View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15984_low_25 (Length: 300)
Name: NF15984_low_25
Description: NF15984
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15984_low_25 |
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Alignment Details
Target: chr1 (Bit Score: 259; Significance: 1e-144; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 259; E-Value: 1e-144
Query Start/End: Original strand, 18 - 284
Target Start/End: Complemental strand, 10299861 - 10299595
Alignment:
| Q |
18 |
aggaaatgaatggacagcaagtgcacacataatcacagctgtgattggttctggagtgctgtctttggcatgggctattgcacaacttggatggattgct |
117 |
Q |
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| T |
10299861 |
aggaaatgaatggacagcaagtgcacacataatcacagctgtgattggttctggagtgctgtctttggcatgggctattgcacaacttggatggattgct |
10299762 |
T |
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| Q |
118 |
ggaccatcaatgatgcttcttttctcgtttgttacttactacacctccactcttctttctgtttgttaccgtaccggtgatcaactcaatgggaaaagaa |
217 |
Q |
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| T |
10299761 |
ggaccatcaatgatgcttcttttctcgtttgttacttactacacctccactcttctttctgtttgttatcgtaccggtgatcaactcaatggcaaaagaa |
10299662 |
T |
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| Q |
218 |
actacacttacactgatgctgttagagcataccttggtggctttaagtacaagatttgtggagttgt |
284 |
Q |
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| T |
10299661 |
actacacttacactgatgctgttagagcataccttggtggctttaagtacaagatttgtggagttgt |
10299595 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 37 - 116
Target Start/End: Complemental strand, 47919911 - 47919832
Alignment:
| Q |
37 |
agtgcacacataatcacagctgtgattggttctggagtgctgtctttggcatgggctattgcacaacttggatggattgc |
116 |
Q |
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| T |
47919911 |
agtgcacacatagtgactgctgtgataggatctggagtgttgtcattggcatgggctgttgcacaattgggctggattgc |
47919832 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 34 - 116
Target Start/End: Complemental strand, 47911100 - 47911018
Alignment:
| Q |
34 |
gcaagtgcacacataatcacagctgtgattggttctggagtgctgtctttggcatgggctattgcacaacttggatggattgc |
116 |
Q |
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| T |
47911100 |
gcaagtgcacacatagtgactgctgtaataggatctggagtgttgtcattggcatgggctgttgcacaattgggttggattgc |
47911018 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 52; Significance: 8e-21; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 28 - 119
Target Start/End: Original strand, 40203594 - 40203685
Alignment:
| Q |
28 |
tggacagcaagtgcacacataatcacagctgtgattggttctggagtgctgtctttggcatgggctattgcacaacttggatggattgctgg |
119 |
Q |
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| T |
40203594 |
tggactgcaagtgcacatgtaataacagctgtgatagggtctggagtgctgtctctagcttgggctattgctcaacttggatggattgctgg |
40203685 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 28 - 119
Target Start/End: Original strand, 40199431 - 40199522
Alignment:
| Q |
28 |
tggacagcaagtgcacacataatcacagctgtgattggttctggagtgctgtctttggcatgggctattgcacaacttggatggattgctgg |
119 |
Q |
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| T |
40199431 |
tggactgcaagtgcacatgtaataacagctgtggtagggtctggagtgctgtctctatcttgggctattgctcaacttggatggattgctgg |
40199522 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 28 - 119
Target Start/End: Original strand, 40207750 - 40207841
Alignment:
| Q |
28 |
tggacagcaagtgcacacataatcacagctgtgattggttctggagtgctgtctttggcatgggctattgcacaacttggatggattgctgg |
119 |
Q |
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| T |
40207750 |
tggactgcaagtgcacatgtaataacagctgtggtagggtctggagttctgtctctagcttgggctattgctcaactcggatggattgctgg |
40207841 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 46 - 115
Target Start/End: Complemental strand, 44307354 - 44307285
Alignment:
| Q |
46 |
ataatcacagctgtgattggttctggagtgctgtctttggcatgggctattgcacaacttggatggattg |
115 |
Q |
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| T |
44307354 |
ataataacagctgtgattgggtctggggtgctatccttagcatgggctactgcacaattgggttggattg |
44307285 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 27 - 124
Target Start/End: Original strand, 42369771 - 42369868
Alignment:
| Q |
27 |
atggacagcaagtgcacacataatcacagctgtgattggttctggagtgctgtctttggcatgggctattgcacaacttggatggattgctggaccat |
124 |
Q |
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| T |
42369771 |
atggacagcagtagcacacatagtgacaggggtgataggatcaggagtgttatctttgccatggagcattgcacaacttggatggattgttggaccat |
42369868 |
T |
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