View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15984_low_28 (Length: 277)
Name: NF15984_low_28
Description: NF15984
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15984_low_28 |
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Alignment Details
Target: chr7 (Bit Score: 219; Significance: 1e-120; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 11 - 260
Target Start/End: Original strand, 8762703 - 8762950
Alignment:
| Q |
11 |
cacagaactcggaagacttgatgcaaaccttgattctagagctctctgagacatgccttcaaccattcctttctctgcaacatctcgcagaaatatgcga |
110 |
Q |
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| T |
8762703 |
cacagaactcggaagacttgatgcaaaccttgattctagagctctctgagacatgccttcaaccattcctttctcggcaacatctcgcagaaatatgcga |
8762802 |
T |
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| Q |
111 |
tacttctgcaagtattgtgattatatataccaaagcattagagtttgcaagatatactagagaaagttaagataatgacaaaaattagagacagaaaaat |
210 |
Q |
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| T |
8762803 |
tacttctgcaagtattgtgat--catataccaaagcattagagtttgcaagatatactcgagaaagttaagataatgacaaaaattagagacagaaaaat |
8762900 |
T |
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| Q |
211 |
tatcaacattataattcagtctgctaatgatgatattataatattattga |
260 |
Q |
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| T |
8762901 |
tatcaacattatcattcagtctgctaatgatgttattataatattattga |
8762950 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 161; E-Value: 6e-86
Query Start/End: Original strand, 11 - 260
Target Start/End: Original strand, 8789186 - 8789429
Alignment:
| Q |
11 |
cacagaactcggaagacttgatgcaaaccttgattctagagctctctgagacatgccttcaaccattcctttctctgcaacatctcgcagaaatatgcga |
110 |
Q |
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||||||||||| |||| |||||||||| ||||| ||||||||| ||||| | |||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
8789186 |
cacagaactcgatagacctgatgcaaacattgatgttagagctctgtgagata-gcctccaaccattcctttctctgcaacatctcgcagaaatatgcga |
8789284 |
T |
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| Q |
111 |
tacttctgcaagtattgtgattatatataccaaagcattagagtttgcaagatatactagagaaagttaagataatgacaaaaattagagacagaaaaat |
210 |
Q |
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||||||||||||||||||||| ||||| | ||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||| |
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| T |
8789285 |
tacttctgcaagtattgtgatcatata--ctaaagcattagagtttgcaagatatactagagaaagttaagacaacgacaaaaattagagacagaaaaat |
8789382 |
T |
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| Q |
211 |
tatcaacattataattcagtctgctaatgatgatattataatattattga |
260 |
Q |
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| T |
8789383 |
tatcaacattatcattcagtctgcta---atgatattataatattattga |
8789429 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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