View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15984_low_30 (Length: 266)
Name: NF15984_low_30
Description: NF15984
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15984_low_30 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 231; Significance: 1e-127; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 1 - 247
Target Start/End: Original strand, 1554675 - 1554921
Alignment:
| Q |
1 |
atatgccttaccatccatcttggcaattccaaatcgcttttgcagcttggtaagtgtcattctcatgactaaagtgtcccctgcaatcacgagcttacga |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
1554675 |
atatgccttaccatccatcttggcaattccaaatcgcttttgcagcttggtaagtgtcattctcatgactaaagtgtcccctgcaatcacgggcttacga |
1554774 |
T |
|
| Q |
101 |
aatcgcactttgtctattctggcaaagaagaagtttgcacgagaaccacccacatcagaatgcaacattaccaaaccaccaacttgtgccattgcctgca |
200 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1554775 |
aatcgcactttgtctattccggcaaagaagaagtttgcacgagaaccaccgacatcaggatgcaacattaccaaaccaccaacttgtgccattgcctgca |
1554874 |
T |
|
| Q |
201 |
gcaaaagatctcacgttcatgcccgcttttaaagcgcatcataacat |
247 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1554875 |
gcaaaagatctcacgttcatgcccgcttttaaagcgcatcataacat |
1554921 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 62; Significance: 7e-27; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 3 - 200
Target Start/End: Complemental strand, 37575310 - 37575113
Alignment:
| Q |
3 |
atgccttaccatccatcttggcaattccaaatcgcttttgcagcttggtaagtgtcattctcatgactaaagtgtcccctgcaatcacgagcttacgaaa |
102 |
Q |
| |
|
||||||| || |||||||| || |||||||||||||||||||| ||| |||||||||||||||| |||| ||||| || |||||||| |||| | ||| |
|
|
| T |
37575310 |
atgccttcccttccatctttgctattccaaatcgcttttgcagtttgataagtgtcattctcataactagggtgtctccagcaatcactggcttcctaaa |
37575211 |
T |
|
| Q |
103 |
tcgcactttgtctattctggcaaagaagaagtttgcacgagaaccacccacatcagaatgcaacattaccaaaccaccaacttgtgccattgcctgca |
200 |
Q |
| |
|
||| ||||||||||| | ||||||||||| || | |||||||| || || |||| || ||||| ||||| ||||| || ||||||| |||||||| |
|
|
| T |
37575210 |
tcgtactttgtctatcccagcaaagaagaaattctcgcgagaacctcctacttcaggttgtaacataaccaagccacctacctgtgccaatgcctgca |
37575113 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University