View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15984_low_26 (Length: 293)

Name: NF15984_low_26
Description: NF15984
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15984_low_26
NF15984_low_26
[»] chr1 (3 HSPs)
chr1 (20-275)||(8641744-8642000)
chr1 (34-70)||(8641263-8641299)
chr1 (112-164)||(45500663-45500715)
[»] chr3 (5 HSPs)
chr3 (71-275)||(52717556-52717761)
chr3 (71-275)||(32558218-32558424)
chr3 (133-275)||(7050460-7050602)
chr3 (71-209)||(53343105-53343243)
chr3 (70-106)||(27982330-27982366)
[»] chr5 (1 HSPs)
chr5 (71-209)||(38558946-38559085)
[»] chr8 (1 HSPs)
chr8 (71-209)||(40600567-40600705)
[»] chr7 (1 HSPs)
chr7 (69-132)||(22297883-22297946)
[»] chr2 (1 HSPs)
chr2 (78-123)||(10174693-10174738)


Alignment Details
Target: chr1 (Bit Score: 184; Significance: 1e-99; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 184; E-Value: 1e-99
Query Start/End: Original strand, 20 - 275
Target Start/End: Complemental strand, 8642000 - 8641744
Alignment:
Q  20 cacctaaaagttaaagataagtttttaactttaatttagttaatttaacttggtggattctagggtgaaccattaactaagtggttccccagtggaccac 119  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||  ||  ||||||||    
T  8642000 cacctaaaagttagagataagtttttaactttaatttagttaatttaacttggtggattctagggtgaaccatcaactaagtggttttccgatggaccac 8641901  T
Q  120 ttttgtacaccattcgatttaaattaaagatttagatgtgttagacnnnnnnntgagaacacaagtatacttatgcacactatccttgttcatttaaaaa 219  Q
    |||||||||||||| |||||||||||||| ||||||||||||||||       |||||||||||||||||||  | ||||||||||||||||||||||||    
T  8641900 ttttgtacaccatttgatttaaattaaaggtttagatgtgttagacaaaaaaatgagaacacaagtatacttcaggacactatccttgttcatttaaaaa 8641801  T
Q  220 ccactgtttccttat-aaaaaagtctccttttacttcacccctccaattcaaaatct 275  Q
    ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  8641800 ccactgtttccttataaaaaaagtctccttttacttcacccctccaattcaaaatct 8641744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 34 - 70
Target Start/End: Complemental strand, 8641299 - 8641263
Alignment:
Q  34 agataagtttttaactttaatttagttaatttaactt 70  Q
    |||||||||||||||||||||||||||||||||||||    
T  8641299 agataagtttttaactttaatttagttaatttaactt 8641263  T

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Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 112 - 164
Target Start/End: Complemental strand, 45500715 - 45500663
Alignment:
Q  112 tggaccacttttgtacaccattcgatttaaattaaagatttagatgtgttaga 164  Q
    |||||||||||| |||| ||| ||||||||||||||  |||| ||||||||||    
T  45500715 tggaccacttttatacatcatccgatttaaattaaaagtttaaatgtgttaga 45500663  T

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Target: chr3 (Bit Score: 133; Significance: 3e-69; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 133; E-Value: 3e-69
Query Start/End: Original strand, 71 - 275
Target Start/End: Complemental strand, 52717761 - 52717556
Alignment:
Q  71 ggtggattctagggtgaaccattaactaagtggttccccagtggaccacttttgtacaccattcgatttaaattaaagatttagatgtgttagacnnnnn 170  Q
    |||||||||||||||||||||| |||||| ||||||     ||||||||||||||||||||||||||||||||||||| ||||||||||||||||         
T  52717761 ggtggattctagggtgaaccatcaactaaatggttcatggatggaccacttttgtacaccattcgatttaaattaaaggtttagatgtgttagacaaaaa 52717662  T
Q  171 nntgagaacacaagtatacttatgcacactatccttgttcatttaaaaaccactgtttccttataa-aaaagtctccttttacttcacccctccaattca 269  Q
      ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||| ||||||||||    
T  52717661 aatgagaacacaagtatacttctgcacactatccttgttcatttaaaaaccactgtttccttataaaaaaaatctccttttacttcacctctccaattca 52717562  T
Q  270 aaatct 275  Q
    ||||||    
T  52717561 aaatct 52717556  T

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Target: chr3; HSP #2
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 71 - 275
Target Start/End: Original strand, 32558218 - 32558424
Alignment:
Q  71 ggtggattctagggtgaaccattaactaagtggttccccagtggaccacttttgtacaccattcgatttaaattaaagatttagatgtgttagacnnnnn 170  Q
    |||||||||||||||||||||| ||||||||||||| ||   ||| |||||||||||||||||||||||||||||||| ||||||| ||||||||         
T  32558218 ggtggattctagggtgaaccatcaactaagtggttcaccgacggatcacttttgtacaccattcgatttaaattaaaggtttagatatgttagacaaaaa 32558317  T
Q  171 nn-tgagaacacaagtatacttatgcacactatccttgttcatttaaaaaccactgtttccttat-aaaaaagtctccttttacttcacccctccaattc 268  Q
       |||||||| |||||||||| ||||||||||||||||||||||||||||||| |||||||||| |||||| |||||||||||||||||||||||||||    
T  32558318 aaatgagaacataagtatacttctgcacactatccttgttcatttaaaaaccaccgtttccttataaaaaaaatctccttttacttcacccctccaattc 32558417  T
Q  269 aaaatct 275  Q
    |||||||    
T  32558418 aaaatct 32558424  T

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Target: chr3; HSP #3
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 133 - 275
Target Start/End: Original strand, 7050460 - 7050602
Alignment:
Q  133 tcgatttaaattaaagatttagatgtgttagacnnnnnnntgagaacacaagtatacttatgcacactatccttgttcatttaaaaaccactgtttcctt 232  Q
    |||||||||||||||| ||||||||||||||||       ||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||    
T  7050460 tcgatttaaattaaaggtttagatgtgttagacaaaaaaatgagaacacaagtatacttctgcacactatccttattcatttaaaaaccactgtttcctt 7050559  T
Q  233 ataaaaaagtctccttttacttcacccctccaattcaaaatct 275  Q
    || ||||| ||||||||||||||||||||||||||||||||||    
T  7050560 attaaaaaatctccttttacttcacccctccaattcaaaatct 7050602  T

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Target: chr3; HSP #4
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 71 - 209
Target Start/End: Original strand, 53343105 - 53343243
Alignment:
Q  71 ggtggattctagggtgaaccattaactaagtggttccccagtggaccacttttgtacaccattcgatttaaattaaagatttagatgtgttagacnnnnn 170  Q
    ||||||||||||| |||||||| || ||||||||||  | ||||||||| ||| ||||||||  |||||||||||||| |||| ||||||||||          
T  53343105 ggtggattctaggatgaaccatcaaataagtggttcatcggtggaccacctttatacaccatcagatttaaattaaaggtttaaatgtgttagagacaaa 53343204  T
Q  171 nntgagaacacaagtatacttatgcacactatccttgtt 209  Q
      |||||||||||||||| || |||||||||||||||||    
T  53343205 agtgagaacacaagtatatttttgcacactatccttgtt 53343243  T

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Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 70 - 106
Target Start/End: Original strand, 27982330 - 27982366
Alignment:
Q  70 tggtggattctagggtgaaccattaactaagtggttc 106  Q
    ||||||||||||||||||||||  |||||||||||||    
T  27982330 tggtggattctagggtgaaccaccaactaagtggttc 27982366  T

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Target: chr5 (Bit Score: 59; Significance: 5e-25; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 71 - 209
Target Start/End: Original strand, 38558946 - 38559085
Alignment:
Q  71 ggtggattctagggtgaaccattaactaagtggttccccagtggaccacttttgtacaccattcgatttaaattaaagatttagatgtgttagacnnnnn 170  Q
    ||||||||||||| ||||||||||| ||||||||||  | ||||||||| ||| ||||||||  |||||||||||||| |||||||||||||||          
T  38558946 ggtggattctaggatgaaccattaaataagtggttcatcggtggaccacctttatacaccatcagatttaaattaaaggtttagatgtgttagagacaaa 38559045  T
Q  171 nntgagaacac-aagtatacttatgcacactatccttgtt 209  Q
      ||||||||| ||||||| || |||||||||||||||||    
T  38559046 agtgagaacacaaagtatatttttgcacactatccttgtt 38559085  T

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Target: chr8 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 71 - 209
Target Start/End: Complemental strand, 40600705 - 40600567
Alignment:
Q  71 ggtggattctagggtgaaccattaactaagtggttccccagtggaccacttttgtacaccattcgatttaaattaaagatttagatgtgttagacnnnnn 170  Q
    |||||||| |||| |||||||| || ||||||||||  | ||||||||  ||| ||||||||   ||||||||||||| |||||| ||||||||          
T  40600705 ggtggattttaggatgaaccatcaaataagtggttcatcggtggaccatctttatacaccatcaaatttaaattaaaggtttagacgtgttagagacaaa 40600606  T
Q  171 nntgagaacacaagtatacttatgcacactatccttgtt 209  Q
      ||||||||||| |||| || |||||| ||||||||||    
T  40600605 agtgagaacacaaatatatttttgcacaatatccttgtt 40600567  T

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Target: chr7 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 69 - 132
Target Start/End: Complemental strand, 22297946 - 22297883
Alignment:
Q  69 ttggtggattctagggtgaaccattaactaagtggttccccagtggaccacttttgtacaccat 132  Q
    |||||||||||||| ||||||||| || ||||||||||  | ||||||||||||| || |||||    
T  22297946 ttggtggattctagagtgaaccatcaattaagtggttcatcggtggaccacttttatataccat 22297883  T

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Target: chr2 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 78 - 123
Target Start/End: Complemental strand, 10174738 - 10174693
Alignment:
Q  78 tctagggtgaaccattaactaagtggttccccagtggaccactttt 123  Q
    ||||||||||||||| |||||| |||||| || |||||||||||||    
T  10174738 tctagggtgaaccatcaactaaatggttcaccggtggaccactttt 10174693  T

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