View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15984_low_2 (Length: 711)
Name: NF15984_low_2
Description: NF15984
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15984_low_2 |
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Alignment Details
Target: chr8 (Bit Score: 157; Significance: 4e-83; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 157; E-Value: 4e-83
Query Start/End: Original strand, 379 - 574
Target Start/End: Original strand, 44515056 - 44515260
Alignment:
| Q |
379 |
ttatcatatattccttgaacctagttacattctgtatttaatctaagggtatgagtatttggggcccattgttcttaatgtagttgtttggaaaatatat |
478 |
Q |
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| T |
44515056 |
ttatcatatattccttgaacctagttacattctgtatttaatctaagggtatgagtatttgggacccattgttcttaatgtagttgtttggaaaatatat |
44515155 |
T |
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| Q |
479 |
ttaatttaagattaggtcaattttgaggaaaaaattatttaaggaggg---------gaggatgtaacaccccacattactatctctataaataattttg |
569 |
Q |
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| T |
44515156 |
ttaatttaagattaggtcaattttgaggacaaaattatttaagggggggggggacccggggatgtaacaccccacattactatctctataaataattttg |
44515255 |
T |
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| Q |
570 |
atagg |
574 |
Q |
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||||| |
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| T |
44515256 |
atagg |
44515260 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 632 - 691
Target Start/End: Original strand, 44515318 - 44515377
Alignment:
| Q |
632 |
ctagacttggtgtttggttgaattaaacctgttctagcttgctattgttgctcatgacca |
691 |
Q |
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| T |
44515318 |
ctagacttggtgtttagttgaattaaacctgttctagcttgctattgttgcttatgacca |
44515377 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 540 - 574
Target Start/End: Original strand, 44509645 - 44509679
Alignment:
| Q |
540 |
cccacattactatctctataaataattttgatagg |
574 |
Q |
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| T |
44509645 |
cccacattactatctctataaataactttgatagg |
44509679 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 136; Significance: 1e-70; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 136; E-Value: 1e-70
Query Start/End: Original strand, 215 - 382
Target Start/End: Original strand, 1140404 - 1140570
Alignment:
| Q |
215 |
ccatctctctctagtgtgaatgtttcttttttaatatcaaaagagaaatacatgtgaaagttagtttgagtcatccttgcaatcttcttctaaaaccagt |
314 |
Q |
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| T |
1140404 |
ccatctctctctagtgtgaatgtttcttttttaatatcaaaagagaaattcatgtgaaagttagtttgagtcatccttgcaatcttctcataaaatcagt |
1140503 |
T |
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| Q |
315 |
tcatttggttgtagtccctgcatccaatcaatgacaaccaaatagtttagaaagaaagaaacagttat |
382 |
Q |
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| T |
1140504 |
tcatttggttgtagtccctgcatccaatcaatgacaaccaaatag-ttataaagaaagaaacatttat |
1140570 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 86; E-Value: 1e-40
Query Start/End: Original strand, 111 - 216
Target Start/End: Original strand, 1140251 - 1140356
Alignment:
| Q |
111 |
atttaatggacggtttcttttcgcctatggttaaaggtgaaaggccgacgtttcaaagacaactgctgtgcggattctgcagcaacagagacggctgtac |
210 |
Q |
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| T |
1140251 |
atttaatggacggtttcttttcgcctatggttaaaggtgaaaggtcgacgtttcaaagacaactgctgtgcggattctgcagcaacggagatggttgtac |
1140350 |
T |
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| Q |
211 |
aattcc |
216 |
Q |
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| |||| |
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| T |
1140351 |
atttcc |
1140356 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 76; E-Value: 9e-35
Query Start/End: Original strand, 10 - 109
Target Start/End: Original strand, 1139624 - 1139723
Alignment:
| Q |
10 |
gtgagatgaataaaatgatcttaaaattcaaaagagaatcccaaatgacaatgaagattcataccagttttgaaattgttaatcgtatataattgaagaa |
109 |
Q |
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|||| ||||||||||| |||||||||||||||||| |||| |||||||||||||||||||||| || ||||||||||||||||||||||||||||||||| |
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| T |
1139624 |
gtgatatgaataaaataatcttaaaattcaaaagaaaatctcaaatgacaatgaagattcatatcaattttgaaattgttaatcgtatataattgaagaa |
1139723 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 37; Significance: 0.00000000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 530 - 574
Target Start/End: Original strand, 26505297 - 26505341
Alignment:
| Q |
530 |
gatgtaacaccccacattactatctctataaataattttgatagg |
574 |
Q |
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| T |
26505297 |
gatgtaacatcccatattactatctctataaataattttgatagg |
26505341 |
T |
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