View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15984_low_24 (Length: 306)
Name: NF15984_low_24
Description: NF15984
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15984_low_24 |
 | |
|
| [»] scaffold1005 (1 HSPs) |
| | |
|
Alignment Details
Target: chr1 (Bit Score: 220; Significance: 1e-121; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 9 - 288
Target Start/End: Complemental strand, 44180021 - 44179742
Alignment:
| Q |
9 |
gacatcatcaccacaaaaaccataatgaaataaacaatgaagtagcatctgacctgattttcttgagtctctcaagatcatccctcagcttcatgtcaag |
108 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||| || |||||| ||| |||||||||||||| | |||||| |||| ||||||||| || |
|
|
| T |
44180021 |
gacataatcaccacaaaaaccataatgaaataaacaatgaagtaacaactgaccggatcttcttgagtctctccaaatcatctctcaacttcatgtcgag |
44179922 |
T |
|
| Q |
109 |
ttgattggatacaacttgagagaattttccatccttgtaatccttctttctgttcaaaaaccaatctggaaccttgaattgacgaggatttgcaaccact |
208 |
Q |
| |
|
||||||||| ||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||| |
|
|
| T |
44179921 |
ttgattggagacaacctgagagaatttcccatccttgtaatccttctttctgttcaaaaaccaatctggaaccttaaattgacgaggattcgcaaccact |
44179822 |
T |
|
| Q |
209 |
gtcataatattatccaactctgcagcactcaattcaccagccctaaaaatccaacaacaaaaacaacccatttcaatatc |
288 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44179821 |
gtcataatattatccaactctgcagcactcaattcaccagccctaaaaatccaacaacaaaaacaacccatttcaatatc |
44179742 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 9 - 288
Target Start/End: Complemental strand, 44207152 - 44206873
Alignment:
| Q |
9 |
gacatcatcaccacaaaaaccataatgaaataaacaatgaagtagcatctgacctgattttcttgagtctctcaagatcatccctcagcttcatgtcaag |
108 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||| || |||||| ||| |||||||||||||| | |||||| |||| ||||||||| || |
|
|
| T |
44207152 |
gacataatcaccacaaaaaccataatgaaataaacaatgaagtaacaactgaccggatcttcttgagtctctccaaatcatctctcaacttcatgtcgag |
44207053 |
T |
|
| Q |
109 |
ttgattggatacaacttgagagaattttccatccttgtaatccttctttctgttcaaaaaccaatctggaaccttgaattgacgaggatttgcaaccact |
208 |
Q |
| |
|
||||||||| ||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||| |
|
|
| T |
44207052 |
ttgattggagacaacctgagagaatttcccatccttgtaatccttctttctgttcaaaaaccaatctggaaccttaaattgacgaggattcgcaaccact |
44206953 |
T |
|
| Q |
209 |
gtcataatattatccaactctgcagcactcaattcaccagccctaaaaatccaacaacaaaaacaacccatttcaatatc |
288 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44206952 |
gtcataatattatccaactctgcagcactcaattcaccagccctaaaaatccaacaacaaaaacaacccatttcaatatc |
44206873 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 153; E-Value: 4e-81
Query Start/End: Original strand, 68 - 252
Target Start/End: Complemental strand, 41556399 - 41556215
Alignment:
| Q |
68 |
ttcttgagtctctcaagatcatccctcagcttcatgtcaagttgattggatacaacttgagagaattttccatccttgtaatccttctttctgttcaaaa |
167 |
Q |
| |
|
|||| ||||||||| | ||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
41556399 |
ttctcgagtctctccaaatcatccctcagcttcatgtcaaattgattggatacaacttgagagaatttcccatccttgtaatccttctttctgttcaaaa |
41556300 |
T |
|
| Q |
168 |
accaatctggaaccttgaattgacgaggatttgcaaccactgtcataatattatccaactctgcagcactcaattcaccagccct |
252 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
41556299 |
accaatctggaaccttgaattgacgaggattcgcaaccactatcataatattatccaactctgcagcacttaattcaccagccct |
41556215 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 165; Significance: 3e-88; HSPs: 7)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 165; E-Value: 3e-88
Query Start/End: Original strand, 64 - 252
Target Start/End: Complemental strand, 11497140 - 11496952
Alignment:
| Q |
64 |
gattttcttgagtctctcaagatcatccctcagcttcatgtcaagttgattggatacaacttgagagaattttccatccttgtaatccttctttctgttc |
163 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||| |||||||||||| |
|
|
| T |
11497140 |
gattttcttgagtctctcaggatcatccctcagcttcatgtcaagttgattggatacaagttgagagaatttgccatccttgtaatctttctttctgttc |
11497041 |
T |
|
| Q |
164 |
aaaaaccaatctggaaccttgaattgacgaggatttgcaaccactgtcataatattatccaactctgcagcactcaattcaccagccct |
252 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
11497040 |
aaaaaccaatctggaaccttgaattgacgaggattcgcaaccactgtcataatattatccaactctgcagcactcaatttaccagccct |
11496952 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 165; E-Value: 3e-88
Query Start/End: Original strand, 64 - 252
Target Start/End: Complemental strand, 11504467 - 11504279
Alignment:
| Q |
64 |
gattttcttgagtctctcaagatcatccctcagcttcatgtcaagttgattggatacaacttgagagaattttccatccttgtaatccttctttctgttc |
163 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||| |
|
|
| T |
11504467 |
gattttcttgagtctctcaagatcatccctgagcttcatgtcaagttgattggatacaacttgagagaatttgccatccttgtaatctttctttctgttc |
11504368 |
T |
|
| Q |
164 |
aaaaaccaatctggaaccttgaattgacgaggatttgcaaccactgtcataatattatccaactctgcagcactcaattcaccagccct |
252 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
11504367 |
aaaaaccaatatggaaccttgaattgacgaggattcgcaaccactgtcataatattatccaactctgcagcactcaatttaccagccct |
11504279 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 165; E-Value: 3e-88
Query Start/End: Original strand, 64 - 252
Target Start/End: Complemental strand, 11511861 - 11511673
Alignment:
| Q |
64 |
gattttcttgagtctctcaagatcatccctcagcttcatgtcaagttgattggatacaacttgagagaattttccatccttgtaatccttctttctgttc |
163 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||| |
|
|
| T |
11511861 |
gattttcttgagtctctcaagatcatccctgagcttcatgtcaagttgattggatacaacttgagagaatttgccatccttgtaatctttctttctgttc |
11511762 |
T |
|
| Q |
164 |
aaaaaccaatctggaaccttgaattgacgaggatttgcaaccactgtcataatattatccaactctgcagcactcaattcaccagccct |
252 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
11511761 |
aaaaaccaatatggaaccttgaattgacgaggattcgcaaccactgtcataatattatccaactctgcagcactcaatttaccagccct |
11511673 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 165; E-Value: 3e-88
Query Start/End: Original strand, 64 - 252
Target Start/End: Complemental strand, 11519237 - 11519049
Alignment:
| Q |
64 |
gattttcttgagtctctcaagatcatccctcagcttcatgtcaagttgattggatacaacttgagagaattttccatccttgtaatccttctttctgttc |
163 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||| |
|
|
| T |
11519237 |
gattttcttgagtctctcaagatcatccctgagcttcatgtcaagttgattggatacaacttgagagaatttgccatccttgtaatctttctttctgttc |
11519138 |
T |
|
| Q |
164 |
aaaaaccaatctggaaccttgaattgacgaggatttgcaaccactgtcataatattatccaactctgcagcactcaattcaccagccct |
252 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
11519137 |
aaaaaccaatatggaaccttgaattgacgaggattcgcaaccactgtcataatattatccaactctgcagcactcaatttaccagccct |
11519049 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 165; E-Value: 3e-88
Query Start/End: Original strand, 64 - 252
Target Start/End: Complemental strand, 11526642 - 11526454
Alignment:
| Q |
64 |
gattttcttgagtctctcaagatcatccctcagcttcatgtcaagttgattggatacaacttgagagaattttccatccttgtaatccttctttctgttc |
163 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||| |
|
|
| T |
11526642 |
gattttcttgagtctctcaagatcatccctgagcttcatgtcaagttgattggatacaacttgagagaatttgccatccttgtaatctttctttctgttc |
11526543 |
T |
|
| Q |
164 |
aaaaaccaatctggaaccttgaattgacgaggatttgcaaccactgtcataatattatccaactctgcagcactcaattcaccagccct |
252 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
11526542 |
aaaaaccaatatggaaccttgaattgacgaggattcgcaaccactgtcataatattatccaactctgcagcactcaatttaccagccct |
11526454 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 157; E-Value: 2e-83
Query Start/End: Original strand, 64 - 252
Target Start/End: Complemental strand, 11534052 - 11533864
Alignment:
| Q |
64 |
gattttcttgagtctctcaagatcatccctcagcttcatgtcaagttgattggatacaacttgagagaattttccatccttgtaatccttctttctgttc |
163 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||| |
|
|
| T |
11534052 |
gattttcttgagtctctcaagatcatccctgagcttcctgtcaagttgattggatacaacttgagagaatttgccatccttgtaatctttctttctgttc |
11533953 |
T |
|
| Q |
164 |
aaaaaccaatctggaaccttgaattgacgaggatttgcaaccactgtcataatattatccaactctgcagcactcaattcaccagccct |
252 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||| ||||||||| |
|
|
| T |
11533952 |
aaaaaccaatatggaaccttgaattgacgaggattcgcaaccactgtcataatattatccaattctgcagcactcaatttaccagccct |
11533864 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 157; E-Value: 2e-83
Query Start/End: Original strand, 64 - 252
Target Start/End: Complemental strand, 11541469 - 11541281
Alignment:
| Q |
64 |
gattttcttgagtctctcaagatcatccctcagcttcatgtcaagttgattggatacaacttgagagaattttccatccttgtaatccttctttctgttc |
163 |
Q |
| |
|
|||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||| ||||| |||||||||||||| |||||||||||| |
|
|
| T |
11541469 |
gattttcttgagtctctcaagatcatccctgaatttcatgtcaagttgattggatacaacttgagaaaatttgccatccttgtaatctttctttctgttc |
11541370 |
T |
|
| Q |
164 |
aaaaaccaatctggaaccttgaattgacgaggatttgcaaccactgtcataatattatccaactctgcagcactcaattcaccagccct |
252 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
11541369 |
aaaaaccaatctggaaccttgaattgacgaggattcgcaaccactgtcataatattatccaactctgcagcactcaatttaccagccct |
11541281 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1005 (Bit Score: 153; Significance: 4e-81; HSPs: 1)
Name: scaffold1005
Description:
Target: scaffold1005; HSP #1
Raw Score: 153; E-Value: 4e-81
Query Start/End: Original strand, 64 - 252
Target Start/End: Complemental strand, 2612 - 2424
Alignment:
| Q |
64 |
gattttcttgagtctctcaagatcatccctcagcttcatgtcaagttgattggatacaacttgagagaattttccatccttgtaatccttctttctgttc |
163 |
Q |
| |
|
|||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||| |
|
|
| T |
2612 |
gattttcttgagtctctcaagatcatccctgaatttcatgtcaagttgattggatacaacttgagagaatttgccatccttgtaatctttctttctgttc |
2513 |
T |
|
| Q |
164 |
aaaaaccaatctggaaccttgaattgacgaggatttgcaaccactgtcataatattatccaactctgcagcactcaattcaccagccct |
252 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||| ||||||||| |
|
|
| T |
2512 |
aaaaaccaatttggaaccttgaattgacgaggattcgcaaccactgtcataatattatccaattctgcagcactcaatttaccagccct |
2424 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 117; Significance: 1e-59; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 10 - 206
Target Start/End: Original strand, 4860324 - 4860519
Alignment:
| Q |
10 |
acatcatcaccacaaaaaccataatgaaataaacaatgaagtagcatctgacctgattttcttgagtctctcaagatcatccctcagcttcatgtcaagt |
109 |
Q |
| |
|
|||||||| |||||||||||||||| ||||||||||| ||| ||| |||||||| ||||||||||||||| | || ||| |||| ||||||||||||| |
|
|
| T |
4860324 |
acatcatcgccacaaaaaccataat-aaataaacaataaagcagcgtctgacctatgtttcttgagtctctccaaattatctctcaacttcatgtcaagt |
4860422 |
T |
|
| Q |
110 |
tgattggatacaacttgagagaattttccatccttgtaatccttctttctgttcaaaaaccaatctggaaccttgaattgacgaggatttgcaacca |
206 |
Q |
| |
|
|| ||||| ||||||||||| |||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
4860423 |
tggttggagacaacttgagaaaattttccatccttgtaatccttcttcctattcaaaaaccaatctggaaccttgaattgacgaggattcgcaacca |
4860519 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 207 - 258
Target Start/End: Original strand, 4860547 - 4860598
Alignment:
| Q |
207 |
ctgtcataatattatccaactctgcagcactcaattcaccagccctaaaaat |
258 |
Q |
| |
|
||||||| || ||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
4860547 |
ctgtcattatgttatccaactctgcagcactcaactcaccagccctaaaaat |
4860598 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 87; Significance: 1e-41; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 85 - 259
Target Start/End: Complemental strand, 14927273 - 14927099
Alignment:
| Q |
85 |
atcatccctcagcttcatgtcaagttgattggatacaacttgagagaattttccatccttgtaatccttctttctgttcaaaaaccaatctggaaccttg |
184 |
Q |
| |
|
||||||||||| ||||||||| |||||||| || ||||||||||| || || |||||||||||||||||||||||||||||||||||||| || |||||| |
|
|
| T |
14927273 |
atcatccctcaacttcatgtccagttgatttgaaacaacttgagaaaacttgccatccttgtaatccttctttctgttcaaaaaccaatcagggaccttg |
14927174 |
T |
|
| Q |
185 |
aattgacgaggatttgcaaccactgtcataatattatccaactctgcagcactcaattcaccagccctaaaaatc |
259 |
Q |
| |
|
||||| | ||| || |||||||| |||||||| || ||||| || |||||| |||| |||||||| || |||||| |
|
|
| T |
14927173 |
aattgcctagggttggcaaccacagtcataatgttctccaattcagcagcagtcaactcaccagctctgaaaatc |
14927099 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 163 - 252
Target Start/End: Complemental strand, 8474579 - 8474490
Alignment:
| Q |
163 |
caaaaaccaatctggaaccttgaattgacgaggatttgcaaccactgtcataatattatccaactctgcagcactcaattcaccagccct |
252 |
Q |
| |
|
||||||||||| |||||||||||||||| || |||||||| | | ||| || |||||||||||| || ||| |||||||||||||||| |
|
|
| T |
8474579 |
caaaaaccaatttggaaccttgaattgattagagtttgcaactattttcagaaaattatccaactccgcggcattcaattcaccagccct |
8474490 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University