatgcaatgaagacaacccaaatgccgcaattaggaggctaggg 276  Q
    ||||||||| |||| | |||||| |||| ||||  |||||||||||||||||||  |||||||||| ||||  ||||||||||||||||  |||||||    
T  54595145 gcaatgtgggactatatccaccccttcacaccccgcacaatgaaggtgttggaggttgcaatgaaggcaacttaaatgccgcaattaggcagctaggg 54595242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 217 - 279
Target Start/End: Original strand, 3137285 - 3137347
Alignment:
Q  217 aatgaaggtgttggagaatgcaatgaagacaacccaaatgccgcaattaggaggctaggggcg 279  Q
    ||||||||||||||||  |||||||||| ||||| ||||| |||||| |||||||||||||||    
T  3137285 aatgaaggtgttggaggctgcaatgaaggcaacctaaatgtcgcaatcaggaggctaggggcg 3137347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 182 - 264
Target Start/End: Complemental strand, 15665170 - 15665087
Alignment:
Q  182 atgtggaactaaagccaccctttcaaacccaacacaatgaaggtgttggagaatgcaatgaagac-aacccaaatgccgcaatt 264  Q
    |||||| |||||| ||||||  ||||| |||||||||||||||||||||||  |||||||||| | |||||||| | |||||||    
T  15665170 atgtgggactaaatccaccccctcaaagccaacacaatgaaggtgttggaggctgcaatgaaggctaacccaaaggtcgcaatt 15665087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 182 - 265
Target Start/End: Original strand, 29669765 - 29669847
Alignment:
Q  182 atgtggaactaaagccaccctttcaaacccaacacaatgaaggtgttggagaatgcaatgaagacaacccaaatgccgcaatta 265  Q
    |||||| |||||| |||||| | |||| |||||||||||||||||||||||  |||||||||| | | ||||| ||||||||||    
T  29669765 atgtgggactaaatccacccct-caaagccaacacaatgaaggtgttggaggctgcaatgaaggctaaccaaaggccgcaatta 29669847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 182 - 265
Target Start/End: Original strand, 36558553 - 36558636
Alignment:
Q  182 atgtggaactaaagccaccctttcaaacccaacacaatgaaggtgttggagaatgcaatgaagacaacccaaatgccgcaatta 265  Q
    |||||| |||||| ||||||  ||||| |||||||| ||||||||||||||  ||| |||||| ||| ||||| ||||||||||    
T  36558553 atgtgggactaaatccaccccctcaaagccaacacagtgaaggtgttggaggttgctatgaaggcaaaccaaaggccgcaatta 36558636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 182 - 264
Target Start/End: Complemental strand, 43972372 - 43972290
Alignment:
Q  182 atgtggaactaaagccaccctttcaaacccaacacaatgaaggtgttggagaatgcaatgaagacaacccaaatgccgcaatt 264  Q
    |||||| ||||||  |||||  ||||| |||||||||||||||||||||||  |||||||||| |||  |||| |||||||||    
T  43972372 atgtgggactaaattcaccccctcaaaaccaacacaatgaaggtgttggaggctgcaatgaaggcaaatcaaaggccgcaatt 43972290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 182 - 244
Target Start/End: Original strand, 45427339 - 45427401
Alignment:
Q  182 atgtggaactaaagccaccctttcaaacccaacacaatgaaggtgttggagaatgcaatgaag 244  Q
    |||||| |||||| ||||||  ||||| |||||||||||||||||||||||  ||||||||||    
T  45427339 atgtgggactaaatccaccccctcaaagccaacacaatgaaggtgttggaggctgcaatgaag 45427401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 167 - 276
Target Start/End: Original strand, 3137706 - 3137814
Alignment:
Q  167 ccatatctctaggcaatgtggaactaaagccaccctttcaaacccaacacaatgaaggtgttggagaatgcaatgaagacaacccaaatgccgcaattag 266  Q
    ||||||||||||| ||||| | |||||| |||||  |||| ||| |||||||||||||||||| ||  |||||||||| ||||  |||| | ||||||||    
T  3137706 ccatatctctagggaatgtcggactaaatccaccaattcacacc-aacacaatgaaggtgttgcaggctgcaatgaaggcaacttaaatcctgcaattag 3137804  T
Q  267 gaggctaggg 276  Q
    | || |||||    
T  3137805 gtgggtaggg 3137814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 208 - 256
Target Start/End: Original strand, 44898835 - 44898883
Alignment:
Q  208 acccaacacaatgaaggtgttggagaatgcaatgaagacaacccaaatg 256  Q
    |||||||||||||||||||||||||  |||||||||| || ||||||||    
T  44898835 acccaacacaatgaaggtgttggaggctgcaatgaaggcagcccaaatg 44898883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 182 - 265
Target Start/End: Complemental strand, 991221 - 991138
Alignment:
Q  182 atgtggaactaaagccaccctttcaaacccaacacaatgaaggtgttggagaatgcaatgaagacaacccaaatgccgcaatta 265  Q
    |||||| |||||| ||||||  ||||| |||||||||||||||||||||||  |||||| ||| | | ||||| | ||||||||    
T  991221 atgtgggactaaatccaccccctcaaagccaacacaatgaaggtgttggaggctgcaattaaggctaaccaaaggtcgcaatta 991138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 182 - 265
Target Start/End: Original strand, 29669450 - 29669532
Alignment:
Q  182 atgtggaactaaagccaccctttcaaacccaacacaatgaaggtgttggagaatgcaatgaagacaacccaaatgccgcaatta 265  Q
    |||||| |||||| |||||| | |||| |||||||||||||||||||||||  |||||||||| | | ||||| || |||||||    
T  29669450 atgtgggactaaatccacccct-caaagccaacacaatgaaggtgttggaggctgcaatgaaggctaaccaaaggcagcaatta 29669532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 145 - 276
Target Start/End: Original strand, 54595427 - 54595558
Alignment:
Q  145 agctttataaacactacacaaaccatatctctaggcaatgtggaactaaagccaccctttcaaacccaacacaatgaaggtgttggagaatgcaatgaag 244  Q
    ||||||| || |||||||||| || | ||||||||||| |||| | |||  ||| || |||| | ||||||||||||||||||||| |  || ||||||     
T  54595427 agctttaaaagcactacacaagccgtgtctctaggcaacgtgggattaattccatcccttcacaaccaacacaatgaaggtgttggtggctgtaatgaaa 54595526  T
Q  245 acaacccaaatgccgcaattaggaggctaggg 276  Q
     |||| |||||||  || ||||| ||||||||    
T  54595527 gcaacacaaatgcaacacttaggcggctaggg 54595558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 189 - 260
Target Start/End: Complemental strand, 56509619 - 56509548
Alignment:
Q  189 actaaagccaccctttcaaacccaacacaatgaaggtgttggagaatgcaatgaagacaacccaaatgccgc 260  Q
    |||||| ||||||  ||||| ||||||||||||||||||||||   |||||||||| ||| ||||| |||||    
T  56509619 actaaatccaccccctcaaagccaacacaatgaaggtgttggaagctgcaatgaaggcaaaccaaaggccgc 56509548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 182 - 232
Target Start/End: Complemental strand, 50858029 - 50857979
Alignment:
Q  182 atgtggaactaaagccaccctttcaaacccaacacaatgaaggtgttggag 232  Q
    |||||| |||||| ||||||  ||||| |||||||||||||||||||||||    
T  50858029 atgtgggactaaatccaccccctcaaagccaacacaatgaaggtgttggag 50857979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 182 - 232
Target Start/End: Complemental strand, 50858345 - 50858295
Alignment:
Q  182 atgtggaactaaagccaccctttcaaacccaacacaatgaaggtgttggag 232  Q
    |||||| |||||| ||||||  ||||| |||||||||||||||||||||||    
T  50858345 atgtgggactaaatccaccccctcaaagccaacacaatgaaggtgttggag 50858295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 182 - 232
Target Start/End: Complemental strand, 53740199 - 53740149
Alignment:
Q  182 atgtggaactaaagccaccctttcaaacccaacacaatgaaggtgttggag 232  Q
    |||||| |||||| ||||||  ||||| |||||||||||||||||||||||    
T  53740199 atgtgggactaaatccaccccctcaaagccaacacaatgaaggtgttggag 53740149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 190 - 243
Target Start/End: Original strand, 45427031 - 45427084
Alignment:
Q  190 ctaaagccaccctttcaaacccaacacaatgaaggtgttggagaatgcaatgaa 243  Q
    ||||| ||||||  ||||| |||||||||||||||||||||||  |||||||||    
T  45427031 ctaaatccaccccctcaaagccaacacaatgaaggtgttggaggctgcaatgaa 45427084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 204 - 265
Target Start/End: Complemental strand, 49544328 - 49544267
Alignment:
Q  204 tcaaacccaacacaatgaaggtgttggagaatgcaatgaagacaacccaaatgccgcaatta 265  Q
    ||||| |||||||||| ||||||||||||  |||||||||| | | ||||| ||||||||||    
T  49544328 tcaaagccaacacaatcaaggtgttggaggctgcaatgaaggctaaccaaaggccgcaatta 49544267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 184 - 244
Target Start/End: Complemental strand, 43972054 - 43971994
Alignment:
Q  184 gtggaactaaagccaccctttcaaacccaacacaatgaaggtgttggagaatgcaatgaag 244  Q
    |||| |||||| ||||||  | ||| |||||||||||||||||||||||  ||||||||||    
T  43972054 gtgggactaaatccacccccttaaagccaacacaatgaaggtgttggaggctgcaatgaag 43971994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 180 - 232
Target Start/End: Complemental strand, 52214634 - 52214582
Alignment:
Q  180 caatgtggaactaaagccaccctttcaaacccaacacaatgaaggtgttggag 232  Q
    |||||||| |||||  ||||||  ||||| |||||||||||||||||||||||    
T  52214634 caatgtgggactaattccaccccctcaaagccaacacaatgaaggtgttggag 52214582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 64; Significance: 6e-28; HSPs: 22)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 144 - 275
Target Start/End: Original strand, 34250401 - 34250532
Alignment:
Q  144 aagctttataaacactacacaaaccatatctctaggcaatgtggaactaaagccaccctttcaaacccaacacaatgaaggtgttggagaatgcaatgaa 243  Q
    ||||||||| || ||||||||| | ||||||||| ||||||||| || |||  ||||| |||||||| |||||||| ||||||||||||  |||||||||    
T  34250401 aagctttattaaaactacacaatcaatatctctaagcaatgtgggacgaaattcaccccttcaaacctaacacaattaaggtgttggaggctgcaatgaa 34250500  T
Q  244 gacaacccaaatgccgcaattaggaggctagg 275  Q
    | ||||||||||| |||||||||| |||||||    
T  34250501 ggcaacccaaatgtcgcaattaggcggctagg 34250532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 144 - 279
Target Start/End: Complemental strand, 51917935 - 51917800
Alignment:
Q  144 aagctttataaacactacacaaaccatatctctaggcaatgtggaactaaagccaccctttcaaacccaacacaatgaaggtgttggagaatgcaatgaa 243  Q
    ||||||||||||||||||| |  ||||||||||||||||||| | |||||| ||||||||||| || ||||| |||||||| |||| ||  |||||||||    
T  51917935 aagctttataaacactacatatgccatatctctaggcaatgtaggactaaatccaccctttcacactcaacataatgaaggcgttgaaggttgcaatgaa 51917836  T
Q  244 gacaacccaaatgccgcaattaggaggctaggggcg 279  Q
    | ||||||||||||  ||||||||  ||||||||||    
T  51917835 ggcaacccaaatgcttcaattaggcagctaggggcg 51917800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 151 - 279
Target Start/End: Complemental strand, 662774 - 662646
Alignment:
Q  151 ataaacactacacaaaccatatctctaggcaatgtggaactaaagccaccctttcaaacccaacacaatgaaggtgttggagaatgcaatgaagacaacc 250  Q
    ||||||||||||||   |||||||||| | || |||| |||||| | |||| ||||||||||||||||| ||||||||||||  |||||||||| |||||    
T  662774 ataaacactacacaggtcatatctctaagaaaagtgggactaaatcgaccccttcaaacccaacacaataaaggtgttggaggctgcaatgaaggcaacc 662675  T
Q  251 caaatgccgcaattaggaggctaggggcg 279  Q
    |||||| |||||||||| | |||||||||    
T  662674 caaatggcgcaattaggcgactaggggcg 662646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 144 - 278
Target Start/End: Complemental strand, 54861580 - 54861446
Alignment:
Q  144 aagctttataaacactacacaaaccatatctctaggcaatgtggaactaaagccaccctttcaaacccaacacaatgaaggtgttggagaatgcaatgaa 243  Q
    |||||||||||||||| || |  |||||| || |||||| |||  |||||| |||||| |||| ||||||||||| |||||||||||||  |||||||||    
T  54861580 aagctttataaacactgcatatgccatatgtccaggcaaagtgagactaaatccaccccttcacacccaacacaacgaaggtgttggaggctgcaatgaa 54861481  T
Q  244 gacaacccaaatgccgcaattaggaggctaggggc 278  Q
    ||||||||  |||||||| ||||| ||||||||||    
T  54861480 gacaacccgtatgccgcagttaggcggctaggggc 54861446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 167 - 274
Target Start/End: Original strand, 39225097 - 39225208
Alignment:
Q  167 ccatatctctaggcaatgtggaactaaagccaccctttcaaacccaacacaatgaagg----tgttggagaatgcaatgaagacaacccaaatgccgcaa 262  Q
    |||||||||||||||||| || |||||| |||| | |||| |||||||||||||||||    ||||||||  |||| ||||| |||||||||||||||||    
T  39225097 ccatatctctaggcaatgcgggactaaacccacgccttcacacccaacacaatgaaggtgtatgttggaggctgcagtgaaggcaacccaaatgccgcaa 39225196  T
Q  263 ttaggaggctag 274  Q
    ||||| ||||||    
T  39225197 ttaggcggctag 39225208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 138 - 277
Target Start/End: Complemental strand, 25568558 - 25568419
Alignment:
Q  138 ctgccaaagctttataaacactacacaaaccatatctctaggcaatgtggaactaaagccaccctttcaaacccaacacaatgaaggtgttggagaatgc 237  Q
    ||||| ||| ||||||||||||||| |   ||| ||||||||||||||||  ||||| |||||| |||| ||||||||||  |||||||||||||  |||    
T  25568558 ctgcccaaggtttataaacactacaaaggtcatgtctctaggcaatgtggtgctaaacccaccccttcacacccaacacagagaaggtgttggaggctgc 25568459  T
Q  238 aatgaagacaacccaaatgccgcaattaggaggctagggg 277  Q
    |||| || ||||||||||| || ||| ||| | |||||||    
T  25568458 aatgtaggcaacccaaatgtcgtaataaggtgtctagggg 25568419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 138 - 276
Target Start/End: Complemental strand, 35035161 - 35035023
Alignment:
Q  138 ctgccaaagctttataaacactacacaaaccatatctctaggcaatgtggaactaaagccaccctttcaaacccaacacaatgaaggtgttggagaatgc 237  Q
    ||||| |||||||||||| |  |||||| ||||||||||| | ||||||  |||||  |||||| |||||||| |||||||||||||||||| ||  |||    
T  35035161 ctgcccaagctttataaatagaacacaagccatatctctaagaaatgtgagactaagtccaccccttcaaacctaacacaatgaaggtgttgaaggttgc 35035062  T
Q  238 aatgaagacaacccaaatgccgcaattaggaggctaggg 276  Q
    || |||| |||| |||||| ||||||  || ||||||||    
T  35035061 aacgaaggcaactcaaatgtcgcaatagggtggctaggg 35035023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 146 - 277
Target Start/End: Complemental strand, 351236 - 351102
Alignment:
Q  146 gctttataaacactacacaaaccatatctctaggcaatgtggaactaaagccaccctttcaaacccaacacaatgaagg---tgttggagaatgcaatga 242  Q
    |||||||||||||||||||   || |||| || ||||||||| ||||||||||||| ||||||| ||||||||||||||   | ||| ||  |||||| |    
T  351236 gctttataaacactacacatgtcacatctgtaagcaatgtgggactaaagccaccccttcaaactcaacacaatgaaggtattattgaaggctgcaatta 351137  T
Q  243 agacaacccaaatgccgcaattaggaggctagggg 277  Q
    || |||  ||||||||||||||||| | |||||||    
T  351136 aggcaaaacaaatgccgcaattaggcgactagggg 351102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 182 - 279
Target Start/End: Original strand, 14170086 - 14170184
Alignment:
Q  182 atgtggaactaaagccaccctttcaaacccaacacaatgaaggtgttggagaatgcaatgaagacaacccaaatgccgcaa-ttaggaggctaggggcg 279  Q
    |||||| |||||| ||| ||  ||||| ||||||||||||||||| |||||  |||||||||| ||| ||||||||||||| ||||| |||||||||||    
T  14170086 atgtgggactaaatccagcccctcaaagccaacacaatgaaggtgatggaggctgcaatgaaggcaaaccaaatgccgcaatttaggcggctaggggcg 14170184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 189 - 264
Target Start/End: Original strand, 24860154 - 24860229
Alignment:
Q  189 actaaagccaccctttcaaacccaacacaatgaaggtgttggagaatgcaatgaagacaacccaaatgccgcaatt 264  Q
    |||||| ||||||  ||||| |||||||||||||||||||||||  |||||||||| ||| ||||| |||||||||    
T  24860154 actaaatccaccccctcaaagccaacacaatgaaggtgttggaggctgcaatgaaggcaaaccaaaggccgcaatt 24860229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 138 - 232
Target Start/End: Original strand, 45016876 - 45016970
Alignment:
Q  138 ctgccaaagctttataaacactacacaaaccatatctctaggcaatgtggaactaaagccaccctttcaaacccaacacaatgaaggtgttggag 232  Q
    ||||| ||||||||||||||||||||||  |||||||  | ||||||||||| ||||  ||||| || | ||| |||||||||||||| ||||||    
T  45016876 ctgcccaagctttataaacactacacaagtcatatctaaaagcaatgtggaattaaattcacccatttacacctaacacaatgaaggtattggag 45016970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 180 - 244
Target Start/End: Original strand, 13769376 - 13769440
Alignment:
Q  180 caatgtggaactaaagccaccctttcaaacccaacacaatgaaggtgttggagaatgcaatgaag 244  Q
    |||||||| |||||| ||||||  ||||| |||||||||||||||||||||||  ||||||||||    
T  13769376 caatgtgggactaaatccaccccctcaaagccaacacaatgaaggtgttggaggctgcaatgaag 13769440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 180 - 244
Target Start/End: Complemental strand, 45443299 - 45443235
Alignment:
Q  180 caatgtggaactaaagccaccctttcaaacccaacacaatgaaggtgttggagaatgcaatgaag 244  Q
    |||||||| |||||| ||||||  ||||| |||||||||||||||||||||||  ||||||||||    
T  45443299 caatgtgggactaaatccaccccctcaaagccaacacaatgaaggtgttggaggctgcaatgaag 45443235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 182 - 265
Target Start/End: Complemental strand, 41380741 - 41380658
Alignment:
Q  182 atgtggaactaaagccaccctttcaaacccaacacaatgaaggtgttggagaatgcaatgaagacaacccaaatgccgcaatta 265  Q
    |||||| |||||| ||||||  ||||| |||||||||||||||||||||||  |||||||||| | | ||||| | ||||||||    
T  41380741 atgtgggactaaatccaccccctcaaagccaacacaatgaaggtgttggaggctgcaatgaaggctaaccaaaggtcgcaatta 41380658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 180 - 255
Target Start/End: Complemental strand, 46139251 - 46139176
Alignment:
Q  180 caatgtggaactaaagccaccctttcaaacccaacacaatgaaggtgttggagaatgcaatgaagacaacccaaat 255  Q
    |||||||||||||||  |||||  ||||| |||||||||||||| ||||||||  |||||||||||| | ||||||    
T  46139251 caatgtggaactaaattcaccccctcaaagccaacacaatgaagatgttggaggttgcaatgaagactaaccaaat 46139176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 182 - 244
Target Start/End: Original strand, 43101458 - 43101520
Alignment:
Q  182 atgtggaactaaagccaccctttcaaacccaacacaatgaaggtgttggagaatgcaatgaag 244  Q
    |||||| |||||| ||||||  ||||| |||||||||||||||||||||||  ||||||||||    
T  43101458 atgtgggactaaatccaccccctcaaagccaacacaatgaaggtgttggaggctgcaatgaag 43101520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 182 - 244
Target Start/End: Complemental strand, 54369056 - 54368994
Alignment:
Q  182 atgtggaactaaagccaccctttcaaacccaacacaatgaaggtgttggagaatgcaatgaag 244  Q
    |||||| |||||| ||||||  ||||| |||||||||||||||||||||||  ||||||||||    
T  54369056 atgtgggactaaatccaccccctcaaagccaacacaatgaaggtgttggaggctgcaatgaag 54368994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 189 - 244
Target Start/End: Original strand, 50203951 - 50204006
Alignment:
Q  189 actaaagccaccctttcaaacccaacacaatgaaggtgttggagaatgcaatgaag 244  Q
    |||||| ||||||  ||||| |||||||||||||||||||||||  ||||||||||    
T  50203951 actaaacccaccccctcaaagccaacacaatgaaggtgttggaggctgcaatgaag 50204006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 182 - 260
Target Start/End: Complemental strand, 3985790 - 3985712
Alignment:
Q  182 atgtggaactaaagccaccctttcaaacccaacacaatgaaggtgttggagaatgcaatgaagacaacccaaatgccgc 260  Q
    |||||| |||||| ||||||  ||||| |||||||| ||||||||||||||  ||| |||||| ||| ||||| |||||    
T  3985790 atgtgggactaaatccaccccctcaaagccaacacagtgaaggtgttggaggctgctatgaaggcaaaccaaaggccgc 3985712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 182 - 232
Target Start/End: Complemental strand, 4255527 - 4255477
Alignment:
Q  182 atgtggaactaaagccaccctttcaaacccaacacaatgaaggtgttggag 232  Q
    |||||| |||||| ||||||  ||||| |||||||||||||||||||||||    
T  4255527 atgtgggactaaatccaccccctcaaagccaacacaatgaaggtgttggag 4255477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 182 - 244
Target Start/End: Complemental strand, 4256251 - 4256189
Alignment:
Q  182 atgtggaactaaagccaccctttcaaacccaacacaatgaaggtgttggagaatgcaatgaag 244  Q
    |||||| |||||| ||||||  ||||| |||||||||| ||||||||||||  ||||||||||    
T  4256251 atgtgggactaaatccaccccctcaaagccaacacaataaaggtgttggaggctgcaatgaag 4256189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 182 - 232
Target Start/End: Complemental strand, 44573343 - 44573293
Alignment:
Q  182 atgtggaactaaagccaccctttcaaacccaacacaatgaaggtgttggag 232  Q
    |||||| |||||| ||||||  ||||| |||||||||||||||||||||||    
T  44573343 atgtgggactaaatccaccccctcaaagccaacacaatgaaggtgttggag 44573293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 64; Significance: 6e-28; HSPs: 26)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 138 - 273
Target Start/End: Complemental strand, 18183527 - 18183392
Alignment:
Q  138 ctgccaaagctttataaacactacacaaaccatatctctaggcaatgtggaactaaagccaccctttcaaacccaacacaatgaaggtgttggagaatgc 237  Q
    ||||| |||||||||||||||||||||| ||||||||| |||||||   | |||||| ||| ||  ||| |||||||||||||||||||||||||  |||    
T  18183527 ctgcccaagctttataaacactacacaagccatatctcaaggcaattcaggactaaatccatcccatcacacccaacacaatgaaggtgttggaggctgc 18183428  T
Q  238 aatgaagacaacccaaatgccgcaattaggaggcta 273  Q
    ||||||| |||| ||||||||||| ||||| |||||    
T  18183427 aatgaaggcaactcaaatgccgcacttaggcggcta 18183392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 148 - 286
Target Start/End: Original strand, 26760879 - 26761018
Alignment:
Q  148 tttataaacactacacaaaccatatctctaggcaatgtggaactaaagccaccctttcaaacccaacacaatgaaggtgttggagaatgcaatgaagaca 247  Q
    ||||||| ||| |||||  ||||||||||| ||||||||| |||||| |||||| ||||||| ||||||||| ||||||||| |   ||| || ||| ||    
T  26760879 tttataatcaccacacaggccatatctctaagcaatgtgggactaaacccaccccttcaaactcaacacaataaaggtgttgaatgctgccatcaaggca 26760978  T
Q  248 acccaaatgccgcaattaggaggctaggggc-gaccgcaa 286  Q
    ||||||||||| | |||||| |||||||||| ||||||||    
T  26760979 acccaaatgccacgattaggcggctaggggcagaccgcaa 26761018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 146 - 267
Target Start/End: Complemental strand, 21374045 - 21373915
Alignment:
Q  146 gctttataaacactacacaaaccatatctctaggcaatgtggaactaaagccaccc---------tttcaaacccaacacaatgaaggtgttggagaatg 236  Q
    |||||||||||||||||||  ||||||||||||||||||||| ||||||  |||||         ||||| |||||||||||| | ||||||||||  ||    
T  21374045 gctttataaacactacacaggccatatctctaggcaatgtgggactaaattcacccctttggccctttcacacccaacacaataatggtgttggaggctg 21373946  T
Q  237 caatgaagacaacccaaatgccgcaattagg 267  Q
    |||||||| |||| |||||||||||| ||||    
T  21373945 caatgaaggcaacacaaatgccgcaagtagg 21373915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 168 - 276
Target Start/End: Complemental strand, 43203588 - 43203479
Alignment:
Q  168 catatctctaggcaatgtggaactaaagccaccctttcaaacccaacacaa-tgaaggtgttggagaatgcaatgaagacaacccaaatgccgcaattag 266  Q
    ||||||||||| ||| |||| |||||| ||| || |||  ||||||||||| | |||||| |||||||||||||||||||||||||| |||| |||||||    
T  43203588 catatctctagacaacgtgggactaaatccaacccttcggacccaacacaaattaaggtgctggagaatgcaatgaagacaacccaactgccacaattag 43203489  T
Q  267 gaggctaggg 276  Q
      ||||||||    
T  43203488 tcggctaggg 43203479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 166 - 277
Target Start/End: Complemental strand, 1544185 - 1544073
Alignment:
Q  166 accatatctctaggcaatgtggaactaaagccaccctttcaaacccaacacaatgaaggtgttggagaatgcaatgaagaca--acccaaatgccgcaat 263  Q
    |||||||||  || |||||||| | |||| | |||||| || |||||||||||||||||||||||||   |||| |||||||  ||||||||||||||||    
T  1544185 accatatcttgagacaatgtgggaataaacctaccctt-cacacccaacacaatgaaggtgttggaggtggcaaagaagacataacccaaatgccgcaat 1544087  T
Q  264 taggaggctagggg 277  Q
    |||| |||||||||    
T  1544086 taggtggctagggg 1544073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 144 - 229
Target Start/End: Complemental strand, 14408044 - 14407958
Alignment:
Q  144 aagctttataaacactacacaaaccatatctctaggcaatgtggaactaaagcc-accctttcaaacccaacacaatgaaggtgttg 229  Q
    ||||||||||||||||||||| ||||||||||||| |||||||  || ||| || |||| |||| || |||||||||||||||||||    
T  14408044 aagctttataaacactacacagaccatatctctagacaatgtgagaccaaatccaaccccttcacactcaacacaatgaaggtgttg 14407958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 144 - 277
Target Start/End: Original strand, 5511851 - 5511983
Alignment:
Q  144 aagctttataaacactacacaaaccatatctctaggcaatgtggaactaaagccaccctttcaaacccaacacaatgaaggtgttggagaatgcaatgaa 243  Q
    |||||||||||||||||| ||| | ||||||||||||||| | | ||||||  ||||| |||| || |||||||||||||| ||||||   |  ||||||    
T  5511851 aagctttataaacactac-caagctatatctctaggcaatattggactaaatacaccccttcacacacaacacaatgaaggcgttggaagctataatgaa 5511949  T
Q  244 gacaacccaaatgccgcaattaggaggctagggg 277  Q
    | |||||| |||||||||||| ||  ||||||||    
T  5511950 ggcaaccctaatgccgcaatttggcagctagggg 5511983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 177 - 277
Target Start/End: Original strand, 9889407 - 9889508
Alignment:
Q  177 aggcaatgtggaactaaag-ccaccctttcaaacccaacacaatgaaggtgttggagaatgcaatgaagacaacccaaatgccgcaattaggaggctagg 275  Q
    ||||||||||| ||||||  ||| || |||| |||||| ||||||||| ||| ||||  |||||||||| ||||||||||||| ||||||||| ||||||    
T  9889407 aggcaatgtgggactaaaatccatcccttcacacccaatacaatgaagatgtcggaggttgcaatgaaggcaacccaaatgccacaattaggaagctagg 9889506  T
Q  276 gg 277  Q
    ||    
T  9889507 gg 9889508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 138 - 267
Target Start/End: Complemental strand, 39583561 - 39583432
Alignment:
Q  138 ctgccaaagctttataaacactacacaaaccatatctctaggcaatgtggaactaaagccaccctttcaaacccaacacaatgaaggtgttggagaatgc 237  Q
    ||||| || |||||||| |||||  ||  |||| |||||||||||   || |||||| |||||  |||| ||  ||||||||| | |||||||||| |||    
T  39583561 ctgcccaaactttataagcactaggcatgccatttctctaggcaacaagggactaaatccacctcttcacactgaacacaatggaagtgttggagactgc 39583462  T
Q  238 aatgaagacaacccaaatgccgcaattagg 267  Q
    ||||||| ||||||||||||||||||||||    
T  39583461 aatgaaggcaacccaaatgccgcaattagg 39583432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 182 - 265
Target Start/End: Original strand, 15820188 - 15820271
Alignment:
Q  182 atgtggaactaaagccaccctttcaaacccaacacaatgaaggtgttggagaatgcaatgaagacaacccaaatgccgcaatta 265  Q
    |||||| |||||| ||||||  ||||| |||||||||||||||||||||||  |||||| ||| ||| ||||| ||||||||||    
T  15820188 atgtgggactaaatccaccccctcaaagccaacacaatgaaggtgttggaggctgcaataaaggcaaaccaaaggccgcaatta 15820271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 175 - 266
Target Start/End: Complemental strand, 33070446 - 33070355
Alignment:
Q  175 ctaggcaatgtggaactaaagccaccctttcaaacccaacacaatgaaggtgttggagaatgcaatgaagacaacccaaatgccgcaattag 266  Q
    |||| ||||||||| |||||  ||||   ||| |||||||| |||||||||| || || |||||||| ||||||||||||||||||||||||    
T  33070446 ctagacaatgtggatctaaattcacctcctcacacccaacataatgaaggtgctgaaggatgcaatggagacaacccaaatgccgcaattag 33070355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 182 - 264
Target Start/End: Original strand, 5424843 - 5424925
Alignment:
Q  182 atgtggaactaaagccaccctttcaaacccaacacaatgaaggtgttggagaatgcaatgaagacaacccaaatgccgcaatt 264  Q
    |||||| |||||| ||||||| |||||  ||||||||||||||||||||||  ||||||||||  || ||||| |||||||||    
T  5424843 atgtgggactaaacccaccctctcaaaggcaacacaatgaaggtgttggaggctgcaatgaaggaaaaccaaaggccgcaatt 5424925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 170 - 232
Target Start/End: Original strand, 11339771 - 11339833
Alignment:
Q  170 tatctctaggcaatgtggaactaaagccaccctttcaaacccaacacaatgaaggtgttggag 232  Q
    |||||||||||| ||||| |||||| ||||||||||  ||| |||||||||||||||||||||    
T  11339771 tatctctaggcagtgtgggactaaatccaccctttcgcacctaacacaatgaaggtgttggag 11339833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 204 - 264
Target Start/End: Original strand, 43688531 - 43688591
Alignment:
Q  204 tcaaacccaacacaatgaaggtgttggagaatgcaatgaagacaacccaaatgccgcaatt 264  Q
    ||||| |||||| ||||||||||||||||  |||||||||||||| ||||| |||||||||    
T  43688531 tcaaagccaacataatgaaggtgttggaggctgcaatgaagacaaaccaaaggccgcaatt 43688591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 169 - 232
Target Start/End: Original strand, 3003981 - 3004044
Alignment:
Q  169 atatctctaggcaatgtggaactaaagccaccctttcaaacccaacacaatgaaggtgttggag 232  Q
    ||||||||||||| ||||| |||||| ||| ||  ||| |||||||||||||||||||||||||    
T  3003981 atatctctaggcattgtgggactaaacccatcccctcacacccaacacaatgaaggtgttggag 3004044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 237 - 276
Target Start/End: Original strand, 26580192 - 26580231
Alignment:
Q  237 caatgaagacaacccaaatgccgcaattaggaggctaggg 276  Q
    ||||||||||||||||||||||||||||||| ||||||||    
T  26580192 caatgaagacaacccaaatgccgcaattaggcggctaggg 26580231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 182 - 244
Target Start/End: Original strand, 18901951 - 18902013
Alignment:
Q  182 atgtggaactaaagccaccctttcaaacccaacacaatgaaggtgttggagaatgcaatgaag 244  Q
    |||||| |||||| ||||||  ||||| |||||||||||||||||||||||  ||||||||||    
T  18901951 atgtgggactaaatccaccccctcaaagccaacacaatgaaggtgttggaggctgcaatgaag 18902013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 167 - 267
Target Start/End: Complemental strand, 14522532 - 14522432
Alignment:
Q  167 ccatatctctaggcaatgtggaactaaagccaccctttcaaacccaacacaatgaaggtgttggagaatgcaatgaagacaacccaaatgccgcaattag 266  Q
    |||||| |||| ||||||||| | |||| ||| || || | ||||| |||||||||||| ||||||  ||||||||| ||||| |||||||| | |||||    
T  14522532 ccatatatctatgcaatgtgggattaaatccagccctttacacccatcacaatgaaggtattggaggctgcaatgaatacaactcaaatgccactattag 14522433  T
Q  267 g 267  Q
    |    
T  14522432 g 14522432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 180 - 232
Target Start/End: Original strand, 21213970 - 21214022
Alignment:
Q  180 caatgtggaactaaagccaccctttcaaacccaacacaatgaaggtgttggag 232  Q
    |||||||| |||||| ||||||  ||||| |||||||||||||||||||||||    
T  21213970 caatgtgggactaaatccaccccctcaaagccaacacaatgaaggtgttggag 21214022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 189 - 244
Target Start/End: Complemental strand, 7877854 - 7877799
Alignment:
Q  189 actaaagccaccctttcaaacccaacacaatgaaggtgttggagaatgcaatgaag 244  Q
    |||||| ||||||  ||||| |||||||||||||| ||||||||| ||||||||||    
T  7877854 actaaatccaccccctcaaagccaacacaatgaagatgttggagactgcaatgaag 7877799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 190 - 265
Target Start/End: Complemental strand, 17509118 - 17509043
Alignment:
Q  190 ctaaagccaccctttcaaacccaacacaatgaaggtgttggagaatgcaatgaagacaacccaaatgccgcaatta 265  Q
    ||||| ||||||  ||||| |||||||||||||||||||||||  |||||||||| | | ||||| | ||||||||    
T  17509118 ctaaatccaccccctcaaagccaacacaatgaaggtgttggaggctgcaatgaaggctaaccaaaggtcgcaatta 17509043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 182 - 232
Target Start/End: Original strand, 3976558 - 3976608
Alignment:
Q  182 atgtggaactaaagccaccctttcaaacccaacacaatgaaggtgttggag 232  Q
    |||||| |||||| ||||||  ||||| |||||||||||||||||||||||    
T  3976558 atgtgggactaaatccaccccctcaaagccaacacaatgaaggtgttggag 3976608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 182 - 232
Target Start/End: Complemental strand, 43169259 - 43169209
Alignment:
Q  182 atgtggaactaaagccaccctttcaaacccaacacaatgaaggtgttggag 232  Q
    |||||| |||||| ||||||  ||||| |||||||||||||||||||||||    
T  43169259 atgtgggactaaatccaccccctcaaagccaacacaatgaaggtgttggag 43169209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 203 - 276
Target Start/End: Original strand, 45636302 - 45636376
Alignment:
Q  203 ttcaaacccaacacaatgaaggtgttggagaatgc-aatgaagacaacccaaatgccgcaattaggaggctaggg 276  Q
    |||| ||||||||||||||||||||| |||| ||| ||| ||| || ||||||||||||||| ||| | ||||||    
T  45636302 ttcatacccaacacaatgaaggtgtttgagactgcaaatcaaggcaccccaaatgccgcaataaggcgtctaggg 45636376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 182 - 267
Target Start/End: Original strand, 20135069 - 20135153
Alignment:
Q  182 atgtggaactaaagccaccctttcaaacccaacacaatgaaggtgttggagaatgcaatgaagacaacccaaatgccgcaattagg 267  Q
    |||||| |||||| | |||||| || ||||| | ||||||||||||||||   |||||||||| |||| |||||||| ||||||||    
T  20135069 atgtgggactaaatcaaccctt-cacacccagcgcaatgaaggtgttggaatctgcaatgaaggcaacacaaatgccacaattagg 20135153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 172 - 224
Target Start/End: Complemental strand, 35872902 - 35872850
Alignment:
Q  172 tctctaggcaatgtggaactaaagccaccctttcaaacccaacacaatgaagg 224  Q
    ||||||| |||||||| | |||| |||||| |||| |||||||||||||||||    
T  35872902 tctctagtcaatgtgggaataaatccaccccttcacacccaacacaatgaagg 35872850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 53; Significance: 2e-21; HSPs: 21)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 167 - 279
Target Start/End: Original strand, 1205936 - 1206048
Alignment:
Q  167 ccatatctctaggcaatgtggaactaaagccaccctttcaaacccaacacaatgaaggtgttggagaatgcaatgaagacaacccaaatgccgcaattag 266  Q
    ||||||||||| ||| ||  | |||||| |||||| |||| ||| ||||| ||||||||| |||||  |||||||||| |||||||||||||||||||||    
T  1205936 ccatatctctaagcattgatggactaaatccaccccttcacacctaacacgatgaaggtgctggaggctgcaatgaaggcaacccaaatgccgcaattag 1206035  T
Q  267 gaggctaggggcg 279  Q
    | |||||||||||    
T  1206036 gcggctaggggcg 1206048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 144 - 267
Target Start/End: Complemental strand, 18286940 - 18286817
Alignment:
Q  144 aagctttataaacactacacaaaccatatctctaggcaatgtggaactaaagccaccctttcaaacccaacacaatgaaggtgttggagaatgcaatgaa 243  Q
    ||||||||||| ||||||| |  ||||||||||||| ||||||| |||||| | |||| |||| |||||||||  |||||||||||||| ||||||||||    
T  18286940 aagctttataa-cactacataggccatatctctaggaaatgtgggactaaatcaaccccttcacacccaacacggtgaaggtgttggaggatgcaatgaa 18286842  T
Q  244 gacaaccc-aaatgccgcaattagg 267  Q
      |||||| ||||||||||||||||    
T  18286841 cccaacccaaaatgccgcaattagg 18286817  T

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Target: chr6; HSP #3
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 147 - 267
Target Start/End: Complemental strand, 9237214 - 9237091
Alignment:
Q  147 ctttataaacactacacaaaccatatc---tctaggcaatgtggaactaaagccaccctttcaaacccaacacaatgaaggtgttggagaatgcaatgaa 243  Q
    ||||||||||||||||| | ||||||    || |||||||||||||||||| ||||   |||| || ||||||||||||||||||||||| |||||||||    
T  9237214 ctttataaacactacacgagccatataatatcgaggcaatgtggaactaaatccactacttcacacacaacacaatgaaggtgttggagagtgcaatgaa 9237115  T
Q  244 gacaacccaaatgccgcaattagg 267  Q
    | |||  ||||| |||||||||||    
T  9237114 ggcaagacaaataccgcaattagg 9237091  T

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Target: chr6; HSP #4
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 189 - 278
Target Start/End: Original strand, 9602081 - 9602170
Alignment:
Q  189 actaaagccaccctttcaaacccaacacaatgaaggtgttggagaatgcaatgaagacaacccaaatgccgcaattaggaggctaggggc 278  Q
    |||||| |||||| |||| ||||||||||||||||||||||||   || ||||||| ||| |||||||| ||||||||| ||||||||||    
T  9602081 actaaatccaccccttcacacccaacacaatgaaggtgttggaagctggaatgaaggcaatccaaatgctgcaattaggcggctaggggc 9602170  T

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Target: chr6; HSP #5
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 189 - 277
Target Start/End: Original strand, 31967 - 32055
Alignment:
Q  189 actaaagccaccctttcaaacccaacacaatgaaggtgttggagaatgcaatgaagacaacccaaatgccgcaattaggaggctagggg 277  Q
    |||||| ||||||  ||||| |||||| ||||||||||||||||| |||||||||| ||||  |||||||||||||||| | |||||||    
T  31967 actaaatccaccccctcaaagccaacaaaatgaaggtgttggagactgcaatgaaggcaacttaaatgccgcaattaggtgactagggg 32055  T

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Target: chr6; HSP #6
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 148 - 244
Target Start/End: Original strand, 9156154 - 9156250
Alignment:
Q  148 tttataaacactacacaaaccatatctctaggcaatgtggaactaaagccaccctttcaaacccaacacaatgaaggtgttggagaatgcaatgaag 244  Q
    |||||||||||||||||  | ||||||| | || |||||| | |||| |||||| |||||||| |||||| |||||||||||||| |||||||||||    
T  9156154 tttataaacactacacatgctatatctcaaagcgatgtgggaataaatccaccccttcaaacctaacacagtgaaggtgttggaggatgcaatgaag 9156250  T

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Target: chr6; HSP #7
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 196 - 277
Target Start/End: Original strand, 1205651 - 1205732
Alignment:
Q  196 ccaccctttcaaacccaacacaatgaaggtgttggagaatgcaatgaagacaacccaaatgccgcaattaggaggctagggg 277  Q
    |||||| |||| ||||||||||||||| |||||| ||  ||||||||||  |||||||||||| |||||||| |||||||||    
T  1205651 ccaccccttcacacccaacacaatgaaagtgttgtaggctgcaatgaaggaaacccaaatgccacaattaggcggctagggg 1205732  T

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Target: chr6; HSP #8
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 138 - 223
Target Start/End: Original strand, 1206222 - 1206307
Alignment:
Q  138 ctgccaaagctttataaacactacacaaaccatatctctaggcaatgtggaactaaagccaccctttcaaacccaacacaatgaag 223  Q
    ||||| |||||||||||||||||||||   |||||||||||| ||||||| ||||||  || || |||| ||||||||||||||||    
T  1206222 ctgcctaagctttataaacactacacaggacatatctctaggaaatgtgggactaaattcatcccttcacacccaacacaatgaag 1206307  T

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Target: chr6; HSP #9
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 188 - 279
Target Start/End: Original strand, 130760 - 130853
Alignment:
Q  188 aactaaagccaccctttcaaacccaacacaatgaagg-tgttggagaatgcaatgaagacaa-cccaaatgccgcaattaggaggctaggggcg 279  Q
    ||||||| |||||| |||| ||||||||||||||||| ||||||||  |||||||||| ||| |||| |||| ||| ||||| |||||||||||    
T  130760 aactaaatccaccccttcacacccaacacaatgaaggttgttggaggctgcaatgaaggcaaccccatatgctgcagttaggcggctaggggcg 130853  T

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Target: chr6; HSP #10
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 196 - 279
Target Start/End: Complemental strand, 9216838 - 9216755
Alignment:
Q  196 ccaccctttcaaacccaacacaatgaaggtgttggagaatgcaatgaagacaacccaaatgccgcaattaggaggctaggggcg 279  Q
    |||||| |||| ||| | ||||||||| ||||||| || ||||||||||||||| |||||||| |||||| |  ||||||||||    
T  9216838 ccaccccttcacaccaagcacaatgaatgtgttggtgactgcaatgaagacaacacaaatgccacaattatgctgctaggggcg 9216755  T

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Target: chr6; HSP #11
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 168 - 239
Target Start/End: Original strand, 12308564 - 12308635
Alignment:
Q  168 catatctctaggcaatgtggaactaaagccaccctttcaaacccaacacaatgaaggtgttggagaatgcaa 239  Q
    ||||| |||| | ||||||  |||||| ||||| |||||||| |||||||||||||||||||||| ||||||    
T  12308564 catatttctaagtaatgtgagactaaatccaccttttcaaactcaacacaatgaaggtgttggaggatgcaa 12308635  T

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Target: chr6; HSP #12
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 182 - 244
Target Start/End: Original strand, 10418425 - 10418487
Alignment:
Q  182 atgtggaactaaagccaccctttcaaacccaacacaatgaaggtgttggagaatgcaatgaag 244  Q
    |||||| |||||| ||||||  ||||| |||||||||||||||||||||||  ||||||||||    
T  10418425 atgtgggactaaatccaccccctcaaagccaacacaatgaaggtgttggaggctgcaatgaag 10418487  T

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Target: chr6; HSP #13
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 182 - 264
Target Start/End: Original strand, 12134570 - 12134652
Alignment:
Q  182 atgtggaactaaagccaccctttcaaacccaacacaatgaaggtgttggagaatgcaatgaagacaacccaaatgccgcaatt 264  Q
    |||||| |||||  ||||||  ||||| |||||||||||||||| ||||||  |||||||||| ||| ||||| |||||||||    
T  12134570 atgtgggactaagtccaccccgtcaaagccaacacaatgaaggtattggaggctgcaatgaaggcaaaccaaaggccgcaatt 12134652  T

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Target: chr6; HSP #14
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 147 - 276
Target Start/End: Complemental strand, 16509829 - 16509699
Alignment:
Q  147 ctttataaacactacacaaaccatatctctaggcaatgtggaactaaagccaccctttcaaacccaacac-aatgaaggtgttggagaatgcaatgaaga 245  Q
    |||||||| ||||||  || |||| ||| |||||||||||| |||||| |||||| |||| | ||| ||| |||||||| |||| |   ||||||||||     
T  16509829 ctttataagcactacttaagccatgtctttaggcaatgtgggactaaatccacccgttcacatccatcacaaatgaaggcgttgaaagctgcaatgaagg 16509730  T
Q  246 caacccaaatgccgcaattaggaggctaggg 276  Q
    ||||||||||| |||||| |||  |||||||    
T  16509729 caacccaaatgtcgcaataaggcagctaggg 16509699  T

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Target: chr6; HSP #15
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 182 - 244
Target Start/End: Original strand, 24055196 - 24055258
Alignment:
Q  182 atgtggaactaaagccaccctttcaaacccaacacaatgaaggtgttggagaatgcaatgaag 244  Q
    |||||| |||||| ||||||  ||||| |||||||||||||||||||||||  ||||||||||    
T  24055196 atgtgggactaaatccaccccctcaaagccaacacaatgaaggtgttggaggctgcaatgaag 24055258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 182 - 243
Target Start/End: Complemental strand, 1409028 - 1408967
Alignment:
Q  182 atgtggaactaaagccaccctttcaaacccaacacaatgaaggtgttggagaatgcaatgaa 243  Q
    |||||| |||||| ||||||  ||||| |||||||||||||||||||||||  |||||||||    
T  1409028 atgtgggactaaatccaccccctcaaagccaacacaatgaaggtgttggaggctgcaatgaa 1408967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 189 - 254
Target Start/End: Complemental strand, 32215918 - 32215853
Alignment:
Q  189 actaaagccaccctttcaaacccaacacaatgaaggtgttggagaatgcaatgaagacaacccaaa 254  Q
    |||||| ||||||| ||||| |||||| ||||||||||||||||  |||||||||| ||| |||||    
T  32215918 actaaatccaccctctcaaaaccaacataatgaaggtgttggaggctgcaatgaaggcaaaccaaa 32215853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 182 - 265
Target Start/End: Complemental strand, 19054510 - 19054427
Alignment:
Q  182 atgtggaactaaagccaccctttcaaacccaacacaatgaaggtgttggagaatgcaatgaagacaacccaaatgccgcaatta 265  Q
    |||||| |||||  ||||||  ||||| |||||||||||||||||||||||  |||||||||| | | ||||| | ||||||||    
T  19054510 atgtgggactaattccaccccctcaaagccaacacaatgaaggtgttggaggctgcaatgaaggctaaccaaaggtcgcaatta 19054427  T

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Target: chr6; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 170 - 231
Target Start/End: Original strand, 5854929 - 5854990
Alignment:
Q  170 tatctctaggcaatgtggaactaaagccaccctttcaaacccaacacaatgaaggtgttgga 231  Q
    ||||||||||||| |||||||||||  |||   |||| ||||||||||||||| ||||||||    
T  5854929 tatctctaggcaacgtggaactaaattcactgcttcacacccaacacaatgaaagtgttgga 5854990  T

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Target: chr6; HSP #20
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 180 - 244
Target Start/End: Original strand, 1744927 - 1744991
Alignment:
Q  180 caatgtggaactaaagccaccctttcaaacccaacacaatgaaggtgttggagaatgcaatgaag 244  Q
    |||||||| |||||  ||||||  ||||| | |||||||||||||||||||||  ||||||||||    
T  1744927 caatgtgggactaactccaccccctcaaagcaaacacaatgaaggtgttggaggctgcaatgaag 1744991  T

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Target: chr6; HSP #21
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 180 - 232
Target Start/End: Original strand, 10733523 - 10733575
Alignment:
Q  180 caatgtggaactaaagccaccctttcaaacccaacacaatgaaggtgttggag 232  Q
    |||||||| |||||| ||||||  ||||| |||||||||||||| ||||||||    
T  10733523 caatgtgggactaaatccaccccctcaaagccaacacaatgaagatgttggag 10733575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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