View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15984_low_23 (Length: 313)

Name: NF15984_low_23
Description: NF15984
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15984_low_23
NF15984_low_23
[»] chr8 (12 HSPs)
chr8 (210-287)||(20003865-20003942)
chr8 (210-275)||(2952473-2952538)
chr8 (210-275)||(5860996-5861061)
chr8 (209-287)||(37430290-37430368)
chr8 (210-275)||(30883110-30883175)
chr8 (209-275)||(3048774-3048840)
chr8 (212-276)||(41878167-41878231)
chr8 (220-276)||(45472201-45472257)
chr8 (216-276)||(42600590-42600650)
chr8 (216-262)||(10917200-10917246)
chr8 (208-258)||(45294597-45294647)
chr8 (219-276)||(23606855-23606912)
[»] chr5 (15 HSPs)
chr5 (210-287)||(15480218-15480295)
chr5 (210-287)||(19523093-19523170)
chr5 (213-287)||(36188008-36188082)
chr5 (209-276)||(31881590-31881657)
chr5 (214-275)||(34756615-34756676)
chr5 (210-276)||(16592845-16592911)
chr5 (210-276)||(30853266-30853332)
chr5 (209-278)||(2274797-2274866)
chr5 (210-273)||(22987470-22987534)
chr5 (206-276)||(31194767-31194837)
chr5 (210-276)||(16199026-16199092)
chr5 (216-276)||(27923891-27923951)
chr5 (210-258)||(8433593-8433641)
chr5 (222-276)||(16799556-16799610)
chr5 (222-276)||(38869593-38869647)
[»] chr1 (25 HSPs)
chr1 (210-287)||(14146205-14146282)
chr1 (210-287)||(41697268-41697345)
chr1 (210-287)||(3406323-3406400)
chr1 (210-287)||(3440420-3440497)
chr1 (214-287)||(6888473-6888546)
chr1 (218-287)||(6771704-6771773)
chr1 (210-275)||(44655539-44655604)
chr1 (205-287)||(16139955-16140037)
chr1 (210-275)||(27906949-27907014)
chr1 (209-276)||(10912094-10912161)
chr1 (210-256)||(50880568-50880614)
chr1 (209-276)||(23181710-23181777)
chr1 (216-276)||(13913716-13913776)
chr1 (216-276)||(40502024-40502084)
chr1 (222-268)||(5027982-5028028)
chr1 (219-276)||(1367111-1367168)
chr1 (161-210)||(23415318-23415367)
chr1 (219-262)||(44895476-44895519)
chr1 (219-276)||(9173255-9173312)
chr1 (161-206)||(23700666-23700711)
chr1 (207-257)||(5315791-5315841)
chr1 (222-276)||(27559459-27559513)
chr1 (219-276)||(17168778-17168835)
chr1 (210-253)||(34246890-34246930)
chr1 (222-275)||(51607674-51607727)
[»] chr7 (14 HSPs)
chr7 (210-287)||(12596418-12596495)
chr7 (208-287)||(10955376-10955455)
chr7 (210-275)||(18777019-18777084)
chr7 (211-276)||(28749582-28749647)
chr7 (205-276)||(29076925-29076998)
chr7 (219-276)||(47985202-47985259)
chr7 (151-206)||(14236862-14236917)
chr7 (219-262)||(19691906-19691949)
chr7 (221-276)||(48984077-48984132)
chr7 (219-276)||(24525918-24525975)
chr7 (216-276)||(20091514-20091573)
chr7 (222-276)||(23551305-23551359)
chr7 (219-276)||(25010262-25010319)
chr7 (210-253)||(40357589-40357629)
[»] chr3 (28 HSPs)
chr3 (210-287)||(50258723-50258800)
chr3 (208-287)||(42098696-42098775)
chr3 (209-287)||(47467581-47467658)
chr3 (209-287)||(53149446-53149524)
chr3 (210-287)||(21582668-21582745)
chr3 (210-275)||(36716276-36716341)
chr3 (210-275)||(38681348-38681413)
chr3 (211-276)||(3954852-3954917)
chr3 (210-275)||(27078819-27078884)
chr3 (210-275)||(27084616-27084681)
chr3 (210-276)||(13795187-13795253)
chr3 (209-275)||(54619454-54619520)
chr3 (208-257)||(29620618-29620667)
chr3 (226-275)||(36605862-36605911)
chr3 (219-276)||(1148354-1148411)
chr3 (210-273)||(18372033-18372095)
chr3 (219-273)||(48156951-48157005)
chr3 (219-276)||(9878919-9878976)
chr3 (219-276)||(34290874-34290931)
chr3 (219-276)||(53507117-53507174)
chr3 (220-276)||(43207474-43207530)
chr3 (216-276)||(50939468-50939528)
chr3 (221-276)||(44708293-44708348)
chr3 (164-206)||(5746975-5747017)
chr3 (164-206)||(5783934-5783976)
chr3 (220-276)||(8074087-8074143)
chr3 (206-259)||(33426346-33426399)
chr3 (220-276)||(54407391-54407447)
[»] chr2 (21 HSPs)
chr2 (210-287)||(7162677-7162754)
chr2 (210-287)||(3952899-3952976)
chr2 (210-275)||(3155003-3155068)
chr2 (212-275)||(6964794-6964857)
chr2 (209-276)||(12337689-12337756)
chr2 (210-275)||(4505679-4505744)
chr2 (210-275)||(34693147-34693212)
chr2 (210-275)||(34715559-34715624)
chr2 (211-276)||(40635963-40636028)
chr2 (210-273)||(3399509-3399572)
chr2 (151-209)||(37178772-37178830)
chr2 (210-276)||(41213928-41213994)
chr2 (214-275)||(8907330-8907391)
chr2 (159-210)||(20523216-20523267)
chr2 (216-276)||(27506975-27507035)
chr2 (212-257)||(5952949-5952993)
chr2 (219-276)||(26715940-26715997)
chr2 (220-276)||(9045842-9045898)
chr2 (216-276)||(24410242-24410302)
chr2 (210-276)||(10762799-10762865)
chr2 (164-206)||(27474302-27474344)
[»] chr4 (31 HSPs)
chr4 (209-287)||(37514557-37514635)
chr4 (209-276)||(10431442-10431509)
chr4 (210-284)||(5128975-5129049)
chr4 (210-275)||(55255080-55255145)
chr4 (224-287)||(1105445-1105508)
chr4 (210-276)||(47127981-47128047)
chr4 (213-276)||(17679220-17679283)
chr4 (210-276)||(45560704-45560770)
chr4 (213-276)||(48208453-48208516)
chr4 (212-276)||(13459786-13459850)
chr4 (210-264)||(32915297-32915351)
chr4 (226-275)||(38209842-38209891)
chr4 (219-276)||(27596639-27596696)
chr4 (229-276)||(9579469-9579516)
chr4 (229-276)||(9585164-9585211)
chr4 (152-210)||(1644067-1644125)
chr4 (226-276)||(34769533-34769583)
chr4 (210-257)||(10978144-10978191)
chr4 (219-269)||(54779450-54779500)
chr4 (213-254)||(23510922-23510963)
chr4 (219-276)||(24969251-24969308)
chr4 (223-276)||(35780556-35780609)
chr4 (216-276)||(54083478-54083538)
chr4 (222-276)||(16844839-16844893)
chr4 (220-262)||(32128402-32128444)
chr4 (222-276)||(37777459-37777513)
chr4 (151-210)||(9278161-9278218)
chr4 (246-276)||(23510887-23510917)
chr4 (226-276)||(40089340-40089390)
chr4 (221-262)||(2790988-2791029)
chr4 (240-276)||(51964204-51964240)
[»] chr6 (23 HSPs)
chr6 (210-287)||(24711131-24711208)
chr6 (208-287)||(30832656-30832734)
chr6 (209-275)||(21479283-21479349)
chr6 (210-275)||(13727650-13727715)
chr6 (212-276)||(23070889-23070953)
chr6 (208-267)||(27314773-27314832)
chr6 (210-276)||(12083640-12083706)
chr6 (210-276)||(19741223-19741289)
chr6 (213-271)||(21280336-21280394)
chr6 (210-275)||(33773900-33773964)
chr6 (208-267)||(27579084-27579143)
chr6 (210-276)||(1156017-1156083)
chr6 (47-92)||(17177782-17177827)
chr6 (151-206)||(22845356-22845411)
chr6 (219-276)||(17353768-17353825)
chr6 (219-276)||(19986975-19987032)
chr6 (157-210)||(26621369-26621422)
chr6 (157-210)||(26727348-26727401)
chr6 (219-276)||(27788922-27788979)
chr6 (216-262)||(235473-235519)
chr6 (219-276)||(20711952-20712009)
chr6 (165-210)||(8095377-8095422)
chr6 (219-275)||(11081684-11081740)
[»] scaffold0070 (1 HSPs)
scaffold0070 (209-276)||(1010-1077)
[»] scaffold0001 (2 HSPs)
scaffold0001 (208-255)||(181433-181480)
scaffold0001 (248-287)||(181851-181890)
[»] scaffold0102 (2 HSPs)
scaffold0102 (161-210)||(2306-2355)
scaffold0102 (161-210)||(6659-6708)
[»] scaffold0039 (1 HSPs)
scaffold0039 (219-276)||(106388-106445)
[»] scaffold0027 (1 HSPs)
scaffold0027 (210-258)||(4149-4197)


Alignment Details
Target: chr8 (Bit Score: 78; Significance: 2e-36; HSPs: 12)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 210 - 287
Target Start/End: Complemental strand, 20003942 - 20003865
Alignment:
Q  210 caggggcgtccctgagggggtgcaaacagctcaaacgagctgggcctccctcaaggatgggcctcaagagtgggggtt 287  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  20003942 caggggcgtccctgagggggtgcaaacagctcaaacgagctgggcctccctcaaggatgggcctcaagagtgggggtt 20003865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 210 - 275
Target Start/End: Complemental strand, 2952538 - 2952473
Alignment:
Q  210 caggggcgtccctgagggggtgcaaacagctcaaacgagctgggcctccctcaaggatgggcctca 275  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2952538 caggggcgtccctgagggggtgcaaacagctcaaacgagctgggcctccctcaaggatgggcctca 2952473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 210 - 275
Target Start/End: Complemental strand, 5861061 - 5860996
Alignment:
Q  210 caggggcgtccctgagggggtgcaaacagctcaaacgagctgggcctccctcaaggatgggcctca 275  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5861061 caggggcgtccctgagggggtgcaaacagctcaaacgagctgggcctccctcaaggatgggcctca 5860996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 209 - 287
Target Start/End: Complemental strand, 37430368 - 37430290
Alignment:
Q  209 gcaggggcgtccctgagggggtgcaaacagctcaaacgagctgggcctccctcaaggatgggcctcaagagtgggggtt 287  Q
    |||||||||||| ||||||||||||||||||||||||||| ||||||| ||| ||||||||||||||||||||||||||    
T  37430368 gcaggggcgtccttgagggggtgcaaacagctcaaacgagttgggccttccttaaggatgggcctcaagagtgggggtt 37430290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 210 - 275
Target Start/End: Original strand, 30883110 - 30883175
Alignment:
Q  210 caggggcgtccctgagggggtgcaaacagctcaaacgagctgggcctccctcaaggatgggcctca 275  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  30883110 caggggcgtccctgagtgggtgcaaacagctcaaacgagctgggcctccctcaaggatgggcctca 30883175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 209 - 275
Target Start/End: Complemental strand, 3048840 - 3048774
Alignment:
Q  209 gcaggggcgtccctgagggggtgcaaacagctcaaacgagctgggcctccctcaaggatgggcctca 275  Q
    ||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3048840 gcaggggcgtttctgagggggtgcaaacagctcaaacgagctgggcctccctcaaggatgggcctca 3048774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 212 - 276
Target Start/End: Original strand, 41878167 - 41878231
Alignment:
Q  212 ggggcgtccctgagggggtgcaaacagctcaaacgagctgggcctccctcaaggatgggcctcaa 276  Q
    ||||||||| ||||||||||||||||||||||||||| || |||||||||||||||| |||||||    
T  41878167 ggggcgtccttgagggggtgcaaacagctcaaacgagttgagcctccctcaaggatgagcctcaa 41878231  T

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Target: chr8; HSP #8
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 220 - 276
Target Start/End: Original strand, 45472201 - 45472257
Alignment:
Q  220 cctgagggggtgcaaacagctcaaacgagctgggcctccctcaaggatgggcctcaa 276  Q
    |||||||||||||||||||||||| ||||||||||| ||| ||||||||||||||||    
T  45472201 cctgagggggtgcaaacagctcaaccgagctgggccacccccaaggatgggcctcaa 45472257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 216 - 276
Target Start/End: Original strand, 42600590 - 42600650
Alignment:
Q  216 cgtccctgagggggtgcaaacagctcaaacgagctgggcctccctcaaggatgggcctcaa 276  Q
    ||||||||||||||||||||||||||||  |||||||||||||||||   |||||||||||    
T  42600590 cgtccctgagggggtgcaaacagctcaacagagctgggcctccctcagtcatgggcctcaa 42600650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 216 - 262
Target Start/End: Original strand, 10917200 - 10917246
Alignment:
Q  216 cgtccctgagggggtgcaaacagctcaaacgagctgggcctccctca 262  Q
    ||||| ||||||||||||||||||||||  |||||||||||||||||    
T  10917200 cgtccttgagggggtgcaaacagctcaacagagctgggcctccctca 10917246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 208 - 258
Target Start/End: Complemental strand, 45294647 - 45294597
Alignment:
Q  208 agcaggggcgtccctgagggggtgcaaacagctcaaacgagctgggcctcc 258  Q
    ||||||| ||||| |||||||||||||||||||| || |||||||||||||    
T  45294647 agcagggccgtccttgagggggtgcaaacagctctaatgagctgggcctcc 45294597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 219 - 276
Target Start/End: Complemental strand, 23606912 - 23606855
Alignment:
Q  219 ccctgagggggtgcaaacagctcaaacgagctgggcctccctcaaggatgggcctcaa 276  Q
    |||||||||||||||||||||||||  ||| |||||||||||||   |||||||||||    
T  23606912 ccctgagggggtgcaaacagctcaacagagttgggcctccctcagtcatgggcctcaa 23606855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 78; Significance: 2e-36; HSPs: 15)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 210 - 287
Target Start/End: Complemental strand, 15480295 - 15480218
Alignment:
Q  210 caggggcgtccctgagggggtgcaaacagctcaaacgagctgggcctccctcaaggatgggcctcaagagtgggggtt 287  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15480295 caggggcgtccctgagggggtgcaaacagctcaaacgagctgggcctccctcaaggatgggcctcaagagtgggggtt 15480218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 210 - 287
Target Start/End: Original strand, 19523093 - 19523170
Alignment:
Q  210 caggggcgtccctgagggggtgcaaacagctcaaacgagctgggcctccctcaaggatgggcctcaagagtgggggtt 287  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  19523093 caggggcgtccctgagggggtgcaaacagctcaaacgagctgggcctccctcaaggatgggcctcaagagtgggggtt 19523170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 213 - 287
Target Start/End: Complemental strand, 36188082 - 36188008
Alignment:
Q  213 gggcgtccctgagggggtgcaaacagctcaaacgagctgggcctccctcaaggatgggcctcaagagtgggggtt 287  Q
    |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  36188082 gggcgtccctgagggggtgcaaacagctcaaacgagttgggcctccctcaaggatgggcctcaagagtgggggtt 36188008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 209 - 276
Target Start/End: Complemental strand, 31881657 - 31881590
Alignment:
Q  209 gcaggggcgtccctgagggggtgcaaacagctcaaacgagctgggcctccctcaaggatgggcctcaa 276  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  31881657 gcaggggcgtccctgagggggtgcaaacagctcaaacgagctgggcctccctcaaggatggacctcaa 31881590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 214 - 275
Target Start/End: Complemental strand, 34756676 - 34756615
Alignment:
Q  214 ggcgtccctgagggggtgcaaacagctcaaacgagctgggcctccctcaaggatgggcctca 275  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34756676 ggcgttcctgagggggtgcaaacagctcaaacgagctgggcctccctcaaggatgggcctca 34756615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 210 - 276
Target Start/End: Complemental strand, 16592911 - 16592845
Alignment:
Q  210 caggggcgtccctgagggggtgcaaacagctcaaacgagctgggcctccctcaaggatgggcctcaa 276  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||| | |||||||||||||||    
T  16592911 caggggcgtccctgagggggtgcaaacagctcaaacgagctggacctcctttaaggatgggcctcaa 16592845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 210 - 276
Target Start/End: Original strand, 30853266 - 30853332
Alignment:
Q  210 caggggcgtccctgagggggtgcaaacagctcaaacgagctgggcctccctcaaggatgggcctcaa 276  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||| ||||||    
T  30853266 caggggcgtcccttagggggtgcaaacagctcaaacgagctgggcctccttcaaggatggacctcaa 30853332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 209 - 278
Target Start/End: Original strand, 2274797 - 2274866
Alignment:
Q  209 gcaggggcgtccctgagggggtgcaaacagctcaaacgagctgggcctccctcaaggatgggcctcaaga 278  Q
    |||||||||| ||||||||||||||||||||||||| ||| |||||||||||||||||||| ||||||||    
T  2274797 gcaggggcgttcctgagggggtgcaaacagctcaaatgagttgggcctccctcaaggatggacctcaaga 2274866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 210 - 273
Target Start/End: Complemental strand, 22987534 - 22987470
Alignment:
Q  210 caggggcgtccctgaggggg-tgcaaacagctcaaacgagctgggcctccctcaaggatgggcct 273  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||    
T  22987534 caggggcgtccctgaggggggtgcaaacagctcaaacgagctgggcctccctcaaagatgggcct 22987470  T

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Target: chr5; HSP #10
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 206 - 276
Target Start/End: Complemental strand, 31194837 - 31194767
Alignment:
Q  206 caagcaggggcgtccctgagggggtgcaaacagctcaaacgagctgggcctccctcaaggatgggcctcaa 276  Q
    ||||||||||||| || |||| |||||||||| ||||||||| ||||||||| ||||||||||||||||||    
T  31194837 caagcaggggcgttccagaggaggtgcaaacaactcaaacgaactgggcctctctcaaggatgggcctcaa 31194767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 210 - 276
Target Start/End: Complemental strand, 16199092 - 16199026
Alignment:
Q  210 caggggcgtccctgagggggtgcaaacagctcaaacgagctgggcctccctcaaggatgggcctcaa 276  Q
    |||| ||| |||||||||||||||||||||||||  |||||||||||||||||   |||||||||||    
T  16199092 caggcgcggccctgagggggtgcaaacagctcaacagagctgggcctccctcagtcatgggcctcaa 16199026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 216 - 276
Target Start/End: Original strand, 27923891 - 27923951
Alignment:
Q  216 cgtccctgagggggtgcaaacagctcaaacgagctgggcctccctcaaggatgggcctcaa 276  Q
    ||||||||||||||||||||||||||||  ||||||| |||||||||   |||||||||||    
T  27923891 cgtccctgagggggtgcaaacagctcaacagagctggacctccctcagtcatgggcctcaa 27923951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 210 - 258
Target Start/End: Complemental strand, 8433641 - 8433593
Alignment:
Q  210 caggggcgtccctgagggggtgcaaacagctcaaacgagctgggcctcc 258  Q
    ||||| ||||| |||||||||||||||||||| || |||||||||||||    
T  8433641 cagggccgtccttgagggggtgcaaacagctctaatgagctgggcctcc 8433593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 222 - 276
Target Start/End: Complemental strand, 16799610 - 16799556
Alignment:
Q  222 tgagggggtgcaaacagctcaaacgagctgggcctccctcaaggatgggcctcaa 276  Q
    ||||||||||||||||||||||  ||||| |||||||||||   |||||||||||    
T  16799610 tgagggggtgcaaacagctcaatagagctaggcctccctcagtcatgggcctcaa 16799556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 222 - 276
Target Start/End: Complemental strand, 38869647 - 38869593
Alignment:
Q  222 tgagggggtgcaaacagctcaaacgagctgggcctccctcaaggatgggcctcaa 276  Q
    ||||||||||||||||||||||   ||||||||||||||||   |||||||||||    
T  38869647 tgagggggtgcaaacagctcaacaaagctgggcctccctcagtcatgggcctcaa 38869593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 78; Significance: 2e-36; HSPs: 25)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 210 - 287
Target Start/End: Original strand, 14146205 - 14146282
Alignment:
Q  210 caggggcgtccctgagggggtgcaaacagctcaaacgagctgggcctccctcaaggatgggcctcaagagtgggggtt 287  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14146205 caggggcgtccctgagggggtgcaaacagctcaaacgagctgggcctccctcaaggatgggcctcaagagtgggggtt 14146282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 210 - 287
Target Start/End: Complemental strand, 41697345 - 41697268
Alignment:
Q  210 caggggcgtccctgagggggtgcaaacagctcaaacgagctgggcctccctcaaggatgggcctcaagagtgggggtt 287  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  41697345 caggggcgtccctgagggggtgcaaacagctcaaacgagctgggcctccctcaaggatgggcatcaagagtgggggtt 41697268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 210 - 287
Target Start/End: Original strand, 3406323 - 3406400
Alignment:
Q  210 caggggcgtccctgagggggtgcaaacagctcaaacgagctgggcctccctcaaggatgggcctcaagagtgggggtt 287  Q
    ||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  3406323 caggggcgtccttgagggggtgcaaacagctcaaacgagctgggcctcccccaaggatgggcctcaagagtgggggtt 3406400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 210 - 287
Target Start/End: Complemental strand, 3440497 - 3440420
Alignment:
Q  210 caggggcgtccctgagggggtgcaaacagctcaaacgagctgggcctccctcaaggatgggcctcaagagtgggggtt 287  Q
    ||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  3440497 caggggcgtccttgagggggtgcaaacagctcaaacgagctgggcctcccccaaggatgggcctcaagagtgggggtt 3440420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 214 - 287
Target Start/End: Original strand, 6888473 - 6888546
Alignment:
Q  214 ggcgtccctgagggggtgcaaacagctcaaacgagctgggcctccctcaaggatgggcctcaagagtgggggtt 287  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  6888473 ggcgtccctgagggggtgcaaacagctcaaacgagttgggcctccctcaaggatgggcctcaagagtgggggtt 6888546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 218 - 287
Target Start/End: Original strand, 6771704 - 6771773
Alignment:
Q  218 tccctgagggggtgcaaacagctcaaacgagctgggcctccctcaaggatgggcctcaagagtgggggtt 287  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  6771704 tccctgagggggtgcaaacagctcaaacgagctgggcctcccttaaggatgggcctcaagagtgggggtt 6771773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 210 - 275
Target Start/End: Original strand, 44655539 - 44655604
Alignment:
Q  210 caggggcgtccctgagggggtgcaaacagctcaaacgagctgggcctccctcaaggatgggcctca 275  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44655539 caggggcgtccctgagggggtgcaaacagctcaaacgagctgggcctccctcaaggatgggcctca 44655604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 205 - 287
Target Start/End: Original strand, 16139955 - 16140037
Alignment:
Q  205 ccaagcaggggcgtccctgagggggtgcaaacagctcaaacgagctgggcctccctcaaggatgggcctcaagagtgggggtt 287  Q
    |||| ||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||| |||||| |||||||||    
T  16139955 ccaaacaggggcgtccttgagggggtgcaaacagctcaaacgagttgggcctccctcaaggatgggtctcaagcgtgggggtt 16140037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 210 - 275
Target Start/End: Complemental strand, 27907014 - 27906949
Alignment:
Q  210 caggggcgtccctgagggggtgcaaacagctcaaacgagctgggcctccctcaaggatgggcctca 275  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27907014 caggggcgtccttgagggggtgcaaacagctcaaacgagctgggcctccctcaaggatgggcctca 27906949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 209 - 276
Target Start/End: Complemental strand, 10912161 - 10912094
Alignment:
Q  209 gcaggggcgtccctgagggggtgcaaacagctcaaacgagctgggcctccctcaaggatgggcctcaa 276  Q
    |||||| || |||||||||||||| |||||||||||||||||||||||||  ||||||||||||||||    
T  10912161 gcagggccggccctgagggggtgcgaacagctcaaacgagctgggcctcctccaaggatgggcctcaa 10912094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 210 - 256
Target Start/End: Original strand, 50880568 - 50880614
Alignment:
Q  210 caggggcgtccctgagggggtgcaaacagctcaaacgagctgggcct 256  Q
    |||||||||||||||||||||||||||||||||||||||||||||||    
T  50880568 caggggcgtccctgagggggtgcaaacagctcaaacgagctgggcct 50880614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 209 - 276
Target Start/End: Original strand, 23181710 - 23181777
Alignment:
Q  209 gcaggggcgtccctgagggggtgcaaacagctcaaacgagctgggcctccctcaaggatgggcctcaa 276  Q
    |||||| || ||||||||||||||||||||||||| ||||||||||| ||| ||| ||||||||||||    
T  23181710 gcagggccggccctgagggggtgcaaacagctcaaccgagctgggccacccccaatgatgggcctcaa 23181777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 216 - 276
Target Start/End: Complemental strand, 13913776 - 13913716
Alignment:
Q  216 cgtccctgagggggtgcaaacagctcaaacgagctgggcctccctcaaggatgggcctcaa 276  Q
    ||||||||||||||||||||||||||||  |||||||||||||||||   |||||||||||    
T  13913776 cgtccctgagggggtgcaaacagctcaacagagctgggcctccctcagtcatgggcctcaa 13913716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 216 - 276
Target Start/End: Complemental strand, 40502084 - 40502024
Alignment:
Q  216 cgtccctgagggggtgcaaacagctcaaacgagctgggcctccctcaaggatgggcctcaa 276  Q
    ||||||||||||||||||||||||||||  |||||||||||||||||   |||||||||||    
T  40502084 cgtccctgagggggtgcaaacagctcaacagagctgggcctccctcagtcatgggcctcaa 40502024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 222 - 268
Target Start/End: Complemental strand, 5028028 - 5027982
Alignment:
Q  222 tgagggggtgcaaacagctcaaacgagctgggcctccctcaaggatg 268  Q
    |||||||||||||||||||||| ||||||||||||||| ||||||||    
T  5028028 tgagggggtgcaaacagctcaaccgagctgggcctcccccaaggatg 5027982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 219 - 276
Target Start/End: Complemental strand, 1367168 - 1367111
Alignment:
Q  219 ccctgagggggtgcaaacagctcaaacgagctgggcctccctcaaggatgggcctcaa 276  Q
    |||||||||||||||||||||||||  |||||||||||||||||   |||||||||||    
T  1367168 ccctgagggggtgcaaacagctcaacagagctgggcctccctcagtcatgggcctcaa 1367111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 161 - 210
Target Start/End: Original strand, 23415318 - 23415367
Alignment:
Q  161 ctaataccccctctcaaactggaggttggtagatatctaccatcccaagc 210  Q
    ||||||||||| | ||| ||||||||||||||||||||||||||||||||    
T  23415318 ctaatacccccccacaagctggaggttggtagatatctaccatcccaagc 23415367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 219 - 262
Target Start/End: Original strand, 44895476 - 44895519
Alignment:
Q  219 ccctgagggggtgcaaacagctcaaacgagctgggcctccctca 262  Q
    |||||||||||||||||||||||||  |||||||||||||||||    
T  44895476 ccctgagggggtgcaaacagctcaacagagctgggcctccctca 44895519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 219 - 276
Target Start/End: Complemental strand, 9173312 - 9173255
Alignment:
Q  219 ccctgagggggtgcaaacagctcaaacgagctgggcctccctcaaggatgggcctcaa 276  Q
    |||||||||||||||||||||||||  ||| |||||||||||||   |||||||||||    
T  9173312 ccctgagggggtgcaaacagctcaacagagttgggcctccctcagtcatgggcctcaa 9173255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 161 - 206
Target Start/End: Original strand, 23700666 - 23700711
Alignment:
Q  161 ctaataccccctctcaaactggaggttggtagatatctaccatccc 206  Q
    ||||||| ||||| |||||||||||||||||||||||| |||||||    
T  23700666 ctaatacgccctcgcaaactggaggttggtagatatctgccatccc 23700711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 207 - 257
Target Start/End: Original strand, 5315791 - 5315841
Alignment:
Q  207 aagcaggggcgtccctgagggggtgcaaacagctcaaacgagctgggcctc 257  Q
    ||||||||||||| |||||||| || ||||| |||||||||| ||||||||    
T  5315791 aagcaggggcgtctctgaggggatgtaaacacctcaaacgagttgggcctc 5315841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 222 - 276
Target Start/End: Original strand, 27559459 - 27559513
Alignment:
Q  222 tgagggggtgcaaacagctcaaacgagctgggcctccctcaaggatgggcctcaa 276  Q
    ||||||||||||||||||||||  ||||||| |||||||||   |||||||||||    
T  27559459 tgagggggtgcaaacagctcaacagagctggacctccctcagtcatgggcctcaa 27559513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 219 - 276
Target Start/End: Original strand, 17168778 - 17168835
Alignment:
Q  219 ccctgagggggtgcaaacagctcaaacgagctgggcctccctcaaggatgggcctcaa 276  Q
    |||||||||| ||||||||||||||  ||||| |||||||||||   |||||||||||    
T  17168778 ccctgaggggatgcaaacagctcaatagagcttggcctccctcagtcatgggcctcaa 17168835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 210 - 253
Target Start/End: Original strand, 34246890 - 34246930
Alignment:
Q  210 caggggcgtccctgagggggtgcaaacagctcaaacgagctggg 253  Q
    |||||||||||||||||   ||||||||||||||||||||||||    
T  34246890 caggggcgtccctgagg---tgcaaacagctcaaacgagctggg 34246930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 222 - 275
Target Start/End: Complemental strand, 51607727 - 51607674
Alignment:
Q  222 tgagggggtgcaaacagctcaaacgagctgggcctccctcaaggatgggcctca 275  Q
    ||||| ||||||||||||||||  ||||||||||| ||||||  ||||||||||    
T  51607727 tgaggtggtgcaaacagctcaatagagctgggccttcctcaatcatgggcctca 51607674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 74; Significance: 6e-34; HSPs: 14)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 210 - 287
Target Start/End: Complemental strand, 12596495 - 12596418
Alignment:
Q  210 caggggcgtccctgagggggtgcaaacagctcaaacgagctgggcctccctcaaggatgggcctcaagagtgggggtt 287  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  12596495 caggggcgtccctgagggggtgcaaacagctcaaacgagctgggcctccctcaaggatggccctcaagagtgggggtt 12596418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 208 - 287
Target Start/End: Original strand, 10955376 - 10955455
Alignment:
Q  208 agcaggggcgtccctgagggggtgcaaacagctcaaacgagctgggcctccctcaaggatgggcctcaagagtgggggtt 287  Q
    ||||||||||||| |||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  10955376 agcaggggcgtccttgagggggtgcaaatagctcaaacgagttgggcctccctcaaggatgggcctcaagagtgggggtt 10955455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 210 - 275
Target Start/End: Complemental strand, 18777084 - 18777019
Alignment:
Q  210 caggggcgtccctgagggggtgcaaacagctcaaacgagctgggcctccctcaaggatgggcctca 275  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  18777084 caggggcgtccctgaggaggtgcaaacagctcaaacgagctgggcctccctcaaggatgggcctca 18777019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 211 - 276
Target Start/End: Original strand, 28749582 - 28749647
Alignment:
Q  211 aggggcgtccctgagggggtgcaaacagctcaaacgagctgggcctccctcaaggatgggcctcaa 276  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28749582 aggggcgtctctgagggggtgcaaacagctcaaacgagctgggcctccctcaaggatgggcctcaa 28749647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 205 - 276
Target Start/End: Original strand, 29076925 - 29076998
Alignment:
Q  205 ccaagcaggggcgtccctgagggggtgcaaacagctcaaacgagctgggcct--ccctcaaggatgggcctcaa 276  Q
    |||| ||| ||||| ||||||||||||||||||||| |||||||| ||||||  ||||||||||||||||||||    
T  29076925 ccaaacagaggcgttcctgagggggtgcaaacagcttaaacgagcagggcctccccctcaaggatgggcctcaa 29076998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 219 - 276
Target Start/End: Complemental strand, 47985259 - 47985202
Alignment:
Q  219 ccctgagggggtgcaaacagctcaaacgagctgggcctccctcaaggatgggcctcaa 276  Q
    |||||||||||||||||||||||||  |||||||||||||||||   |||||||||||    
T  47985259 ccctgagggggtgcaaacagctcaacagagctgggcctccctcagtcatgggcctcaa 47985202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 151 - 206
Target Start/End: Complemental strand, 14236917 - 14236862
Alignment:
Q  151 tcttcatatgctaataccccctctcaaactggaggttggtagatatctaccatccc 206  Q
    |||||||||| | |||||||||| ||||| || |||||||||||||||||||||||    
T  14236917 tcttcatatgttgataccccctcgcaaaccggtggttggtagatatctaccatccc 14236862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 219 - 262
Target Start/End: Original strand, 19691906 - 19691949
Alignment:
Q  219 ccctgagggggtgcaaacagctcaaacgagctgggcctccctca 262  Q
    |||||||||||||||||||||||||  |||||||||||||||||    
T  19691906 ccctgagggggtgcaaacagctcaacagagctgggcctccctca 19691949  T

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Target: chr7; HSP #9
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 221 - 276
Target Start/End: Complemental strand, 48984132 - 48984077
Alignment:
Q  221 ctgagggggtgcaaacagctcaaacgagctgggcctccctcaaggatgggcctcaa 276  Q
    |||||||||||||||||||||||  |||||||||||||||||   |||||||||||    
T  48984132 ctgagggggtgcaaacagctcaacagagctgggcctccctcagtcatgggcctcaa 48984077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 219 - 276
Target Start/End: Complemental strand, 24525975 - 24525918
Alignment:
Q  219 ccctgagggggtgcaaacagctcaaacgagctgggcctccctcaaggatgggcctcaa 276  Q
    |||||||||||||||||||||||||  ||||||||||||||| |   |||||||||||    
T  24525975 ccctgagggggtgcaaacagctcaacagagctgggcctcccttagtcatgggcctcaa 24525918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 216 - 276
Target Start/End: Complemental strand, 20091573 - 20091514
Alignment:
Q  216 cgtccctgagggggtgcaaacagctcaaacgagctgggcctccctcaaggatgggcctcaa 276  Q
    |||||||| |||||||||||||||||||  |||||||||||||||||   |||||||||||    
T  20091573 cgtccctg-gggggtgcaaacagctcaatagagctgggcctccctcagtcatgggcctcaa 20091514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 222 - 276
Target Start/End: Complemental strand, 23551359 - 23551305
Alignment:
Q  222 tgagggggtgcaaacagctcaaacgagctgggcctccctcaaggatgggcctcaa 276  Q
    ||||||||||||||||||||||  ||| ||| ||||||||||  |||||||||||    
T  23551359 tgagggggtgcaaacagctcaatagagttggacctccctcaatcatgggcctcaa 23551305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 219 - 276
Target Start/End: Original strand, 25010262 - 25010319
Alignment:
Q  219 ccctgagggggtgcaaacagctcaaacgagctgggcctccctcaaggatgggcctcaa 276  Q
    |||||||||||| ||||||||||||  ||| |||||||||||||   |||||||||||    
T  25010262 ccctgagggggtacaaacagctcaacagagttgggcctccctcagtcatgggcctcaa 25010319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 210 - 253
Target Start/End: Complemental strand, 40357629 - 40357589
Alignment:
Q  210 caggggcgtccctgagggggtgcaaacagctcaaacgagctggg 253  Q
    |||||||||||||||||   ||||||||||||||||||||||||    
T  40357629 caggggcgtccctgagg---tgcaaacagctcaaacgagctggg 40357589  T

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Target: chr3 (Bit Score: 74; Significance: 6e-34; HSPs: 28)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 210 - 287
Target Start/End: Complemental strand, 50258800 - 50258723
Alignment:
Q  210 caggggcgtccctgagggggtgcaaacagctcaaacgagctgggcctccctcaaggatgggcctcaagagtgggggtt 287  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  50258800 caggggcgtccctgagggggtgcaaacagctcaaatgagctgggcctccctcaaggatgggcctcaagagtgggggtt 50258723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 72; E-Value: 9e-33
Query Start/End: Original strand, 208 - 287
Target Start/End: Original strand, 42098696 - 42098775
Alignment:
Q  208 agcaggggcgtccctgagggggtgcaaacagctcaaacgagctgggcctccctcaaggatgggcctcaagagtgggggtt 287  Q
    ||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||    
T  42098696 agcaggggcgtccctgagggggtgcaaacagctcaaacgagttgggcctcccacaaggatgggcctcaagagtgggggtt 42098775  T

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Target: chr3; HSP #3
Raw Score: 67; E-Value: 9e-30
Query Start/End: Original strand, 209 - 287
Target Start/End: Original strand, 47467581 - 47467658
Alignment:
Q  209 gcaggggcgtccctgagggggtgcaaacagctcaaacgagctgggcctccctcaaggatgggcctcaagagtgggggtt 287  Q
    |||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  47467581 gcaggggcgtccctgagggg-tgcaaacagctcaaacgagctgagcctccctcaaggatgggcctcaagagtgggggtt 47467658  T

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Target: chr3; HSP #4
Raw Score: 67; E-Value: 9e-30
Query Start/End: Original strand, 209 - 287
Target Start/End: Complemental strand, 53149524 - 53149446
Alignment:
Q  209 gcaggggcgtccctgagggggtgcaaacagctcaaacgagctgggcctccctcaaggatgggcctcaagagtgggggtt 287  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||    
T  53149524 gcaggggcgtccctcagggggtgcaaacagctcaaacgagctgggcctccaccaaggatgggcctcaagagtgggggtt 53149446  T

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Target: chr3; HSP #5
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 210 - 287
Target Start/End: Original strand, 21582668 - 21582745
Alignment:
Q  210 caggggcgtccctgagggggtgcaaacagctcaaacgagctgggcctccctcaaggatgggcctcaagagtgggggtt 287  Q
    |||||||||| |||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||    
T  21582668 caggggcgtctctgagggggtgcaaacagctcaaacgagctgggcatcccttaaggatgggcctcaagagtgggggtt 21582745  T

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Target: chr3; HSP #6
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 210 - 275
Target Start/End: Complemental strand, 36716341 - 36716276
Alignment:
Q  210 caggggcgtccctgagggggtgcaaacagctcaaacgagctgggcctccctcaaggatgggcctca 275  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36716341 caggggcgtccctgagggggtgcaaacagctcaaacgagctgggcctccctcaaggatgggcctca 36716276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 210 - 275
Target Start/End: Complemental strand, 38681413 - 38681348
Alignment:
Q  210 caggggcgtccctgagggggtgcaaacagctcaaacgagctgggcctccctcaaggatgggcctca 275  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38681413 caggggcgtccctgagggggtgcaaacagctcaaacgagctgggcctccctcaaggatgggcctca 38681348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 211 - 276
Target Start/End: Complemental strand, 3954917 - 3954852
Alignment:
Q  211 aggggcgtccctgagggggtgcaaacagctcaaacgagctgggcctccctcaaggatgggcctcaa 276  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  3954917 aggggcgtccctgagggggtgcaaacagctcaaacgagctgggcctccctcaaggatggacctcaa 3954852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 210 - 275
Target Start/End: Complemental strand, 27078884 - 27078819
Alignment:
Q  210 caggggcgtccctgagggggtgcaaacagctcaaacgagctgggcctccctcaaggatgggcctca 275  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27078884 caggggcgttcctgagggggtgcaaacagctcaaacgagctgggcctccctcaaggatgggcctca 27078819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 210 - 275
Target Start/End: Complemental strand, 27084681 - 27084616
Alignment:
Q  210 caggggcgtccctgagggggtgcaaacagctcaaacgagctgggcctccctcaaggatgggcctca 275  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27084681 caggggcgttcctgagggggtgcaaacagctcaaacgagctgggcctccctcaaggatgggcctca 27084616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 210 - 276
Target Start/End: Original strand, 13795187 - 13795253
Alignment:
Q  210 caggggcgtccctgagggggtgcaaacagctcaaacgagctgggcctccctcaaggatgggcctcaa 276  Q
    ||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  13795187 caggggcgtccttgagggcgtgcaaacagctcaaacgagctgggcctccctcaaggatgggcctcaa 13795253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 209 - 275
Target Start/End: Complemental strand, 54619520 - 54619454
Alignment:
Q  209 gcaggggcgtccctgagggggtgcaaacagctcaaacgagctgggcctccctcaaggatgggcctca 275  Q
    |||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  54619520 gcaggggtatccctgagggggtgcaaacagctcaaacgagctgggcctccctcaaggatgggcctca 54619454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 208 - 257
Target Start/End: Complemental strand, 29620667 - 29620618
Alignment:
Q  208 agcaggggcgtccctgagggggtgcaaacagctcaaacgagctgggcctc 257  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29620667 agcaggggcgtccctgagggggtgcaaacagctcaaacgagctgggcctc 29620618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 226 - 275
Target Start/End: Original strand, 36605862 - 36605911
Alignment:
Q  226 ggggtgcaaacagctcaaacgagctgggcctccctcaaggatgggcctca 275  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36605862 ggggtgcaaacagctcaaacgagctgggcctccctcaaggatgggcctca 36605911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 219 - 276
Target Start/End: Complemental strand, 1148411 - 1148354
Alignment:
Q  219 ccctgagggggtgcaaacagctcaaacgagctgggcctccctcaaggatgggcctcaa 276  Q
    |||||||||||||| |||||||||||||||||||||||||| ||||||||||| ||||    
T  1148411 ccctgagggggtgcgaacagctcaaacgagctgggcctcccccaaggatgggcttcaa 1148354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 210 - 273
Target Start/End: Original strand, 18372033 - 18372095
Alignment:
Q  210 caggggcgtccctgagggggtgcaaacagctcaaacgagctgggcctccctcaaggatgggcct 273  Q
    |||||||||| |||||||| ||||||||| |||||||||||||| |||||||||||||||||||    
T  18372033 caggggcgtctctgagggg-tgcaaacagttcaaacgagctggggctccctcaaggatgggcct 18372095  T

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Target: chr3; HSP #17
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 219 - 273
Target Start/End: Original strand, 48156951 - 48157005
Alignment:
Q  219 ccctgagggggtgcaaacagctcaaacgagctgggcctccctcaaggatgggcct 273  Q
    |||||||||||||||||||||||||  ||||||||||||||||||  ||||||||    
T  48156951 ccctgagggggtgcaaacagctcaacagagctgggcctccctcaatcatgggcct 48157005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 219 - 276
Target Start/End: Complemental strand, 9878976 - 9878919
Alignment:
Q  219 ccctgagggggtgcaaacagctcaaacgagctgggcctccctcaaggatgggcctcaa 276  Q
    |||||||||||||||||||||||||  ||||||||||||||| ||  |||||||||||    
T  9878976 ccctgagggggtgcaaacagctcaacagagctgggcctcccttaatcatgggcctcaa 9878919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 219 - 276
Target Start/End: Complemental strand, 34290931 - 34290874
Alignment:
Q  219 ccctgagggggtgcaaacagctcaaacgagctgggcctccctcaaggatgggcctcaa 276  Q
    |||||||||||||||||||||||||  ||| ||||||||||||| | |||||||||||    
T  34290931 ccctgagggggtgcaaacagctcaacagagttgggcctccctcaggcatgggcctcaa 34290874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 219 - 276
Target Start/End: Complemental strand, 53507174 - 53507117
Alignment:
Q  219 ccctgagggggtgcaaacagctcaaacgagctgggcctccctcaaggatgggcctcaa 276  Q
    |||||||||||||||||||||||||  |||||||||||||||||   |||||||||||    
T  53507174 ccctgagggggtgcaaacagctcaacagagctgggcctccctcagtcatgggcctcaa 53507117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 220 - 276
Target Start/End: Complemental strand, 43207530 - 43207474
Alignment:
Q  220 cctgagggggtgcaaacagctcaaacgagctgggcctccctcaaggatgggcctcaa 276  Q
    ||||||||||||||||||||||||  |||||||||||||||||   |||||||||||    
T  43207530 cctgagggggtgcaaacagctcaacagagctgggcctccctcagtcatgggcctcaa 43207474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 216 - 276
Target Start/End: Complemental strand, 50939528 - 50939468
Alignment:
Q  216 cgtccctgagggggtgcaaacagctcaaacgagctgggcctccctcaaggatgggcctcaa 276  Q
    ||||||||||| ||||||||||||||||  |||||||||||||||||   |||||||||||    
T  50939528 cgtccctgaggaggtgcaaacagctcaacagagctgggcctccctcagtcatgggcctcaa 50939468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 221 - 276
Target Start/End: Original strand, 44708293 - 44708348
Alignment:
Q  221 ctgagggggtgcaaacagctcaaacgagctgggcctccctcaaggatgggcctcaa 276  Q
    |||||||||||||||||||||||  |||||||||||||||||   |||||||||||    
T  44708293 ctgagggggtgcaaacagctcaacagagctgggcctccctcagtcatgggcctcaa 44708348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 164 - 206
Target Start/End: Original strand, 5746975 - 5747017
Alignment:
Q  164 ataccccctctcaaactggaggttggtagatatctaccatccc 206  Q
    |||||||||| |||||||| |||||||||||||||||||||||    
T  5746975 ataccccctcgcaaactggtggttggtagatatctaccatccc 5747017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 164 - 206
Target Start/End: Original strand, 5783934 - 5783976
Alignment:
Q  164 ataccccctctcaaactggaggttggtagatatctaccatccc 206  Q
    |||||||||| |||||||| |||||||||||||||||||||||    
T  5783934 ataccccctcgcaaactggtggttggtagatatctaccatccc 5783976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 220 - 276
Target Start/End: Complemental strand, 8074143 - 8074087
Alignment:
Q  220 cctgagggggtgcaaacagctcaaacgagctgggcctccctcaaggatgggcctcaa 276  Q
    ||||||||  |||||||| ||||| ||||||||||||||  ||||||||||||||||    
T  8074143 cctgagggattgcaaacaactcaatcgagctgggcctcctccaaggatgggcctcaa 8074087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 206 - 259
Target Start/End: Original strand, 33426346 - 33426399
Alignment:
Q  206 caagcaggggcgtccctgagggggtgcaaacagctcaaacgagctgggcctccc 259  Q
    ||||||||| ||||| || || ||||||||||||||||  ||||||||||||||    
T  33426346 caagcagggccgtccatggggaggtgcaaacagctcaatggagctgggcctccc 33426399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 220 - 276
Target Start/End: Complemental strand, 54407447 - 54407391
Alignment:
Q  220 cctgagggggtgcaaacagctcaaacgagctgggcctccctcaaggatgggcctcaa 276  Q
    ||||||| ||||||||||||||||  ||| |||||||||||||   |||||||||||    
T  54407447 cctgaggaggtgcaaacagctcaacagagttgggcctccctcagtcatgggcctcaa 54407391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 74; Significance: 6e-34; HSPs: 21)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 210 - 287
Target Start/End: Original strand, 7162677 - 7162754
Alignment:
Q  210 caggggcgtccctgagggggtgcaaacagctcaaacgagctgggcctccctcaaggatgggcctcaagagtgggggtt 287  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  7162677 caggggcgtccctgagggggtgcaaacagctcaaacgagctgggcctcccacaaggatgggcctcaagagtgggggtt 7162754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 210 - 287
Target Start/End: Original strand, 3952899 - 3952976
Alignment:
Q  210 caggggcgtccctgagggggtgcaaacagctcaaacgagctgggcctccctcaaggatgggcctcaagagtgggggtt 287  Q
    |||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3952899 caggggtgtctctgagggggtgcaaacagctcaaacgagctgggcctccctcaaggatgggcctcaagagtgggggtt 3952976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 210 - 275
Target Start/End: Original strand, 3155003 - 3155068
Alignment:
Q  210 caggggcgtccctgagggggtgcaaacagctcaaacgagctgggcctccctcaaggatgggcctca 275  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3155003 caggggcgtccctgagggggtgcaaacagctcaaacgagctgggcctccctcaaggatgggcctca 3155068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 212 - 275
Target Start/End: Original strand, 6964794 - 6964857
Alignment:
Q  212 ggggcgtccctgagggggtgcaaacagctcaaacgagctgggcctccctcaaggatgggcctca 275  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6964794 ggggcgtccctgagggggtgcaaacagctcaaacgagctgggcctccctcaaggatgggcctca 6964857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 209 - 276
Target Start/End: Complemental strand, 12337756 - 12337689
Alignment:
Q  209 gcaggggcgtccctgagggggtgcaaacagctcaaacgagctgggcctccctcaaggatgggcctcaa 276  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  12337756 gcaggggcgtccctgagggggtgcaaacagctcaaacgagctgagcctccctcaaggatgggcctcaa 12337689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 210 - 275
Target Start/End: Original strand, 4505679 - 4505744
Alignment:
Q  210 caggggcgtccctgagggggtgcaaacagctcaaacgagctgggcctccctcaaggatgggcctca 275  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  4505679 caggggcgtccctgagggggtgcaaacagctcaaacgagctgggcctccctcaatgatgggcctca 4505744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 210 - 275
Target Start/End: Original strand, 34693147 - 34693212
Alignment:
Q  210 caggggcgtccctgagggggtgcaaacagctcaaacgagctgggcctccctcaaggatgggcctca 275  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  34693147 caggggcgtccctgagggggtgcaaacagctcaaacgagttgggcctccctcaaggatgggcctca 34693212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 210 - 275
Target Start/End: Original strand, 34715559 - 34715624
Alignment:
Q  210 caggggcgtccctgagggggtgcaaacagctcaaacgagctgggcctccctcaaggatgggcctca 275  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  34715559 caggggcgtccctgagggggtgcaaacagctcaaacgagttgggcctccctcaaggatgggcctca 34715624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 211 - 276
Target Start/End: Original strand, 40635963 - 40636028
Alignment:
Q  211 aggggcgtccctgagggggtgcaaacagctcaaacgagctgggcctccctcaaggatgggcctcaa 276  Q
    |||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||| ||||    
T  40635963 aggggcgtccctaagggggtgcaaacagctcaaacgagttgggcctccctcaaggatgggcttcaa 40636028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 210 - 273
Target Start/End: Original strand, 3399509 - 3399572
Alignment:
Q  210 caggggcgtccctgagggggtgcaaacagctcaaacgagctgggcctccctcaaggatgggcct 273  Q
    ||||||||||| ||||||||||||||||||||||||||| ||| ||||||||||||||||||||    
T  3399509 caggggcgtccttgagggggtgcaaacagctcaaacgagttggacctccctcaaggatgggcct 3399572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 151 - 209
Target Start/End: Complemental strand, 37178830 - 37178772
Alignment:
Q  151 tcttcatatgctaataccccctctcaaactggaggttggtagatatctaccatcccaag 209  Q
    |||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  37178830 tctttatatgctaataccccctctcaaactggtggttggtagatatctaccatcccaag 37178772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 210 - 276
Target Start/End: Complemental strand, 41213994 - 41213928
Alignment:
Q  210 caggggcgtccctgagggggtgcaaacagctcaaacgagctgggcctccctcaaggatgggcctcaa 276  Q
    ||||||| ||| ||||||||||||||||||| |||||||||||| ||||||| ||||||||||||||    
T  41213994 caggggcatccttgagggggtgcaaacagcttaaacgagctgggtctccctcgaggatgggcctcaa 41213928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 214 - 275
Target Start/End: Complemental strand, 8907391 - 8907330
Alignment:
Q  214 ggcgtccctgagggggtgcaaacagctcaaacgagctgggcctccctcaaggatgggcctca 275  Q
    |||||||||||||||||||||||||||||||| |||||| |||||||||| |||||| ||||    
T  8907391 ggcgtccctgagggggtgcaaacagctcaaacaagctggacctccctcaaagatgggtctca 8907330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 159 - 210
Target Start/End: Complemental strand, 20523267 - 20523216
Alignment:
Q  159 tgctaataccccctctcaaactggaggttggtagatatctaccatcccaagc 210  Q
    ||||||||||||||| ||| ||||||||||||||||||||||||||||||||    
T  20523267 tgctaataccccctcgcaagctggaggttggtagatatctaccatcccaagc 20523216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 216 - 276
Target Start/End: Complemental strand, 27507035 - 27506975
Alignment:
Q  216 cgtccctgagggggtgcaaacagctcaaacgagctgggcctccctcaaggatgggcctcaa 276  Q
    ||||||||||||||||||||||||||||  |||||||||||||||||   |||||||||||    
T  27507035 cgtccctgagggggtgcaaacagctcaacagagctgggcctccctcagtcatgggcctcaa 27506975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 212 - 257
Target Start/End: Complemental strand, 5952993 - 5952949
Alignment:
Q  212 ggggcgtccctgagggggtgcaaacagctcaaacgagctgggcctc 257  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||    
T  5952993 ggggcgtccctgagggg-tgcaaacagctcaaacgagctgggcctc 5952949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 219 - 276
Target Start/End: Original strand, 26715940 - 26715997
Alignment:
Q  219 ccctgagggggtgcaaacagctcaaacgagctgggcctccctcaaggatgggcctcaa 276  Q
    |||||||||||||||||||||||||  |||||||||||||||||   |||||||||||    
T  26715940 ccctgagggggtgcaaacagctcaacagagctgggcctccctcagtcatgggcctcaa 26715997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 220 - 276
Target Start/End: Original strand, 9045842 - 9045898
Alignment:
Q  220 cctgagggggtgcaaacagctcaaacgagctgggcctccctcaaggatgggcctcaa 276  Q
    ||||||||||||||||||||||||  |||||||||||||||||   |||||||||||    
T  9045842 cctgagggggtgcaaacagctcaacagagctgggcctccctcagtcatgggcctcaa 9045898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 216 - 276
Target Start/End: Original strand, 24410242 - 24410302
Alignment:
Q  216 cgtccctgagggggtgcaaacagctcaaacgagctgggcctccctcaaggatgggcctcaa 276  Q
    ||||||| ||||||||||||||||||||  |||||||||||||||||   |||||||||||    
T  24410242 cgtccctaagggggtgcaaacagctcaacagagctgggcctccctcagtcatgggcctcaa 24410302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 210 - 276
Target Start/End: Complemental strand, 10762865 - 10762799
Alignment:
Q  210 caggggcgtccctgagggggtgcaaacagctcaaacgagctgggcctccctcaaggatgggcctcaa 276  Q
    ||||| || |||||||||| ||||||||||||||  ||||||||| ||||||||  |||||||||||    
T  10762865 cagggccggccctgaggggatgcaaacagctcaacagagctgggcttccctcaatcatgggcctcaa 10762799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 164 - 206
Target Start/End: Complemental strand, 27474344 - 27474302
Alignment:
Q  164 ataccccctctcaaactggaggttggtagatatctaccatccc 206  Q
    |||||||||| |||||||| |||||||||||||||||||||||    
T  27474344 ataccccctcgcaaactggtggttggtagatatctaccatccc 27474302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 71; Significance: 4e-32; HSPs: 31)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 209 - 287
Target Start/End: Original strand, 37514557 - 37514635
Alignment:
Q  209 gcaggggcgtccctgagggggtgcaaacagctcaaacgagctgggcctccctcaaggatgggcctcaagagtgggggtt 287  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||    
T  37514557 gcaggggcgtccctgagggggtgcaaacagctcaaacgagctgggcctcctccaaggatgggcctcaagagtgggggtt 37514635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 209 - 276
Target Start/End: Complemental strand, 10431509 - 10431442
Alignment:
Q  209 gcaggggcgtccctgagggggtgcaaacagctcaaacgagctgggcctccctcaaggatgggcctcaa 276  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10431509 gcaggggcgtccctgagggggtgcaaacagctcaaacgagctgggcctccctcaaggatgggcctcaa 10431442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 67; E-Value: 9e-30
Query Start/End: Original strand, 210 - 284
Target Start/End: Complemental strand, 5129049 - 5128975
Alignment:
Q  210 caggggcgtccctgagggggtgcaaacagctcaaacgagctgggcctccctcaaggatgggcctcaagagtgggg 284  Q
    ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  5129049 caggggcgttcctgagggggtgcaaacagctcaaacgagctgggcctccctcaaggataggcctcaagagtgggg 5128975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 210 - 275
Target Start/End: Original strand, 55255080 - 55255145
Alignment:
Q  210 caggggcgtccctgagggggtgcaaacagctcaaacgagctgggcctccctcaaggatgggcctca 275  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  55255080 caggggcgtccctgagggggtgcaaacagctcaaacgagctgggcctccctcaaggatgggcctca 55255145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 224 - 287
Target Start/End: Original strand, 1105445 - 1105508
Alignment:
Q  224 agggggtgcaaacagctcaaacgagctgggcctccctcaaggatgggcctcaagagtgggggtt 287  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1105445 agggggtgcaaacagctcaaacgagctgggcctccctcaaggatgggcctcaagagtgggggtt 1105508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 210 - 276
Target Start/End: Original strand, 47127981 - 47128047
Alignment:
Q  210 caggggcgtccctgagggggtgcaaacagctcaaacgagctgggcctccctcaaggatgggcctcaa 276  Q
    |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  47127981 caggggcgtccctgagggggtgcaaacagcccaaacgagctgggcctccctcaaggatgggcctcaa 47128047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 213 - 276
Target Start/End: Original strand, 17679220 - 17679283
Alignment:
Q  213 gggcgtccctgagggggtgcaaacagctcaaacgagctgggcctccctcaaggatgggcctcaa 276  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  17679220 gggcgtccctgagggggtgcaaacagctcaaacgagctgagcctccctcaaggatgggcctcaa 17679283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 210 - 276
Target Start/End: Complemental strand, 45560770 - 45560704
Alignment:
Q  210 caggggcgtccctgagggggtgcaaacagctcaaacgagctgggcctccctcaaggatgggcctcaa 276  Q
    ||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  45560770 caggggcgtccttgagggggtgcaaacagctcaaacgagctgggcctccctcaaagatgggcctcaa 45560704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 213 - 276
Target Start/End: Original strand, 48208453 - 48208516
Alignment:
Q  213 gggcgtccctgagggggtgcaaacagctcaaacgagctgggcctccctcaaggatgggcctcaa 276  Q
    |||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  48208453 gggcatccctgagggggtgcaaacagctcaaacgagttgggcctccctcaaggatgggcctcaa 48208516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 212 - 276
Target Start/End: Original strand, 13459786 - 13459850
Alignment:
Q  212 ggggcgtccctgagggggtgcaaacagctcaaacgagctgggcctccctcaaggatgggcctcaa 276  Q
    ||||||| |||||||||||||||||||||||||||||||| |||||||| |||||||||||||||    
T  13459786 ggggcgttcctgagggggtgcaaacagctcaaacgagctgagcctcccttaaggatgggcctcaa 13459850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 210 - 264
Target Start/End: Original strand, 32915297 - 32915351
Alignment:
Q  210 caggggcgtccctgagggggtgcaaacagctcaaacgagctgggcctccctcaag 264  Q
    ||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  32915297 caggggcgtccctgagggggtgcaaacagctcaaacgagttgggcctccctcaag 32915351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 226 - 275
Target Start/End: Complemental strand, 38209891 - 38209842
Alignment:
Q  226 ggggtgcaaacagctcaaacgagctgggcctccctcaaggatgggcctca 275  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38209891 ggggtgcaaacagctcaaacgagctgggcctccctcaaggatgggcctca 38209842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 219 - 276
Target Start/End: Complemental strand, 27596696 - 27596639
Alignment:
Q  219 ccctgagggggtgcaaacagctcaaacgagctgggcctccctcaaggatgggcctcaa 276  Q
    |||||||||||||| |||||||||||||||||||||||||| | ||||||||||||||    
T  27596696 ccctgagggggtgcgaacagctcaaacgagctgggcctcccccgaggatgggcctcaa 27596639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 229 - 276
Target Start/End: Complemental strand, 9579516 - 9579469
Alignment:
Q  229 gtgcaaacagctcaaacgagctgggcctccctcaaggatgggcctcaa 276  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||    
T  9579516 gtgcaaacagctcaaacgagctgggcctccctcaaggatgggcttcaa 9579469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 229 - 276
Target Start/End: Complemental strand, 9585211 - 9585164
Alignment:
Q  229 gtgcaaacagctcaaacgagctgggcctccctcaaggatgggcctcaa 276  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||    
T  9585211 gtgcaaacagctcaaacgagctgggcctccctcaaggatgggcttcaa 9585164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 152 - 210
Target Start/End: Complemental strand, 1644125 - 1644067
Alignment:
Q  152 cttcatatgctaataccccctctcaaactggaggttggtagatatctaccatcccaagc 210  Q
    |||||| |||| |||||||||| ||| ||||||||||||||||||||||||||||||||    
T  1644125 cttcatgtgctgataccccctcgcaagctggaggttggtagatatctaccatcccaagc 1644067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 226 - 276
Target Start/End: Complemental strand, 34769583 - 34769533
Alignment:
Q  226 ggggtgcaaacagctcaaacgagctgggcctccctcaaggatgggcctcaa 276  Q
    |||||||||| |||||||||||| |||||||||||||||||||||||||||    
T  34769583 ggggtgcaaatagctcaaacgagttgggcctccctcaaggatgggcctcaa 34769533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 210 - 257
Target Start/End: Original strand, 10978144 - 10978191
Alignment:
Q  210 caggggcgtccctgagggggtgcaaacagctcaaacgagctgggcctc 257  Q
    |||||||||||||||| ||||||||||||||||||||||||| |||||    
T  10978144 caggggcgtccctgagagggtgcaaacagctcaaacgagctgcgcctc 10978191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 219 - 269
Target Start/End: Original strand, 54779450 - 54779500
Alignment:
Q  219 ccctgagggggtgcaaacagctcaaacgagctgggcctccctcaaggatgg 269  Q
    ||||||||| ||||||||||||||| ||||||||||||||| |||||||||    
T  54779450 ccctgagggagtgcaaacagctcaaccgagctgggcctcccccaaggatgg 54779500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 213 - 254
Target Start/End: Complemental strand, 23510963 - 23510922
Alignment:
Q  213 gggcgtccctgagggggtgcaaacagctcaaacgagctgggc 254  Q
    ||||||||||||||||||||||||||||||||||| ||||||    
T  23510963 gggcgtccctgagggggtgcaaacagctcaaacgaactgggc 23510922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 219 - 276
Target Start/End: Original strand, 24969251 - 24969308
Alignment:
Q  219 ccctgagggggtgcaaacagctcaaacgagctgggcctccctcaaggatgggcctcaa 276  Q
    |||||||||||||||||||||||||  |||||||||||||||||   |||||||||||    
T  24969251 ccctgagggggtgcaaacagctcaacagagctgggcctccctcagtcatgggcctcaa 24969308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 223 - 276
Target Start/End: Complemental strand, 35780609 - 35780556
Alignment:
Q  223 gagggggtgcaaacagctcaaacgagctgggcctccctcaaggatgggcctcaa 276  Q
    ||||||||||||||||||||| ||||||||||||||| || |||| ||||||||    
T  35780609 gagggggtgcaaacagctcaaccgagctgggcctcccccacggataggcctcaa 35780556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 216 - 276
Target Start/End: Complemental strand, 54083538 - 54083478
Alignment:
Q  216 cgtccctgagggggtgcaaacagctcaaacgagctgggcctccctcaaggatgggcctcaa 276  Q
    ||||||||||||||||||||||||||||  ||||||||| |||||||   |||||||||||    
T  54083538 cgtccctgagggggtgcaaacagctcaatagagctgggcatccctcagtcatgggcctcaa 54083478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 222 - 276
Target Start/End: Original strand, 16844839 - 16844893
Alignment:
Q  222 tgagggggtgcaaacagctcaaacgagctgggcctccctcaaggatgggcctcaa 276  Q
    ||||||||||||||||||||||  |||||||||||||||||   |||||||||||    
T  16844839 tgagggggtgcaaacagctcaacagagctgggcctccctcagtcatgggcctcaa 16844893  T

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Target: chr4; HSP #25
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 220 - 262
Target Start/End: Original strand, 32128402 - 32128444
Alignment:
Q  220 cctgagggggtgcaaacagctcaaacgagctgggcctccctca 262  Q
    ||||||||||||||||||||||||  |||||||||||||||||    
T  32128402 cctgagggggtgcaaacagctcaacagagctgggcctccctca 32128444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 222 - 276
Target Start/End: Complemental strand, 37777513 - 37777459
Alignment:
Q  222 tgagggggtgcaaacagctcaaacgagctgggcctccctcaaggatgggcctcaa 276  Q
    ||||||||||||||||||||||  ||||||| ||||||||||  |||||||||||    
T  37777513 tgagggggtgcaaacagctcaacagagctggacctccctcaatcatgggcctcaa 37777459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 151 - 210
Target Start/End: Original strand, 9278161 - 9278218
Alignment:
Q  151 tcttcatatgctaataccccctctcaaactggaggttggtagatatctaccatcccaagc 210  Q
    |||||||||||||||| |||| |  || ||||||||||||||||| ||||||||||||||    
T  9278161 tcttcatatgctaataaccccac--aagctggaggttggtagatacctaccatcccaagc 9278218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 246 - 276
Target Start/End: Complemental strand, 23510917 - 23510887
Alignment:
Q  246 gagctgggcctccctcaaggatgggcctcaa 276  Q
    |||||||||||||||||||||||||||||||    
T  23510917 gagctgggcctccctcaaggatgggcctcaa 23510887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 226 - 276
Target Start/End: Original strand, 40089340 - 40089390
Alignment:
Q  226 ggggtgcaaacagctcaaacgagctgggcctccctcaaggatgggcctcaa 276  Q
    ||||||||||||||||||  |||||||||||||||||   |||||||||||    
T  40089340 ggggtgcaaacagctcaacagagctgggcctccctcagtcatgggcctcaa 40089390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 221 - 262
Target Start/End: Complemental strand, 2791029 - 2790988
Alignment:
Q  221 ctgagggggtgcaaacagctcaaacgagctgggcctccctca 262  Q
    |||||||||||||||||||||||  |||||||| ||||||||    
T  2791029 ctgagggggtgcaaacagctcaacagagctgggtctccctca 2790988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 240 - 276
Target Start/End: Original strand, 51964204 - 51964240
Alignment:
Q  240 tcaaacgagctgggcctccctcaaggatgggcctcaa 276  Q
    |||||| |||| |||||||||||||||||||||||||    
T  51964204 tcaaacaagctaggcctccctcaaggatgggcctcaa 51964240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 70; Significance: 1e-31; HSPs: 23)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 210 - 287
Target Start/End: Complemental strand, 24711208 - 24711131
Alignment:
Q  210 caggggcgtccctgagggggtgcaaacagctcaaacgagctgggcctccctcaaggatgggcctcaagagtgggggtt 287  Q
    |||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||    
T  24711208 caggggcgtccctgagggggtgcaaacagctcaaacaagctgggcctcccccaaggatgggcctcaagagtgggggtt 24711131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 208 - 287
Target Start/End: Complemental strand, 30832734 - 30832656
Alignment:
Q  208 agcaggggcgtccctgagggggtgcaaacagctcaaacgagctgggcctccctcaaggatgggcctcaagagtgggggtt 287  Q
    ||||||||||||| ||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  30832734 agcaggggcgtccttgagggg-tgcaaacagctcaaatgagctgggcctccctcaaggatgggcctcaagagtgggggtt 30832656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 209 - 275
Target Start/End: Original strand, 21479283 - 21479349
Alignment:
Q  209 gcaggggcgtccctgagggggtgcaaacagctcaaacgagctgggcctccctcaaggatgggcctca 275  Q
    |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  21479283 gcaggggcgtccctgagggggtgcaaacagctaaaacgagctgggcctccctcaaggatgggcctca 21479349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 210 - 275
Target Start/End: Complemental strand, 13727715 - 13727650
Alignment:
Q  210 caggggcgtccctgagggggtgcaaacagctcaaacgagctgggcctccctcaaggatgggcctca 275  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  13727715 caggggcgtccctgagggggtgcaaacagctcaaacgagctgggcctccctcaaagatgggcctca 13727650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 212 - 276
Target Start/End: Complemental strand, 23070953 - 23070889
Alignment:
Q  212 ggggcgtccctgagggggtgcaaacagctcaaacgagctgggcctccctcaaggatgggcctcaa 276  Q
    ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23070953 ggggcgtccttgagggggtgcaaacagctcaaacgagctgggcctccctcaaggatgggcctcaa 23070889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 208 - 267
Target Start/End: Complemental strand, 27314832 - 27314773
Alignment:
Q  208 agcaggggcgtccctgagggggtgcaaacagctcaaacgagctgggcctccctcaaggat 267  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27314832 agcaggggcgtccctgagggggtgcaaacagctcaaacgagctgggcctccctcaaggat 27314773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 210 - 276
Target Start/End: Complemental strand, 12083706 - 12083640
Alignment:
Q  210 caggggcgtccctgagggggtgcaaacagctcaaacgagctgggcctccctcaaggatgggcctcaa 276  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  12083706 caggggcgtccttgagggggtgcaaacagctcaaacgagctgggccttcctcaaggatgggcctcaa 12083640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 210 - 276
Target Start/End: Complemental strand, 19741289 - 19741223
Alignment:
Q  210 caggggcgtccctgagggggtgcaaacagctcaaacgagctgggcctccctcaaggatgggcctcaa 276  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  19741289 cagggacgtccctgagggggtgcaaacagctcaaacgagctgggcctccctcaaggatggacctcaa 19741223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 213 - 271
Target Start/End: Original strand, 21280336 - 21280394
Alignment:
Q  213 gggcgtccctgagggggtgcaaacagctcaaacgagctgggcctccctcaaggatgggc 271  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  21280336 gggcgtccctgagggggtgcaaacagctcaaacgagctgggcctccctcaaggatgggc 21280394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 210 - 275
Target Start/End: Original strand, 33773900 - 33773964
Alignment:
Q  210 caggggcgtccctgagggggtgcaaacagctcaaacgagctgggcctccctcaaggatgggcctca 275  Q
    |||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||    
T  33773900 caggggcgtccctgagggggtgcaaaca-ctcaaatgagctgggcctccctcaaggatgggcctca 33773964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 208 - 267
Target Start/End: Complemental strand, 27579143 - 27579084
Alignment:
Q  208 agcaggggcgtccctgagggggtgcaaacagctcaaacgagctgggcctccctcaaggat 267  Q
    ||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||    
T  27579143 agcaggggcgtccctaagggggtgcaaccagctcaaacgagctgggcctccctcaaggat 27579084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 210 - 276
Target Start/End: Complemental strand, 1156083 - 1156017
Alignment:
Q  210 caggggcgtccctgagggggtgcaaacagctcaaacgagctgggcctccctcaaggatgggcctcaa 276  Q
    ||||||||  ||||||||||||||||||||||||||||||| || |||||| |||||||||||||||    
T  1156083 caggggcgctcctgagggggtgcaaacagctcaaacgagctaggtctcccttaaggatgggcctcaa 1156017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 47 - 92
Target Start/End: Original strand, 17177782 - 17177827
Alignment:
Q  47 tatatacatcaactagatgccagctcagcatagcaaccgtaactaa 92  Q
    |||||| |||||||||||||||||||||||||||||||||||||||    
T  17177782 tatatatatcaactagatgccagctcagcatagcaaccgtaactaa 17177827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 151 - 206
Target Start/End: Complemental strand, 22845411 - 22845356
Alignment:
Q  151 tcttcatatgctaataccccctctcaaactggaggttggtagatatctaccatccc 206  Q
    |||||||||| | |||||||||| |||||||| |||||||||||||||||||||||    
T  22845411 tcttcatatgttgataccccctcgcaaactggtggttggtagatatctaccatccc 22845356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 219 - 276
Target Start/End: Original strand, 17353768 - 17353825
Alignment:
Q  219 ccctgagggggtgcaaacagctcaaacgagctgggcctccctcaaggatgggcctcaa 276  Q
    |||||||||||||||||||||||||  |||||||||||||||||   |||||||||||    
T  17353768 ccctgagggggtgcaaacagctcaacagagctgggcctccctcagtcatgggcctcaa 17353825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 219 - 276
Target Start/End: Original strand, 19986975 - 19987032
Alignment:
Q  219 ccctgagggggtgcaaacagctcaaacgagctgggcctccctcaaggatgggcctcaa 276  Q
    |||| ||||||||||||||||||||  ||||||||||||||||||  |||||||||||    
T  19986975 ccctaagggggtgcaaacagctcaacagagctgggcctccctcaattatgggcctcaa 19987032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 157 - 210
Target Start/End: Complemental strand, 26621422 - 26621369
Alignment:
Q  157 tatgctaataccccctctcaaactggaggttggtagatatctaccatcccaagc 210  Q
    |||||||||| |||||| ||| |||||||||||||| |||||||||||||||||    
T  26621422 tatgctaataacccctcgcaagctggaggttggtagttatctaccatcccaagc 26621369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 157 - 210
Target Start/End: Complemental strand, 26727401 - 26727348
Alignment:
Q  157 tatgctaataccccctctcaaactggaggttggtagatatctaccatcccaagc 210  Q
    |||||||||| |||||| ||| |||||||||||||| |||||||||||||||||    
T  26727401 tatgctaataacccctcgcaagctggaggttggtagttatctaccatcccaagc 26727348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 219 - 276
Target Start/End: Complemental strand, 27788979 - 27788922
Alignment:
Q  219 ccctgagggggtgcaaacagctcaaacgagctgggcctccctcaaggatgggcctcaa 276  Q
    |||||||||||||||||||||||||  |||||||||||||||||   |||||||||||    
T  27788979 ccctgagggggtgcaaacagctcaacagagctgggcctccctcagtcatgggcctcaa 27788922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 216 - 262
Target Start/End: Complemental strand, 235519 - 235473
Alignment:
Q  216 cgtccctgagggggtgcaaacagctcaaacgagctgggcctccctca 262  Q
    ||||||||||||||||||||||||| ||  |||||||||||||||||    
T  235519 cgtccctgagggggtgcaaacagcttaacagagctgggcctccctca 235473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 219 - 276
Target Start/End: Complemental strand, 20712009 - 20711952
Alignment:
Q  219 ccctgagggggtgcaaacagctcaaacgagctgggcctccctcaaggatgggcctcaa 276  Q
    |||||||| ||||||||||||||||  |||||||||||||||||   |||||||||||    
T  20712009 ccctgaggaggtgcaaacagctcaacagagctgggcctccctcagtcatgggcctcaa 20711952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 165 - 210
Target Start/End: Original strand, 8095377 - 8095422
Alignment:
Q  165 taccccctctcaaactggaggttggtagatatctaccatcccaagc 210  Q
    ||||||||| ||| |||||||||||||||| ||| |||||||||||    
T  8095377 taccccctcacaagctggaggttggtagatgtcttccatcccaagc 8095422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 219 - 275
Target Start/End: Complemental strand, 11081740 - 11081684
Alignment:
Q  219 ccctgagggggtgcaaacagctcaaacgagctgggcctccctcaaggatgggcctca 275  Q
    |||| ||||||||||||||||||||  ||||| ||||||||| | | ||||||||||    
T  11081740 cccttagggggtgcaaacagctcaatggagctaggcctccctaaggcatgggcctca 11081684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0070 (Bit Score: 64; Significance: 6e-28; HSPs: 1)
Name: scaffold0070
Description:

Target: scaffold0070; HSP #1
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 209 - 276
Target Start/End: Original strand, 1010 - 1077
Alignment:
Q  209 gcaggggcgtccctgagggggtgcaaacagctcaaacgagctgggcctccctcaaggatgggcctcaa 276  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  1010 gcaggggcgtccctgagggggtgcaaacagctcaaacgagctgggcctccctcaaggatggacctcaa 1077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0001 (Bit Score: 48; Significance: 2e-18; HSPs: 2)
Name: scaffold0001
Description:

Target: scaffold0001; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 208 - 255
Target Start/End: Original strand, 181433 - 181480
Alignment:
Q  208 agcaggggcgtccctgagggggtgcaaacagctcaaacgagctgggcc 255  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||    
T  181433 agcaggggcgtccctgagggggtgcaaacagctcaaacgagctgggcc 181480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0001; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 248 - 287
Target Start/End: Original strand, 181851 - 181890
Alignment:
Q  248 gctgggcctccctcaaggatgggcctcaagagtgggggtt 287  Q
    ||||||||||||||||||||||| ||||||||||||||||    
T  181851 gctgggcctccctcaaggatgggtctcaagagtgggggtt 181890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0102 (Bit Score: 38; Significance: 0.000000000002; HSPs: 2)
Name: scaffold0102
Description:

Target: scaffold0102; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 161 - 210
Target Start/End: Complemental strand, 2355 - 2306
Alignment:
Q  161 ctaataccccctctcaaactggaggttggtagatatctaccatcccaagc 210  Q
    ||||||||||| | ||| ||||||||||||||||||||||||||||||||    
T  2355 ctaatacccccccacaagctggaggttggtagatatctaccatcccaagc 2306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0102; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 161 - 210
Target Start/End: Complemental strand, 6708 - 6659
Alignment:
Q  161 ctaataccccctctcaaactggaggttggtagatatctaccatcccaagc 210  Q
    ||||||||||| | ||| ||||||||||||||||||||||||||||||||    
T  6708 ctaatacccccccacaagctggaggttggtagatatctaccatcccaagc 6659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0039 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: scaffold0039
Description:

Target: scaffold0039; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 219 - 276
Target Start/End: Original strand, 106388 - 106445
Alignment:
Q  219 ccctgagggggtgcaaacagctcaaacgagctgggcctccctcaaggatgggcctcaa 276  Q
    ||||||| |||||||||||||||||  |||||||||||||||||   |||||||||||    
T  106388 ccctgagagggtgcaaacagctcaacagagctgggcctccctcagtcatgggcctcaa 106445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0027 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0027
Description:

Target: scaffold0027; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 210 - 258
Target Start/End: Original strand, 4149 - 4197
Alignment:
Q  210 caggggcgtccctgagggggtgcaaacagctcaaacgagctgggcctcc 258  Q
    ||||| || ||||||| |||||||||||||||||  |||||||||||||    
T  4149 cagggccggccctgagagggtgcaaacagctcaacagagctgggcctcc 4197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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